Search results for the GEO ID: GSE11959  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM302678 | GPL570 |
|
vehicle, biological replicate 1
|
human SK-N-AS neuroblastoma xenografts, vehicle
|
Human neuroblastoma cell line SK-N-AS was implanated into nude mice and treated with vehicle control GP120
|
Gene expression data from vehicle treated SK-N-AS, replicate 1
|
| Sample_geo_accession | GSM302678
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Jul 01 2008
| | Sample_last_update_date | Jul 01 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Each mouse was dosed with either vehicle (PBS) or 10H5 (5 mg/kg) i.p.
| | Sample_growth_protocol_ch1 | SK-N-AS cells were grown in RPMI, with 10%FBS and 2mM L-Glutamine. 10 million SK-N-AS cells were inoculated into each nude mouse on the right flank subcutaneusly.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumors were collected at indicated time points flash frozen. RNA extraction procedure were perfomed follow manufacturer's recommendation (QIAGEN, Rneasy mini kit cat#74104)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 19 hr at 45C with 60 rpm rotation on Human genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymterix GeneChip scanner 3000.
| | Sample_data_processing | Data analysis was performed using the Affymetrix GeneChip operating system and analysis software. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jerry,,Tang
| | Sample_contact_email | jtang@gene.com
| | Sample_contact_institute | Genentech Inc
| | Sample_contact_address | 1 DNA Way MS 93
| | Sample_contact_city | south San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM302nnn/GSM302678/suppl/GSM302678.CEL.gz
| | Sample_series_id | GSE11959
| | Sample_data_row_count | 54675
| | |
|
GSM302679 | GPL570 |
|
vehicle, biological replicate 2
|
human SK-N-AS neuroblastoma xenografts, vehicle
|
Human neuroblastoma cell line SK-N-AS was implanated into nude mice and treated with vehicle control GP120
|
Gene expression data from vehicle treated SK-N-AS, replicate 2
|
| Sample_geo_accession | GSM302679
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Jul 01 2008
| | Sample_last_update_date | Jul 01 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Each mouse was dosed with either vehicle (PBS) or 10H5 (5 mg/kg) i.p.
| | Sample_growth_protocol_ch1 | SK-N-AS cells were grown in RPMI, with 10%FBS and 2mM L-Glutamine. 10 million SK-N-AS cells were inoculated into each nude mouse on the right flank subcutaneusly.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumors were collected at indicated time points flash frozen. RNA extraction procedure were perfomed follow manufacturer's recommendation (QIAGEN, Rneasy mini kit cat#74104)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 19 hr at 45C with 60 rpm rotation on Human genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymterix GeneChip scanner 3000.
| | Sample_data_processing | Data analysis was performed using the Affymetrix GeneChip operating system and analysis software. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jerry,,Tang
| | Sample_contact_email | jtang@gene.com
| | Sample_contact_institute | Genentech Inc
| | Sample_contact_address | 1 DNA Way MS 93
| | Sample_contact_city | south San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM302nnn/GSM302679/suppl/GSM302679.CEL.gz
| | Sample_series_id | GSE11959
| | Sample_data_row_count | 54675
| | |
|
GSM302680 | GPL570 |
|
vehicle, biological replicate 3
|
human SK-N-AS neuroblastoma xenografts, vehicle
|
Human neuroblastoma cell line SK-N-AS was implanated into nude mice and treated with vehicle control GP120
|
Gene expression data from vehicle treated SK-N-AS, replicate 3
|
| Sample_geo_accession | GSM302680
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Jul 01 2008
| | Sample_last_update_date | Jul 01 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Each mouse was dosed with either vehicle (PBS) or 10H5 (5 mg/kg) i.p.
| | Sample_growth_protocol_ch1 | SK-N-AS cells were grown in RPMI, with 10%FBS and 2mM L-Glutamine. 10 million SK-N-AS cells were inoculated into each nude mouse on the right flank subcutaneusly.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumors were collected at indicated time points flash frozen. RNA extraction procedure were perfomed follow manufacturer's recommendation (QIAGEN, Rneasy mini kit cat#74104)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 19 hr at 45C with 60 rpm rotation on Human genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymterix GeneChip scanner 3000.
| | Sample_data_processing | Data analysis was performed using the Affymetrix GeneChip operating system and analysis software. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jerry,,Tang
| | Sample_contact_email | jtang@gene.com
| | Sample_contact_institute | Genentech Inc
| | Sample_contact_address | 1 DNA Way MS 93
| | Sample_contact_city | south San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM302nnn/GSM302680/suppl/GSM302680.CEL.gz
| | Sample_series_id | GSE11959
| | Sample_data_row_count | 54675
| | |
|
GSM302681 | GPL570 |
|
vehicle, biological replicate 4
|
human SK-N-AS neuroblastoma xenografts, vehicle
|
Human neuroblastoma cell line SK-N-AS was implanated into nude mice and treated with vehicle control GP120
|
Gene expression data from vehicle treated SK-N-AS, replicate 4
|
| Sample_geo_accession | GSM302681
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Jul 01 2008
| | Sample_last_update_date | Jul 01 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Each mouse was dosed with either vehicle (PBS) or 10H5 (5 mg/kg) i.p.
| | Sample_growth_protocol_ch1 | SK-N-AS cells were grown in RPMI, with 10%FBS and 2mM L-Glutamine. 10 million SK-N-AS cells were inoculated into each nude mouse on the right flank subcutaneusly.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumors were collected at indicated time points flash frozen. RNA extraction procedure were perfomed follow manufacturer's recommendation (QIAGEN, Rneasy mini kit cat#74104)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 19 hr at 45C with 60 rpm rotation on Human genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymterix GeneChip scanner 3000.
| | Sample_data_processing | Data analysis was performed using the Affymetrix GeneChip operating system and analysis software. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jerry,,Tang
| | Sample_contact_email | jtang@gene.com
| | Sample_contact_institute | Genentech Inc
| | Sample_contact_address | 1 DNA Way MS 93
| | Sample_contact_city | south San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM302nnn/GSM302681/suppl/GSM302681.CEL.gz
| | Sample_series_id | GSE11959
| | Sample_data_row_count | 54675
| | |
|
GSM302682 | GPL570 |
|
24 hr 10H5, replicate 1
|
human SK-N-AS neuroblastoma xenografts, treated with 10H5 for 24 hr
|
Human neuroblastoma cell line SK-N-AS was implanated into nude mice and treated with anti-IGF1R antibody 10H5 for 24 hours
|
Gene expression data from SK-N-AS treated with 10H5 for 24 hours, replicate 1
|
| Sample_geo_accession | GSM302682
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Jul 01 2008
| | Sample_last_update_date | Jul 01 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Each mouse was dosed with either vehicle (PBS) or 10H5 (5 mg/kg) i.p.
| | Sample_growth_protocol_ch1 | SK-N-AS cells were grown in RPMI, with 10%FBS and 2mM L-Glutamine. 10 million SK-N-AS cells were inoculated into each nude mouse on the right flank subcutaneusly.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumors were collected at indicated time points flash frozen. RNA extraction procedure were perfomed follow manufacturer's recommendation (QIAGEN, Rneasy mini kit cat#74104)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 19 hr at 45C with 60 rpm rotation on Human genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymterix GeneChip scanner 3000.
| | Sample_data_processing | Data analysis was performed using the Affymetrix GeneChip operating system and analysis software. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jerry,,Tang
| | Sample_contact_email | jtang@gene.com
| | Sample_contact_institute | Genentech Inc
| | Sample_contact_address | 1 DNA Way MS 93
| | Sample_contact_city | south San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM302nnn/GSM302682/suppl/GSM302682.CEL.gz
| | Sample_series_id | GSE11959
| | Sample_data_row_count | 54675
| | |
|
GSM302683 | GPL570 |
|
24 hr 10H5, replicate 2
|
human SK-N-AS neuroblastoma xenografts, treated with 10H5 for 24 hr
|
Human neuroblastoma cell line SK-N-AS was implanated into nude mice and treated with anti-IGF1R antibody 10H5 for 24 hours
|
Gene expression data from SK-N-AS treated with 10H5 for 24 hours, replicate 2
|
| Sample_geo_accession | GSM302683
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Jul 01 2008
| | Sample_last_update_date | Jul 01 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Each mouse was dosed with either vehicle (PBS) or 10H5 (5 mg/kg) i.p.
| | Sample_growth_protocol_ch1 | SK-N-AS cells were grown in RPMI, with 10%FBS and 2mM L-Glutamine. 10 million SK-N-AS cells were inoculated into each nude mouse on the right flank subcutaneusly.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumors were collected at indicated time points flash frozen. RNA extraction procedure were perfomed follow manufacturer's recommendation (QIAGEN, Rneasy mini kit cat#74104)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 19 hr at 45C with 60 rpm rotation on Human genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymterix GeneChip scanner 3000.
| | Sample_data_processing | Data analysis was performed using the Affymetrix GeneChip operating system and analysis software. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jerry,,Tang
| | Sample_contact_email | jtang@gene.com
| | Sample_contact_institute | Genentech Inc
| | Sample_contact_address | 1 DNA Way MS 93
| | Sample_contact_city | south San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM302nnn/GSM302683/suppl/GSM302683.CEL.gz
| | Sample_series_id | GSE11959
| | Sample_data_row_count | 54675
| | |
|
GSM302684 | GPL570 |
|
24 hr 10H5, replicate 3
|
human SK-N-AS neuroblastoma xenografts, treated with 10H5 for 24 hr
|
Human neuroblastoma cell line SK-N-AS was implanated into nude mice and treated with anti-IGF1R antibody 10H5 for 24 hours
|
Gene expression data from SK-N-AS treated with 10H5 for 24 hours, replicate 3
|
| Sample_geo_accession | GSM302684
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Jul 01 2008
| | Sample_last_update_date | Jul 01 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Each mouse was dosed with either vehicle (PBS) or 10H5 (5 mg/kg) i.p.
| | Sample_growth_protocol_ch1 | SK-N-AS cells were grown in RPMI, with 10%FBS and 2mM L-Glutamine. 10 million SK-N-AS cells were inoculated into each nude mouse on the right flank subcutaneusly.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumors were collected at indicated time points flash frozen. RNA extraction procedure were perfomed follow manufacturer's recommendation (QIAGEN, Rneasy mini kit cat#74104)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 19 hr at 45C with 60 rpm rotation on Human genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymterix GeneChip scanner 3000.
| | Sample_data_processing | Data analysis was performed using the Affymetrix GeneChip operating system and analysis software. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jerry,,Tang
| | Sample_contact_email | jtang@gene.com
| | Sample_contact_institute | Genentech Inc
| | Sample_contact_address | 1 DNA Way MS 93
| | Sample_contact_city | south San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM302nnn/GSM302684/suppl/GSM302684.CEL.gz
| | Sample_series_id | GSE11959
| | Sample_data_row_count | 54675
| | |
|
GSM302685 | GPL570 |
|
24 hr 10H5, replicate 4
|
human SK-N-AS neuroblastoma xenografts, treated with 10H5 for 24 hr
|
Human neuroblastoma cell line SK-N-AS was implanated into nude mice and treated with anti-IGF1R antibody 10H5 for 24 hours
|
Gene expression data from SK-N-AS treated with 10H5 for 24 hours, replicate 4
|
| Sample_geo_accession | GSM302685
| | Sample_status | Public on Sep 01 2008
| | Sample_submission_date | Jul 01 2008
| | Sample_last_update_date | Jul 01 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Each mouse was dosed with either vehicle (PBS) or 10H5 (5 mg/kg) i.p.
| | Sample_growth_protocol_ch1 | SK-N-AS cells were grown in RPMI, with 10%FBS and 2mM L-Glutamine. 10 million SK-N-AS cells were inoculated into each nude mouse on the right flank subcutaneusly.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tumors were collected at indicated time points flash frozen. RNA extraction procedure were perfomed follow manufacturer's recommendation (QIAGEN, Rneasy mini kit cat#74104)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 19 hr at 45C with 60 rpm rotation on Human genome U133 Plus 2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymterix GeneChip scanner 3000.
| | Sample_data_processing | Data analysis was performed using the Affymetrix GeneChip operating system and analysis software. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jerry,,Tang
| | Sample_contact_email | jtang@gene.com
| | Sample_contact_institute | Genentech Inc
| | Sample_contact_address | 1 DNA Way MS 93
| | Sample_contact_city | south San Francisco
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94080
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM302nnn/GSM302685/suppl/GSM302685.CEL.gz
| | Sample_series_id | GSE11959
| | Sample_data_row_count | 54675
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