Search results for the GEO ID: GSE11783 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM298203 | GPL570 |
|
patient:10--location:healthy--R:01
|
cold cup biopsy, 20mm3 size, healthy
|
tissue: bladder
disease state: no
|
no additional information
|
Sample_geo_accession | GSM298203
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298203/suppl/GSM298203.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298203/suppl/GSM298203.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298204 | GPL570 |
|
patient:11--location:healthy--R:01
|
cold cup biopsy, 20mm3 size, healthy
|
tissue: bladder
disease state: no
|
no additional information
|
Sample_geo_accession | GSM298204
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298204/suppl/GSM298204.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298204/suppl/GSM298204.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298205 | GPL570 |
|
patient:12--location:ni--R:01
|
cold cup biopsy, 20mm3 size, IC non-ulcer tissue
|
tissue: bladder
disease state: IC, non-ulcer tissue
|
no additional information
|
Sample_geo_accession | GSM298205
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298205/suppl/GSM298205.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298205/suppl/GSM298205.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298206 | GPL570 |
|
patient:12--location:ulcus--R:01
|
cold cup biopsy, 20mm3 size, IC ulcer
|
tissue: bladder
disease state: IC, ulcer
|
no additional information
|
Sample_geo_accession | GSM298206
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298206/suppl/GSM298206.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298206/suppl/GSM298206.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298207 | GPL570 |
|
patient:13--location:ni--R:01
|
cold cup biopsy, 20mm3 size, IC non-ulcer tissue
|
tissue: bladder
disease state: IC, non-ulcer tissue
|
no additional information
|
Sample_geo_accession | GSM298207
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298207/suppl/GSM298207.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298207/suppl/GSM298207.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298208 | GPL570 |
|
patient:13--location:ulcus--R:01
|
cold cup biopsy, 20mm3 size, IC ulcer
|
tissue: bladder
disease state: IC, ulcer
|
no additional information
|
Sample_geo_accession | GSM298208
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298208/suppl/GSM298208.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298208/suppl/GSM298208.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298209 | GPL570 |
|
patient:14--location:ulcus--R:01
|
cold cup biopsy, 20mm3 size, IC ulcer
|
tissue: bladder
disease state: IC, ulcer
|
no additional information
|
Sample_geo_accession | GSM298209
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298209/suppl/GSM298209.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298209/suppl/GSM298209.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298210 | GPL570 |
|
patient:15--location:ni--R:01
|
cold cup biopsy, 20mm3 size, IC non-ulcer tissue
|
tissue: bladder
disease state: IC, non-ulcer tissue
|
no additional information
|
Sample_geo_accession | GSM298210
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298210/suppl/GSM298210.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298210/suppl/GSM298210.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298211 | GPL570 |
|
patient:15--location:ulcus--R:01
|
cold cup biopsy, 20mm3 size, IC ulcer
|
tissue: bladder
disease state: IC, ulcer
|
no additional information
|
Sample_geo_accession | GSM298211
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298211/suppl/GSM298211.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298211/suppl/GSM298211.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298212 | GPL570 |
|
patient:2--location:healthy--R:01
|
cold cup biopsy, 20mm3 size, healthy
|
tissue: bladder
disease state: no
|
no additional information
|
Sample_geo_accession | GSM298212
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298212/suppl/GSM298212.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298212/suppl/GSM298212.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298213 | GPL570 |
|
patient:4--location:ni--R:01
|
cold cup biopsy, 20mm3 size, IC non-ulcer tissue
|
tissue: bladder
disease state: IC, non-ulcer tissue
|
no additional information
|
Sample_geo_accession | GSM298213
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298213/suppl/GSM298213.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298213/suppl/GSM298213.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298214 | GPL570 |
|
patient:4--location:ulcus--R:01
|
cold cup biopsy, 20mm3 size, IC ulcer
|
tissue: bladder
disease state: IC, ulcer
|
no additional information
|
Sample_geo_accession | GSM298214
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298214/suppl/GSM298214.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298214/suppl/GSM298214.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298215 | GPL570 |
|
patient:5--location:healthy--R:01
|
cold cup biopsy, 20mm3 size, healthy
|
tissue: bladder
disease state: no
|
no additional information
|
Sample_geo_accession | GSM298215
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298215/suppl/GSM298215.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298215/suppl/GSM298215.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298216 | GPL570 |
|
patient:7--location:healthy--R:01
|
cold cup biopsy, 20mm3 size, healthy
|
tissue: bladder
disease state: no
|
no additional information
|
Sample_geo_accession | GSM298216
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298216/suppl/GSM298216.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298216/suppl/GSM298216.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM298217 | GPL570 |
|
patient:9--location:healthy--R:01
|
cold cup biopsy, 20mm3 size, healthy
|
tissue: bladder
disease state: no
|
no additional information
|
Sample_geo_accession | GSM298217
| Sample_status | Public on May 01 2009
| Sample_submission_date | Jun 13 2008
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298217/suppl/GSM298217.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM298nnn/GSM298217/suppl/GSM298217.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
GSM402541 | GPL570 |
|
patient:14--location:ni--R:01
|
cold cup biopsy, 20mm3 size, IC non-ulcer tissue
|
tissue: bladder
disease state: IC, non-ulcer tissue
|
no additional information
|
Sample_geo_accession | GSM402541
| Sample_status | Public on May 13 2009
| Sample_submission_date | May 13 2009
| Sample_last_update_date | May 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Bladder biopsies have been stored in RNAlater (QIAGEN), according to the manufacturer's instructions.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total-RNA has been isolated with the RNeasy Mini Kit (QIAGEN) including an on column DNaseI digestion, according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to standard Affymetrix protocol from 1 ug total-RNA.
| Sample_hyb_protocol | Following fragmentation, 13 ug of biotin-labeled cRNA were hybridized for 16 h at 45 C on GeneChip Human Genome U133 Plus 2.0 arrays. Arrays were then washed using an Affymetrix Fluidics Station 450 FS450_001 protocol.
| Sample_scan_protocol | Standard Affymetrix procedures
| Sample_data_processing | Signal intensities were detected and analyzed with the Affymetrix gene chip operating software version 1.4 (GCOS; Affymetrix)
| Sample_platform_id | GPL570
| Sample_contact_name | Hubert,,Rehrauer
| Sample_contact_email | Hubert.Rehrauer@fgcz.ethz.ch
| Sample_contact_institute | FGCZ
| Sample_contact_address | Winterthurerstr. 190
| Sample_contact_city | Zurich
| Sample_contact_zip/postal_code | 8057
| Sample_contact_country | Switzerland
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402541/suppl/GSM402541.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM402nnn/GSM402541/suppl/GSM402541.CHP.gz
| Sample_series_id | GSE11783
| Sample_data_row_count | 54675
| |
|
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