Search results for the GEO ID: GSE11987  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM303371 | GPL1355 |
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transformed by GLI1, biological rep1
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transformed cells by GLI1
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kidney cell
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Gene expression data from RK3E cells transformed by GLI1.
|
| Sample_geo_accession | GSM303371
| | Sample_status | Public on Mar 25 2009
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Mar 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | RK3E cells were maintained in DMEM supplemented with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 400,000 RK3E cells in 60mm dish was transfected with 4 ug of GLI1 expression construct and 12 ul Lipofectamine 2000.
| | Sample_extract_protocol_ch1 | transformed cells form foci. The individual focus was isolated and was maintained.
| | Sample_extract_protocol_ch1 | total RNA was purified according to the manufacturer's instructions (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr on Rat 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Joon Won,,Yoon
| | Sample_contact_email | j-yoon2@northwestern.edu
| | Sample_contact_institute | Children's Memorial Reseach Center
| | Sample_contact_address | 2430 N Halsted
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60614
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303371/suppl/GSM303371.CEL.gz
| | Sample_series_id | GSE11987
| | Sample_data_row_count | 31099
| | |
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GSM303372 | GPL1355 |
|
transformed by GLI1 clone I, biological rep2
|
transformed cells by GLI1
|
kidney cell
|
Gene expression data from RK3E cells transformed by GLI1.
|
| Sample_geo_accession | GSM303372
| | Sample_status | Public on Mar 25 2009
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Mar 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | RK3E cells were maintained in DMEM supplemented with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 400,000 RK3E cells in 60mm dish was transfected with 4 ug of GLI1 expression construct and 12 ul Lipofectamine 2000.
| | Sample_extract_protocol_ch1 | transformed cells form foci. The individual focus was isolated and was maintained.
| | Sample_extract_protocol_ch1 | total RNA was purified according to the manufacturer's instructions (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr on Rat 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Joon Won,,Yoon
| | Sample_contact_email | j-yoon2@northwestern.edu
| | Sample_contact_institute | Children's Memorial Reseach Center
| | Sample_contact_address | 2430 N Halsted
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60614
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303372/suppl/GSM303372.CEL.gz
| | Sample_series_id | GSE11987
| | Sample_data_row_count | 31099
| | |
|
GSM303373 | GPL1355 |
|
transformed by GLI1 clone II, biological rep1
|
transformed cells by GLI1
|
kidney cell
|
Gene expression data from RK3E cells transformed by GLI1.
|
| Sample_geo_accession | GSM303373
| | Sample_status | Public on Mar 25 2009
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Mar 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | RK3E cells were maintained in DMEM supplemented with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 400,000 RK3E cells in 60mm dish was transfected with 4 ug of GLI1 expression construct and 12 ul Lipofectamine 2000.
| | Sample_extract_protocol_ch1 | transformed cells form foci. The individual focus was isolated and was maintained.
| | Sample_extract_protocol_ch1 | total RNA was purified according to the manufacturer's instructions (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr on Rat 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Joon Won,,Yoon
| | Sample_contact_email | j-yoon2@northwestern.edu
| | Sample_contact_institute | Children's Memorial Reseach Center
| | Sample_contact_address | 2430 N Halsted
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60614
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303373/suppl/GSM303373.CEL.gz
| | Sample_series_id | GSE11987
| | Sample_data_row_count | 31099
| | |
|
GSM303374 | GPL1355 |
|
transformed by GLI1 clone II, biological rep2
|
transformed cells by GLI1
|
kidney cell
|
Gene expression data from RK3E cells transformed by GLI1.
|
| Sample_geo_accession | GSM303374
| | Sample_status | Public on Mar 25 2009
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Mar 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | RK3E cells were maintained in DMEM supplemented with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 400,000 RK3E cells in 60mm dish was transfected with 4 ug of GLI1 expression construct and 12 ul Lipofectamine 2000.
| | Sample_extract_protocol_ch1 | transformed cells form foci. The individual focus was isolated and was maintained.
| | Sample_extract_protocol_ch1 | total RNA was purified according to the manufacturer's instructions (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr on Rat 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Joon Won,,Yoon
| | Sample_contact_email | j-yoon2@northwestern.edu
| | Sample_contact_institute | Children's Memorial Reseach Center
| | Sample_contact_address | 2430 N Halsted
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60614
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303374/suppl/GSM303374.CEL.gz
| | Sample_series_id | GSE11987
| | Sample_data_row_count | 31099
| | |
|
GSM303375 | GPL1355 |
|
parental RK3E, biological rep1
|
RK3E cells
|
kidney cell
|
Gene expression data from RK3E cells.
|
| Sample_geo_accession | GSM303375
| | Sample_status | Public on Mar 25 2009
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Mar 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | RK3E cells were maintained in DMEM supplemented with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 400,000 RK3E cells in 60mm dish was transfected with 4 ug of GLI1 expression construct and 12 ul Lipofectamine 2000.
| | Sample_extract_protocol_ch1 | transformed cells form foci. The individual focus was isolated and was maintained.
| | Sample_extract_protocol_ch1 | total RNA was purified according to the manufacturer's instructions (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr on Rat 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Joon Won,,Yoon
| | Sample_contact_email | j-yoon2@northwestern.edu
| | Sample_contact_institute | Children's Memorial Reseach Center
| | Sample_contact_address | 2430 N Halsted
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60614
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303375/suppl/GSM303375.CEL.gz
| | Sample_series_id | GSE11987
| | Sample_data_row_count | 31099
| | |
|
GSM303376 | GPL1355 |
|
parental RK3E, biological rep2
|
RK3E cells
|
kidney cell
|
Gene expression data from RK3E cells.
|
| Sample_geo_accession | GSM303376
| | Sample_status | Public on Mar 25 2009
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Mar 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_growth_protocol_ch1 | RK3E cells were maintained in DMEM supplemented with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 400,000 RK3E cells in 60mm dish was transfected with 4 ug of GLI1 expression construct and 12 ul Lipofectamine 2000.
| | Sample_extract_protocol_ch1 | transformed cells form foci. The individual focus was isolated and was maintained.
| | Sample_extract_protocol_ch1 | total RNA was purified according to the manufacturer's instructions (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, 20 ug of cRNA were hybridized for 16 hr on Rat 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Joon Won,,Yoon
| | Sample_contact_email | j-yoon2@northwestern.edu
| | Sample_contact_institute | Children's Memorial Reseach Center
| | Sample_contact_address | 2430 N Halsted
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60614
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303376/suppl/GSM303376.CEL.gz
| | Sample_series_id | GSE11987
| | Sample_data_row_count | 31099
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