Search results for the GEO ID: GSE11899  |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM300676 | GPL1261 |
|
Control_liver_1
|
Liver
|
Strain: mixed
Tissue: liver
Age: 28 days
|
Hepatic gene expression data
|
| Sample_geo_accession | GSM300676
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Jun 26 2008
| | Sample_last_update_date | Jun 26 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Standard housing, feeding, and water. Fasted for 5 hours prior to euthanasia.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM300nnn/GSM300676/suppl/GSM300676.CEL.gz
| | Sample_series_id | GSE11899
| | Sample_data_row_count | 25995
| | |
|
GSM300677 | GPL1261 |
|
Control_liver_2
|
Liver
|
Strain: mixed
Tissue: liver
Age: 28 days
|
Hepatic gene expression data
|
| Sample_geo_accession | GSM300677
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Jun 26 2008
| | Sample_last_update_date | Jun 26 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Standard housing, feeding, and water. Fasted for 5 hours prior to euthanasia.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM300nnn/GSM300677/suppl/GSM300677.CEL.gz
| | Sample_series_id | GSE11899
| | Sample_data_row_count | 25995
| | |
|
GSM300678 | GPL1261 |
|
Control_liver_3
|
Liver
|
Strain: mixed
Tissue: liver
Age: 28 days
|
Hepatic gene expression data
|
| Sample_geo_accession | GSM300678
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Jun 26 2008
| | Sample_last_update_date | Jun 26 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Standard housing, feeding, and water. Fasted for 5 hours prior to euthanasia.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM300nnn/GSM300678/suppl/GSM300678.CEL.gz
| | Sample_series_id | GSE11899
| | Sample_data_row_count | 25995
| | |
|
GSM300679 | GPL1261 |
|
Control_liver_4
|
Liver
|
Strain: mixed
Tissue: liver
Age: 28 days
|
Hepatic gene expression data
|
| Sample_geo_accession | GSM300679
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Jun 26 2008
| | Sample_last_update_date | Jun 26 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Standard housing, feeding, and water. Fasted for 5 hours prior to euthanasia.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM300nnn/GSM300679/suppl/GSM300679.CEL.gz
| | Sample_series_id | GSE11899
| | Sample_data_row_count | 25995
| | |
|
GSM300680 | GPL1261 |
|
Control_liver_5
|
Liver
|
Strain: mixed
Tissue: liver
Age: 28 days
|
Hepatic gene expression data
|
| Sample_geo_accession | GSM300680
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Jun 26 2008
| | Sample_last_update_date | Jun 26 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Standard housing, feeding, and water. Fasted for 5 hours prior to euthanasia.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM300nnn/GSM300680/suppl/GSM300680.CEL.gz
| | Sample_series_id | GSE11899
| | Sample_data_row_count | 25995
| | |
|
GSM300681 | GPL1261 |
|
Mutant_liver_1
|
Liver
|
Strain: mixed
Tissue: liver
Age: 28 days
|
Hepatic gene expression data
|
| Sample_geo_accession | GSM300681
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Jun 26 2008
| | Sample_last_update_date | Jun 26 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Standard housing, feeding, and water. Fasted for 5 hours prior to euthanasia.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM300nnn/GSM300681/suppl/GSM300681.CEL.gz
| | Sample_series_id | GSE11899
| | Sample_data_row_count | 25995
| | |
|
GSM300682 | GPL1261 |
|
Mutant_liver_2
|
Liver
|
Strain: mixed
Tissue: liver
Age: 28 days
|
Hepatic gene expression data
|
| Sample_geo_accession | GSM300682
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Jun 26 2008
| | Sample_last_update_date | Jun 26 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Standard housing, feeding, and water. Fasted for 5 hours prior to euthanasia.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM300nnn/GSM300682/suppl/GSM300682.CEL.gz
| | Sample_series_id | GSE11899
| | Sample_data_row_count | 25995
| | |
|
GSM300683 | GPL1261 |
|
Mutant_liver_3
|
Liver
|
Strain: mixed
Tissue: liver
Age: 28 days
|
Hepatic gene expression data
|
| Sample_geo_accession | GSM300683
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Jun 26 2008
| | Sample_last_update_date | Jun 26 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Standard housing, feeding, and water. Fasted for 5 hours prior to euthanasia.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM300nnn/GSM300683/suppl/GSM300683.CEL.gz
| | Sample_series_id | GSE11899
| | Sample_data_row_count | 25995
| | |
|
GSM300684 | GPL1261 |
|
Mutant_liver_4
|
Liver
|
Strain: mixed
Tissue: liver
Age: 28 days
|
Hepatic gene expression data
|
| Sample_geo_accession | GSM300684
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Jun 26 2008
| | Sample_last_update_date | Jun 26 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Standard housing, feeding, and water. Fasted for 5 hours prior to euthanasia.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM300nnn/GSM300684/suppl/GSM300684.CEL.gz
| | Sample_series_id | GSE11899
| | Sample_data_row_count | 25995
| | |
|
GSM300685 | GPL1261 |
|
Mutant_liver_5
|
Liver
|
Strain: mixed
Tissue: liver
Age: 28 days
|
Hepatic gene expression data
|
| Sample_geo_accession | GSM300685
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Jun 26 2008
| | Sample_last_update_date | Jun 26 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Standard housing, feeding, and water. Fasted for 5 hours prior to euthanasia.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM300nnn/GSM300685/suppl/GSM300685.CEL.gz
| | Sample_series_id | GSE11899
| | Sample_data_row_count | 25995
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