Search results for the GEO ID: GSE11777 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM298115 | GPL1261 |
|
WT biol. Repeat1
|
wild type
|
wild type
|
Gene expression data from E14.5 fetal liver Ter119 + cells
|
Sample_geo_accession | GSM298115
| Sample_status | Public on Jun 13 2008
| Sample_submission_date | Jun 12 2008
| Sample_last_update_date | Jun 12 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Isolate Ter119+ fetal liver cells from wild type and STAT5 KO embryos
| Sample_growth_protocol_ch1 | In vivo fetal liver cells at embryonic day 14.5
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA one cycle target labeling assay with streptavidin phycoerythrin (SAPE) labeling
| Sample_hyb_protocol | Genechip hybridization oven 640. Incubate 16hrs with 60 cycles/minute rotation at 45 degrees celsius
| Sample_scan_protocol | Affymetrix 7G autoloader genechip scanner
| Sample_data_processing | Microarray analyses were performed using Affymetrix Mouse Genome 430 2.0 array GeneChips (Affymetrix). Microarray signals were analyzed using the Affymetrix RMA algorithm. Up- and down-regulated genes were selected based on P values of <0.05 and fold changes of >1.5 or -1.5 as assessed by ANOVA using Partek Pro software (Partek). To determine specific pathways, gene pathway analysis (http://trials.genego.com/cgi/index.cgi) was obtained using the statistically significant gene list (P<0.05) represented on the chip.
| Sample_platform_id | GPL1261
| Sample_contact_name | Bing Mei,,Zhu
| Sample_contact_email | bingmeiz@mail.nih.gov
| Sample_contact_phone | 3014356634
| Sample_contact_laboratory | LGP
| Sample_contact_department | NIDDK
| Sample_contact_institute | NIH
| Sample_contact_address | 9000 Rockville Pike
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298115/suppl/GSM298115.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298115/suppl/GSM298115.CHP.gz
| Sample_series_id | GSE11777
| Sample_data_row_count | 45101
| |
|
GSM298116 | GPL1261 |
|
WT biol. Repeat2
|
wild type
|
wild type
|
Gene expression data from E14.5 fetal liver Ter119 + cells
|
Sample_geo_accession | GSM298116
| Sample_status | Public on Jun 13 2008
| Sample_submission_date | Jun 12 2008
| Sample_last_update_date | Jun 12 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Isolate Ter119+ fetal liver cells from wild type and STAT5 KO embryos
| Sample_growth_protocol_ch1 | In vivo fetal liver cells at embryonic day 14.5
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA one cycle target labeling assay with streptavidin phycoerythrin (SAPE) labeling
| Sample_hyb_protocol | Genechip hybridization oven 640. Incubate 16hrs with 60 cycles/minute rotation at 45 degrees celsius
| Sample_scan_protocol | Affymetrix 7G autoloader genechip scanner
| Sample_data_processing | Microarray analyses were performed using Affymetrix Mouse Genome 430 2.0 array GeneChips (Affymetrix). Microarray signals were analyzed using the Affymetrix RMA algorithm. Up- and down-regulated genes were selected based on P values of <0.05 and fold changes of >1.5 or -1.5 as assessed by ANOVA using Partek Pro software (Partek). To determine specific pathways, gene pathway analysis (http://trials.genego.com/cgi/index.cgi) was obtained using the statistically significant gene list (P<0.05) represented on the chip.
| Sample_platform_id | GPL1261
| Sample_contact_name | Bing Mei,,Zhu
| Sample_contact_email | bingmeiz@mail.nih.gov
| Sample_contact_phone | 3014356634
| Sample_contact_laboratory | LGP
| Sample_contact_department | NIDDK
| Sample_contact_institute | NIH
| Sample_contact_address | 9000 Rockville Pike
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298116/suppl/GSM298116.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298116/suppl/GSM298116.CHP.gz
| Sample_series_id | GSE11777
| Sample_data_row_count | 45101
| |
|
GSM298117 | GPL1261 |
|
WT biol. Repeat3
|
wild type
|
wild type
|
Gene expression data from E14.5 fetal liver Ter119 + cells
|
Sample_geo_accession | GSM298117
| Sample_status | Public on Jun 13 2008
| Sample_submission_date | Jun 12 2008
| Sample_last_update_date | Jun 12 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Isolate Ter119+ fetal liver cells from wild type and STAT5 KO embryos
| Sample_growth_protocol_ch1 | In vivo fetal liver cells at embryonic day 14.5
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA one cycle target labeling assay with streptavidin phycoerythrin (SAPE) labeling
| Sample_hyb_protocol | Genechip hybridization oven 640. Incubate 16hrs with 60 cycles/minute rotation at 45 degrees celsius
| Sample_scan_protocol | Affymetrix 7G autoloader genechip scanner
| Sample_data_processing | Microarray analyses were performed using Affymetrix Mouse Genome 430 2.0 array GeneChips (Affymetrix). Microarray signals were analyzed using the Affymetrix RMA algorithm. Up- and down-regulated genes were selected based on P values of <0.05 and fold changes of >1.5 or -1.5 as assessed by ANOVA using Partek Pro software (Partek). To determine specific pathways, gene pathway analysis (http://trials.genego.com/cgi/index.cgi) was obtained using the statistically significant gene list (P<0.05) represented on the chip.
| Sample_platform_id | GPL1261
| Sample_contact_name | Bing Mei,,Zhu
| Sample_contact_email | bingmeiz@mail.nih.gov
| Sample_contact_phone | 3014356634
| Sample_contact_laboratory | LGP
| Sample_contact_department | NIDDK
| Sample_contact_institute | NIH
| Sample_contact_address | 9000 Rockville Pike
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298117/suppl/GSM298117.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298117/suppl/GSM298117.CHP.gz
| Sample_series_id | GSE11777
| Sample_data_row_count | 45101
| |
|
GSM298118 | GPL1261 |
|
KO biol. Repeat1
|
STAT5 KO
|
STAT5 KO
|
Gene expression data from E14.5 fetal liver Ter119 + cells
|
Sample_geo_accession | GSM298118
| Sample_status | Public on Jun 13 2008
| Sample_submission_date | Jun 12 2008
| Sample_last_update_date | Jun 12 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Isolate Ter119+ fetal liver cells from wild type and STAT5 KO embryos
| Sample_growth_protocol_ch1 | In vivo fetal liver cells at embryonic day 14.5
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA one cycle target labeling assay with streptavidin phycoerythrin (SAPE) labeling
| Sample_hyb_protocol | Genechip hybridization oven 640. Incubate 16hrs with 60 cycles/minute rotation at 45 degrees celsius
| Sample_scan_protocol | Affymetrix 7G autoloader genechip scanner
| Sample_data_processing | Microarray analyses were performed using Affymetrix Mouse Genome 430 2.0 array GeneChips (Affymetrix). Microarray signals were analyzed using the Affymetrix RMA algorithm. Up- and down-regulated genes were selected based on P values of <0.05 and fold changes of >1.5 or -1.5 as assessed by ANOVA using Partek Pro software (Partek). To determine specific pathways, gene pathway analysis (http://trials.genego.com/cgi/index.cgi) was obtained using the statistically significant gene list (P<0.05) represented on the chip.
| Sample_platform_id | GPL1261
| Sample_contact_name | Bing Mei,,Zhu
| Sample_contact_email | bingmeiz@mail.nih.gov
| Sample_contact_phone | 3014356634
| Sample_contact_laboratory | LGP
| Sample_contact_department | NIDDK
| Sample_contact_institute | NIH
| Sample_contact_address | 9000 Rockville Pike
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298118/suppl/GSM298118.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298118/suppl/GSM298118.CHP.gz
| Sample_series_id | GSE11777
| Sample_data_row_count | 45101
| |
|
GSM298119 | GPL1261 |
|
KO biol. Repeat2
|
STAT5 KO
|
STAT5 KO
|
Gene expression data from E14.5 fetal liver Ter119 + cells
|
Sample_geo_accession | GSM298119
| Sample_status | Public on Jun 13 2008
| Sample_submission_date | Jun 12 2008
| Sample_last_update_date | Jun 12 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Isolate Ter119+ fetal liver cells from wild type and STAT5 KO embryos
| Sample_growth_protocol_ch1 | In vivo fetal liver cells at embryonic day 14.5
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA one cycle target labeling assay with streptavidin phycoerythrin (SAPE) labeling
| Sample_hyb_protocol | Genechip hybridization oven 640. Incubate 16hrs with 60 cycles/minute rotation at 45 degrees celsius
| Sample_scan_protocol | Affymetrix 7G autoloader genechip scanner
| Sample_data_processing | Microarray analyses were performed using Affymetrix Mouse Genome 430 2.0 array GeneChips (Affymetrix). Microarray signals were analyzed using the Affymetrix RMA algorithm. Up- and down-regulated genes were selected based on P values of <0.05 and fold changes of >1.5 or -1.5 as assessed by ANOVA using Partek Pro software (Partek). To determine specific pathways, gene pathway analysis (http://trials.genego.com/cgi/index.cgi) was obtained using the statistically significant gene list (P<0.05) represented on the chip.
| Sample_platform_id | GPL1261
| Sample_contact_name | Bing Mei,,Zhu
| Sample_contact_email | bingmeiz@mail.nih.gov
| Sample_contact_phone | 3014356634
| Sample_contact_laboratory | LGP
| Sample_contact_department | NIDDK
| Sample_contact_institute | NIH
| Sample_contact_address | 9000 Rockville Pike
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298119/suppl/GSM298119.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298119/suppl/GSM298119.CHP.gz
| Sample_series_id | GSE11777
| Sample_data_row_count | 45101
| |
|
GSM298120 | GPL1261 |
|
KO biol. Repeat3
|
STAT5 KO
|
STAT5 KO
|
Gene expression data from E14.5 fetal liver Ter119 + cells
|
Sample_geo_accession | GSM298120
| Sample_status | Public on Jun 13 2008
| Sample_submission_date | Jun 12 2008
| Sample_last_update_date | Jun 12 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Isolate Ter119+ fetal liver cells from wild type and STAT5 KO embryos
| Sample_growth_protocol_ch1 | In vivo fetal liver cells at embryonic day 14.5
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Total RNA one cycle target labeling assay with streptavidin phycoerythrin (SAPE) labeling
| Sample_hyb_protocol | Genechip hybridization oven 640. Incubate 16hrs with 60 cycles/minute rotation at 45 degrees celsius
| Sample_scan_protocol | Affymetrix 7G autoloader genechip scanner
| Sample_data_processing | Microarray analyses were performed using Affymetrix Mouse Genome 430 2.0 array GeneChips (Affymetrix). Microarray signals were analyzed using the Affymetrix RMA algorithm. Up- and down-regulated genes were selected based on P values of <0.05 and fold changes of >1.5 or -1.5 as assessed by ANOVA using Partek Pro software (Partek). To determine specific pathways, gene pathway analysis (http://trials.genego.com/cgi/index.cgi) was obtained using the statistically significant gene list (P<0.05) represented on the chip.
| Sample_platform_id | GPL1261
| Sample_contact_name | Bing Mei,,Zhu
| Sample_contact_email | bingmeiz@mail.nih.gov
| Sample_contact_phone | 3014356634
| Sample_contact_laboratory | LGP
| Sample_contact_department | NIDDK
| Sample_contact_institute | NIH
| Sample_contact_address | 9000 Rockville Pike
| Sample_contact_city | Bethesda
| Sample_contact_state | MD
| Sample_contact_zip/postal_code | 20892
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298120/suppl/GSM298120.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298120/suppl/GSM298120.CHP.gz
| Sample_series_id | GSE11777
| Sample_data_row_count | 45101
| |
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