Search results for the GEO ID: GSE11971  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM303190 | GPL96 |
|
Muscle JDM (YJD-JDM-10UA-S2)
|
skeletal muscle, long duration
|
duration of untreated disease in month: 63.5
age at onset: 5.1
|
n/a
|
| Sample_geo_accession | GSM303190
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303190/suppl/GSM303190.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303190/suppl/GSM303190.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303191 | GPL96 |
|
Muscle JDM (YJD-JDM-12UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month: 20.6
age at onset: 6.0
|
n/a
|
| Sample_geo_accession | GSM303191
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303191/suppl/GSM303191.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303191/suppl/GSM303191.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303192 | GPL96 |
|
Muscle JDM (YJD-JDM-13UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:8.5
age at onset:4.5
|
n/a
|
| Sample_geo_accession | GSM303192
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303192/suppl/GSM303192.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303192/suppl/GSM303192.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303193 | GPL96 |
|
Muscle JDM (YJD-JDM-14UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:6.5
age at onset:7.7
|
n/a
|
| Sample_geo_accession | GSM303193
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303193/suppl/GSM303193.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303193/suppl/GSM303193.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303194 | GPL96 |
|
Muscle JDM (YJD-JDM-15UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:6.6
age at onset:6.1
|
n/a
|
| Sample_geo_accession | GSM303194
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303194/suppl/GSM303194.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303194/suppl/GSM303194.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303195 | GPL96 |
|
Muscle JDM (YJD-JDM-16UA-s2)
|
skeletal muscle, short duration
|
duration of untreated disease in month:0.6
age at onset:5.5
|
n/a
|
| Sample_geo_accession | GSM303195
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303195/suppl/GSM303195.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303195/suppl/GSM303195.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303196 | GPL96 |
|
Muscle JDM (YJD-JDM-18UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:16.1
age at onset:3.9
|
n/a
|
| Sample_geo_accession | GSM303196
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303196/suppl/GSM303196.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303196/suppl/GSM303196.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303197 | GPL96 |
|
Muscle JDM (YJD-JDM-19UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:6.1
age at onset:1.8
|
n/a
|
| Sample_geo_accession | GSM303197
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303197/suppl/GSM303197.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303197/suppl/GSM303197.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303198 | GPL96 |
|
Muscle JDM (YJD-JDM-1UA-s2)
|
skeletal muscle, short duration
|
duration of untreated disease in month:1.1
age at onset:6.8
|
n/a
|
| Sample_geo_accession | GSM303198
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303198/suppl/GSM303198.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303198/suppl/GSM303198.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303199 | GPL96 |
|
Muscle JDM (YJD-JDM-21UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:2.6
age at onset:8.8
|
n/a
|
| Sample_geo_accession | GSM303199
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303199/suppl/GSM303199.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303199/suppl/GSM303199.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303200 | GPL96 |
|
Muscle JDM (YJD-JDM-23UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:2.2
age at onset:7.2
|
n/a
|
| Sample_geo_accession | GSM303200
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303200/suppl/GSM303200.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303200/suppl/GSM303200.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303201 | GPL96 |
|
Muscle JDM (YJD-JDM-25UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:13.6
age at onset:2.5
|
n/a
|
| Sample_geo_accession | GSM303201
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303201/suppl/GSM303201.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303201/suppl/GSM303201.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303202 | GPL96 |
|
Muscle JDM (YJD-JDM-2UA-s2)
|
skeletal muscle, short duration
|
duration of untreated disease in month:1.1
age at onset:4.7
|
n/a
|
| Sample_geo_accession | GSM303202
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303202/suppl/GSM303202.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303202/suppl/GSM303202.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303203 | GPL96 |
|
Muscle JDM (YJD-JDM-30UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:30.6
age at onset:1.0
|
n/a
|
| Sample_geo_accession | GSM303203
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303203/suppl/GSM303203.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303203/suppl/GSM303203.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303204 | GPL96 |
|
Muscle JDM (YJD-JDM-3UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:7.7
age at onset:1.6
|
n/a
|
| Sample_geo_accession | GSM303204
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303204/suppl/GSM303204.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303204/suppl/GSM303204.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303205 | GPL96 |
|
Muscle control (YJD-JDM-48UA-s2)
|
skeletal muscle, normal control
|
control
control
|
n/a
|
| Sample_geo_accession | GSM303205
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303205/suppl/GSM303205.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303205/suppl/GSM303205.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303206 | GPL96 |
|
Muscle control (YJD-JDM-50UA-s2)
|
skeletal muscle, normal control
|
control
control
|
n/a
|
| Sample_geo_accession | GSM303206
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303206/suppl/GSM303206.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303206/suppl/GSM303206.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303207 | GPL96 |
|
Muscle control (YJD-JDM-51UA-s2)
|
skeletal muscle, normal control
|
control
control
|
n/a
|
| Sample_geo_accession | GSM303207
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303207/suppl/GSM303207.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303207/suppl/GSM303207.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303208 | GPL96 |
|
Muscle control (YJD-JDM-54UA-s2)
|
skeletal muscle, normal control
|
control
control
|
n/a
|
| Sample_geo_accession | GSM303208
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303208/suppl/GSM303208.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303208/suppl/GSM303208.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303209 | GPL96 |
|
Muscle JDM (YJD-JDM-5UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:2.1
age at onset:8.3
|
n/a
|
| Sample_geo_accession | GSM303209
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303209/suppl/GSM303209.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303209/suppl/GSM303209.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303210 | GPL96 |
|
Muscle JDM (YJD-JDM-6UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:3.2
age at onset:8.4
|
n/a
|
| Sample_geo_accession | GSM303210
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303210/suppl/GSM303210.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303210/suppl/GSM303210.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
| | |
|
GSM303211 | GPL96 |
|
Muscle JDM (YJD-JDM-8UA-s2)
|
skeletal muscle, long duration
|
duration of untreated disease in month:105.6
age at onset:2.6
|
n/a
|
| Sample_geo_accession | GSM303211
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303211/suppl/GSM303211.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303211/suppl/GSM303211.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
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GSM303212 | GPL96 |
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Muscle JDM (YJD-JDM-9UA-S2)
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skeletal muscle, long duration
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duration of untreated disease in month:4.9
age at onset:8.3
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n/a
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| Sample_geo_accession | GSM303212
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 02 2008
| | Sample_last_update_date | Jul 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | n/a
| | Sample_growth_protocol_ch1 | n/a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted according to the standard Affymetrix protocol including Trizol extraction and Rneasy column cleanup
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Human Genome U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 800.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Yi-Wen,,Chen
| | Sample_contact_email | ychen@cnmc.org
| | Sample_contact_department | Genetic Medicine Research
| | Sample_contact_institute | Children's Research Institute
| | Sample_contact_address | 111 Michigan Ave NW
| | Sample_contact_city | Washington
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303212/suppl/GSM303212.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303212/suppl/GSM303212.CHP.gz
| | Sample_series_id | GSE11971
| | Sample_data_row_count | 22283
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