Search results for the GEO ID: GSE11982  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM303312 | GPL1261 |
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WT adult murine BM, LMPP (LIN-SCA1+KIT+FLT3hi) #1
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Murine BM from C57bl/6 mice
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Wild type C57bl/6
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Gene expression data from WT LMPP cells FACS sorted from adult BM
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| Sample_geo_accession | GSM303312
| | Sample_status | Public on Aug 31 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3’amplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP files.
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Robert,,Månsson
| | Sample_contact_email | robert.mansson@ki.se
| | Sample_contact_department | Hemapotoietic stem cell biology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Klinikgatan 26, BMC B12
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303312/suppl/GSM303312.CEL.gz
| | Sample_series_id | GSE11982
| | Sample_data_row_count | 45101
| | |
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GSM303313 | GPL1261 |
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WT adult murine BM, LMPP (LIN-SCA1+KIT+FLT3hi) #2
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Murine BM from C57bl/6 mice
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Wild type C57bl/6
|
Gene expression data from WT LMPP cells FACS sorted from adult BM
|
| Sample_geo_accession | GSM303313
| | Sample_status | Public on Aug 31 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3’amplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP files.
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Robert,,Månsson
| | Sample_contact_email | robert.mansson@ki.se
| | Sample_contact_department | Hemapotoietic stem cell biology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Klinikgatan 26, BMC B12
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303313/suppl/GSM303313.CEL.gz
| | Sample_series_id | GSE11982
| | Sample_data_row_count | 45101
| | |
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GSM303314 | GPL1261 |
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E2A-KO adult murine BM, LMPP (LIN-SCA1+KIT+FLT3hi) #1
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Murine BM from E2A-KO mice on C57bl/6 background.
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E2A-KO C57bl/6
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Gene expression data from WT LMPP cells FACS sorted from adult BM
|
| Sample_geo_accession | GSM303314
| | Sample_status | Public on Aug 31 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3’amplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP files.
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Robert,,Månsson
| | Sample_contact_email | robert.mansson@ki.se
| | Sample_contact_department | Hemapotoietic stem cell biology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Klinikgatan 26, BMC B12
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303314/suppl/GSM303314.CEL.gz
| | Sample_series_id | GSE11982
| | Sample_data_row_count | 45101
| | |
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GSM303315 | GPL1261 |
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E2A-KO adult murine BM, LMPP (LIN-SCA1+KIT+FLT3hi) #2
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Murine BM from E2A-KO mice on C57bl/6 background.
|
E2A-KO C57bl/6
|
Gene expression data from WT LMPP cells FACS sorted from adult BM
|
| Sample_geo_accession | GSM303315
| | Sample_status | Public on Aug 31 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3’amplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP files.
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Robert,,Månsson
| | Sample_contact_email | robert.mansson@ki.se
| | Sample_contact_department | Hemapotoietic stem cell biology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Klinikgatan 26, BMC B12
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303315/suppl/GSM303315.CEL.gz
| | Sample_series_id | GSE11982
| | Sample_data_row_count | 45101
| | |
|
GSM303316 | GPL1261 |
|
WT adult murine BM, LSK FLT3- (LIN-SCA1+KIT+FLT3-) #1
|
Murine BM from C57bl/6 mice
|
Wild type C57bl/6
|
Gene expression data from WT LMPP cells FACS sorted from adult BM
|
| Sample_geo_accession | GSM303316
| | Sample_status | Public on Aug 31 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3’amplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP files.
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Robert,,Månsson
| | Sample_contact_email | robert.mansson@ki.se
| | Sample_contact_department | Hemapotoietic stem cell biology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Klinikgatan 26, BMC B12
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303316/suppl/GSM303316.CEL.gz
| | Sample_series_id | GSE11982
| | Sample_data_row_count | 45101
| | |
|
GSM303317 | GPL1261 |
|
WT adult murine BM, LSK FLT3- (LIN-SCA1+KIT+FLT3-) #2
|
Murine BM from C57bl/6 mice
|
Wild type C57bl/6
|
Gene expression data from WT LMPP cells FACS sorted from adult BM
|
| Sample_geo_accession | GSM303317
| | Sample_status | Public on Aug 31 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 08 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were directly sorted into buffer RLT and RNA prepared using RNeasy Micro (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard AffymetrixTM; Small Sample Labelling Protocol v.2, with the exception that the second round of in vitro transcription (IVT) was performed using AffymetrixTM GeneChipTM Expression 3’amplification kit.
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA was hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | Chips were scanned using an Affymetrix GeneChip Scanner 3000. Chip target intensity was arbitrarily scaled to 100 before rendering CHP files.
| | Sample_data_processing | Expression values were calculated by RMA express (http://rmaexpress.bmbolstad.com/) using background adjustment and quantile normalization.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Robert,,Månsson
| | Sample_contact_email | robert.mansson@ki.se
| | Sample_contact_department | Hemapotoietic stem cell biology
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Klinikgatan 26, BMC B12
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303317/suppl/GSM303317.CEL.gz
| | Sample_series_id | GSE11982
| | Sample_data_row_count | 45101
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