Search results for the GEO ID: GSE11683  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM296658 | GPL570 |
|
MDA-MB-468GFP_biorep_1
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MDA-MB-468GFP parental cell line, Bio Rep 1
|
MDA-MB-468GFP parental cell line,
Bio Rep 1
Derivative of MDA-MB-468, a Breast Cancer Adenomcarcinoma cell line
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Data were imported into Genespring 7.0 for further analysis.
|
| Sample_geo_accession | GSM296658
| | Sample_status | Public on May 26 2009
| | Sample_submission_date | Jun 04 2008
| | Sample_last_update_date | May 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Derived in our lab
| | Sample_growth_protocol_ch1 | Cells grown in a-MEM media supplemented with 10% FCS, 5% CO2, 37 deg
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Used RNeasy RNA extraction kit (Qiagen) as per Manufacturer's protocol.
| | Sample_label_ch1 | Biotin + SApi (As per affymetrix standard protocol, www.affymetrix.com)
| | Sample_label_protocol_ch1 | Labeling performed at the London Regional Genenomics Center (www.lrgc.ca) as per Affymetrix's standard one cycle labeling protocol for this chip type (www.affymetrix.com)
| | Sample_hyb_protocol | Hybridization performed at the London Regional Genenomics Center (www.lrgc.ca) as per Affymetrix's standard hybridization protocol for this chip type (www.affymetrix.com)
| | Sample_scan_protocol | Scanning performed at the London Regional Genenomics Center (www.lrgc.ca) as per Affymetrix's standard scanning protocol for this chip type (www.affymetrix.com)
| | Sample_data_processing | Data processed using MAS 5.0 standard algorithm.
| | Sample_data_processing | Alpha1: 0.05
| | Sample_data_processing | Alpha2: 0.065
| | Sample_data_processing | Tau: 0.015
| | Sample_data_processing | Noise (RawQ): 4.300
| | Sample_data_processing | Scale Factor (SF): 0.514
| | Sample_data_processing | TGT Value: 150
| | Sample_data_processing | Norm Factor (NF): 1.000
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann,,Chambers
| | Sample_contact_email | joseph.andrews@lhsc.on.ca
| | Sample_contact_phone | (519) 685-8430
| | Sample_contact_department | Victoria research labs
| | Sample_contact_institute | London Regional Cancer program
| | Sample_contact_address | 790 Commissioner's Road E
| | Sample_contact_city | London
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | N6A 4L6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296658/suppl/GSM296658.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296658/suppl/GSM296658.CHP.gz
| | Sample_series_id | GSE11683
| | Sample_series_id | GSE15619
| | Sample_data_row_count | 54675
| | |
|
GSM296755 | GPL570 |
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MDA-MB-468GFP_biorep_2
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MDA-MB-468GFP parental cell line, Bio rep 2
|
MDA-MB-468GFP parental cell line, Bio rep 2. derivative of MDA-MB-468, a breast cancer adenocarcinoma cell line
|
Data were imported into genespring 7.0 for further analysis
|
| Sample_geo_accession | GSM296755
| | Sample_status | Public on May 26 2009
| | Sample_submission_date | Jun 04 2008
| | Sample_last_update_date | May 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Derived in our lab
| | Sample_growth_protocol_ch1 | Cells grown in a-MEM supplemented with 10% FCS. 5% CO2, 37 deg.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Used RNEasy RNA extraction kit (Qiagen) as per manufacturer's protocol
| | Sample_label_ch1 | Biotin + SAPI
| | Sample_label_protocol_ch1 | Labeling performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's standard one-cycle labeling protocol for this chip type (www,affymetrix.com)
| | Sample_hyb_protocol | Hybridization performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's hybridization protocol for this chip type (www,affymetrix.com)
| | Sample_scan_protocol | Scanning performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's scanning protocol for this chip type (www,affymetrix.com)
| | Sample_data_processing | Data processes using MAS5.0 standard algorithm.
| | Sample_data_processing | Alpha1: 0.05
| | Sample_data_processing | Alpha2: 0.065
| | Sample_data_processing | Tau:0.015
| | Sample_data_processing | Noise (RawQ) 4.300
| | Sample_data_processing | TGT Value: 150
| | Sample_data_processing | Norm Factor (NF): 1.000
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann,,Chambers
| | Sample_contact_email | joseph.andrews@lhsc.on.ca
| | Sample_contact_phone | (519) 685-8430
| | Sample_contact_department | Victoria research labs
| | Sample_contact_institute | London Regional Cancer program
| | Sample_contact_address | 790 Commissioner's Road E
| | Sample_contact_city | London
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | N6A 4L6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296755/suppl/GSM296755.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296755/suppl/GSM296755.CHP.gz
| | Sample_series_id | GSE11683
| | Sample_series_id | GSE15619
| | Sample_data_row_count | 54675
| | |
|
GSM296756 | GPL570 |
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MDA-MB-468GFP_biorep_3
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MDA-MB-468GFP Parental cell line, Bio rep 3
|
bio rep 3. Derivative of MDA-MB-468 Breast adenocarcinoma cell line
|
Data were imported into genespring 7.0 for further analysis
|
| Sample_geo_accession | GSM296756
| | Sample_status | Public on May 26 2009
| | Sample_submission_date | Jun 04 2008
| | Sample_last_update_date | May 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Derived in our lab
| | Sample_growth_protocol_ch1 | Cells grown in a-MEM supplemented with 10% FCS. 5% CO2, 37 deg.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Used RNEasy RNA extraction kit (Qiagen) as per manufacturer's protocol
| | Sample_label_ch1 | Biotin + SAPI
| | Sample_label_protocol_ch1 | Labeling performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's standard one-cycle labeling protocol for this chip type (www,affymetrix.com)
| | Sample_hyb_protocol | Hybridization performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's hybridization protocol for this chip type (www.affymetrix.com)
| | Sample_scan_protocol | Scanning performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's scanning protocol for this chip type (www,affymetrix.com)
| | Sample_data_processing | Data processes using MAS5.0 standard algorithm.
| | Sample_data_processing | Alpha1: 0.05
| | Sample_data_processing | Alpha2: 0.065
| | Sample_data_processing | Tau:0.015
| | Sample_data_processing | Noise (RawQ) 4.300
| | Sample_data_processing | TGT Value: 150
| | Sample_data_processing | Norm Factor (NF): 1.000
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann,,Chambers
| | Sample_contact_email | joseph.andrews@lhsc.on.ca
| | Sample_contact_phone | (519) 685-8430
| | Sample_contact_department | Victoria research labs
| | Sample_contact_institute | London Regional Cancer program
| | Sample_contact_address | 790 Commissioner's Road E
| | Sample_contact_city | London
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | N6A 4L6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296756/suppl/GSM296756.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296756/suppl/GSM296756.CHP.gz
| | Sample_series_id | GSE11683
| | Sample_series_id | GSE15619
| | Sample_data_row_count | 54675
| | |
|
GSM296757 | GPL570 |
|
MDA-MB-468GFP-LN_BIOREP_1
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MDA-MB-468GFP-LN_BIOREP_1
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MDA-MB-468GFP-LN_BIOREP_1. isolated from a lymph node metatasis of MDA-MB-468GFP.
|
Data were imported into genespring 7.0 for further analysis
|
| Sample_geo_accession | GSM296757
| | Sample_status | Public on May 26 2009
| | Sample_submission_date | Jun 04 2008
| | Sample_last_update_date | May 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Derived in our lab
| | Sample_growth_protocol_ch1 | Cells grown in a-MEM supplemented with 10% FCS. 5% CO2, 37 deg.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Used RNEasy RNA extraction kit (Qiagen) as per manufacturer's protocol
| | Sample_label_ch1 | Biotin + SAPI
| | Sample_label_protocol_ch1 | Labeling performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's standard one-cycle labeling protocol for this chip type (www,affymetrix.com)
| | Sample_hyb_protocol | Hybridization performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's hybridization protocol for this chip type (www.affymetrix.com)
| | Sample_scan_protocol | Scanning performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's scanning protocol for this chip type (www,affymetrix.com)
| | Sample_data_processing | Data processes using MAS5.0 standard algorithm.
| | Sample_data_processing | Alpha1: 0.05
| | Sample_data_processing | Alpha2: 0.065
| | Sample_data_processing | Tau:0.015
| | Sample_data_processing | Noise (RawQ) 4.300
| | Sample_data_processing | TGT Value: 150
| | Sample_data_processing | Norm Factor (NF): 1.000
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann,,Chambers
| | Sample_contact_email | joseph.andrews@lhsc.on.ca
| | Sample_contact_phone | (519) 685-8430
| | Sample_contact_department | Victoria research labs
| | Sample_contact_institute | London Regional Cancer program
| | Sample_contact_address | 790 Commissioner's Road E
| | Sample_contact_city | London
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | N6A 4L6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296757/suppl/GSM296757.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296757/suppl/GSM296757.CHP.gz
| | Sample_series_id | GSE11683
| | Sample_series_id | GSE15619
| | Sample_data_row_count | 54675
| | |
|
GSM296758 | GPL570 |
|
MDA-MB-468GFP-LN_BIOREP_2
|
MDA-MB-468GFP-LN_BIOREP-2
|
Isolated from a lymphatic metastasis of it's parental cell line MDA-MB-468GFP.
|
Data were imported into genespring 7.0 for further analysis
|
| Sample_geo_accession | GSM296758
| | Sample_status | Public on May 26 2009
| | Sample_submission_date | Jun 04 2008
| | Sample_last_update_date | May 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Derived in our lab
| | Sample_growth_protocol_ch1 | Cells grown in a-MEM supplemented with 10% FCS. 5% CO2, 37 deg.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Used RNEasy RNA extraction kit (Qiagen) as per manufacturer's protocol
| | Sample_label_ch1 | Biotin + SAPI
| | Sample_label_protocol_ch1 | Labeling performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's standard one-cycle labeling protocol for this chip type (www,affymetrix.com)
| | Sample_hyb_protocol | Hybridization performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's hybridization protocol for this chip type (www.affymetrix.com)
| | Sample_scan_protocol | Scanning performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's scanning protocol for this chip type (www.affymetrix.com)
| | Sample_data_processing | Data processes using MAS5.0 standard algorithm.
| | Sample_data_processing | Alpha1: 0.05
| | Sample_data_processing | Alpha2: 0.065
| | Sample_data_processing | Tau:0.015
| | Sample_data_processing | Noise (RawQ) 4.300
| | Sample_data_processing | TGT Value: 150
| | Sample_data_processing | Norm Factor (NF): 1.000
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann,,Chambers
| | Sample_contact_email | joseph.andrews@lhsc.on.ca
| | Sample_contact_phone | (519) 685-8430
| | Sample_contact_department | Victoria research labs
| | Sample_contact_institute | London Regional Cancer program
| | Sample_contact_address | 790 Commissioner's Road E
| | Sample_contact_city | London
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | N6A 4L6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296758/suppl/GSM296758.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296758/suppl/GSM296758.CHP.gz
| | Sample_series_id | GSE11683
| | Sample_series_id | GSE15619
| | Sample_data_row_count | 54675
| | |
|
GSM296759 | GPL570 |
|
MDA-MB-468GFP-LN_BIOREP_3
|
MDA-MB-468GFP-LN_BIOREP_3
|
Derived from a lymph node metastasis of it parental line, MDA-MB-468GFP.
|
Data were imported into genespring 7.0 for further analysis
|
| Sample_geo_accession | GSM296759
| | Sample_status | Public on May 26 2009
| | Sample_submission_date | Jun 04 2008
| | Sample_last_update_date | May 26 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Derived in our lab
| | Sample_growth_protocol_ch1 | Cells grown in a-MEM supplemented with 10% FCS. 5% CO2, 37 deg.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Used RNEasy RNA extraction kit (Qiagen) as per manufacturer's protocol
| | Sample_label_ch1 | Biotin + SAPI
| | Sample_label_protocol_ch1 | Labeling performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's standard one-cycle labeling protocol for this chip type (www,affymetrix.com)
| | Sample_hyb_protocol | Hybridization performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's hybridization protocol for this chip type (www.affymetrix.com)
| | Sample_scan_protocol | Scanning performed at the London regional cancer program (www.lrgc.ca) as per Affymetrix's scanning protocol for this chip type (www.affymetrix.com)
| | Sample_data_processing | Data processes using MAS5.0 standard algorithm.
| | Sample_data_processing | Alpha1: 0.05
| | Sample_data_processing | Alpha2: 0.065
| | Sample_data_processing | Tau:0.015
| | Sample_data_processing | Noise (RawQ) 4.300
| | Sample_data_processing | TGT Value: 150
| | Sample_data_processing | Norm Factor (NF): 1.000
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann,,Chambers
| | Sample_contact_email | joseph.andrews@lhsc.on.ca
| | Sample_contact_phone | (519) 685-8430
| | Sample_contact_department | Victoria research labs
| | Sample_contact_institute | London Regional Cancer program
| | Sample_contact_address | 790 Commissioner's Road E
| | Sample_contact_city | London
| | Sample_contact_state | Ontario
| | Sample_contact_zip/postal_code | N6A 4L6
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296759/suppl/GSM296759.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM296nnn/GSM296759/suppl/GSM296759.CHP.gz
| | Sample_series_id | GSE11683
| | Sample_series_id | GSE15619
| | Sample_data_row_count | 54675
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