Search results for the GEO ID: GSE12003  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM303493 | GPL1261 |
|
4 days cultures from wild-type mouse bone marrow progenitors - Rep 1
|
4 days cultured BM progenitors from wild-type mouse bone marrow
|
mRNA profiling of 4 days cultures from wild-type mouse bone marrow progenitors - Rep 1
|
mRNA expression profile comparison between wild-type cultured murine neutrophils versus miR-223 null cultured murine neutrophils during development of BM progenitors to mature neutrophils. This data shows expression profile of mRNAs from 4 days cultured progenitors from wild-type mouse bone marrow.
|
| Sample_geo_accession | GSM303493
| | Sample_status | Public on Jul 30 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were sorted for ckit-PE positive and Gr-1-APC negative population using FACSAria (BD Biosciences).
| | Sample_growth_protocol_ch1 | BM-progenitors were cultured in SILAC-IMDM with G-CSF and SCF for 4 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri Reagent (Ambion) followed by RNeasy Plus (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affy Standard Labeling Protocol
| | Sample_hyb_protocol | Affy Standard Hyb Protocol
| | Sample_scan_protocol | Affy Scan Protocol
| | Sample_data_processing | GCOS and RMAExpress software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Whitehead,,Institute
| | Sample_contact_email | sgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0339
| | Sample_contact_fax | 617-258-8896
| | Sample_contact_department | Genome Technology Core
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://wi.mit.edu/cmt/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303493/suppl/GSM303493.CEL.gz
| | Sample_series_id | GSE12003
| | Sample_series_id | GSE12075
| | Sample_data_row_count | 45101
| | |
|
GSM303495 | GPL1261 |
|
4 days cultures from miR-223 null mouse bone marrow progenitors - Rep 1
|
4 days cultured BM progenitors from miR-223 null mouse bone marrow
|
mRNA profiling of 4 days cultures from miR-223 null mouse bone marrow progenitors - Rep 1
|
mRNA expression profile comparison between wild-type cultured murine neutrophils versus miR-223 null cultured murine neutrophils during development of BM progenitors to mature neutrophils. This data shows expression profile of mRNAs from 4 days cultured progenitors from miR-223 null mouse bone marrow.
|
| Sample_geo_accession | GSM303495
| | Sample_status | Public on Jul 30 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were sorted for ckit-PE positive and Gr-1-APC negative population using FACSAria (BD Biosciences).
| | Sample_growth_protocol_ch1 | BM-progenitors were cultured in SILAC-IMDM with G-CSF and SCF for 4 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri Reagent (Ambion) followed by RNeasy Plus (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affy Standard Labeling Protocol
| | Sample_hyb_protocol | Affy Standard Hyb Protocol
| | Sample_scan_protocol | Affy Scan Protocol
| | Sample_data_processing | GCOS and RMAExpress software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Whitehead,,Institute
| | Sample_contact_email | sgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0339
| | Sample_contact_fax | 617-258-8896
| | Sample_contact_department | Genome Technology Core
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://wi.mit.edu/cmt/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303495/suppl/GSM303495.CEL.gz
| | Sample_series_id | GSE12003
| | Sample_series_id | GSE12075
| | Sample_data_row_count | 45101
| | |
|
GSM303497 | GPL1261 |
|
8 days cultures from wild-type mouse bone marrow progenitors - Rep 1
|
8 day cultured and sorted mature neutrophils
|
Expression profile of mRNAs of 8 days cultured and sorted mature neutrophls from wild-type mouse bone marrow progenitors - Rep 1
|
mRNA expression profile comparison between wild-type cultured murine neutrophils versus miR-223 null cultured murine neutrophils during development of BM progenitors to mature neutrophils. This data shows expression profile of mRNAs from 8 days cultured and sorted mature neutrophils from wild-type mouse bone marrow.
|
| Sample_geo_accession | GSM303497
| | Sample_status | Public on Jul 30 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were sorted for ckit-PE negative and Gr-1-APC positive population using FACSAria (BD Biosciences).
| | Sample_growth_protocol_ch1 | BM-progenitors were cultured in SILAC-IMDM with G-CSF and SCF for 6 days and subsequent culture without SCF for 42 hours.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri Reagent (Ambion) followed by RNeasy Plus (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affy Standard Labeling Protocol
| | Sample_hyb_protocol | Affy Standard Hyb Protocol
| | Sample_scan_protocol | Affy Scan Protocol
| | Sample_data_processing | GCOS and RMAExpress software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Whitehead,,Institute
| | Sample_contact_email | sgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0339
| | Sample_contact_fax | 617-258-8896
| | Sample_contact_department | Genome Technology Core
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://wi.mit.edu/cmt/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303497/suppl/GSM303497.CEL.gz
| | Sample_series_id | GSE12003
| | Sample_series_id | GSE12075
| | Sample_data_row_count | 45101
| | |
|
GSM303499 | GPL1261 |
|
8 days cultures from miR-223 null mouse bone marrow progenitors - Rep 1
|
8 day cultured and sorted mature neutrophils
|
Expression profile of mRNAs of 8 days cultured and sorted mature neutrophls from miR-223 null mouse bone marrow progenitors - Rep 1
|
mRNA expression profile comparison between wild-type cultured murine neutrophils versus miR-223 null cultured murine neutrophils during development of BM progenitors to mature neutrophils. This data shows expression profile of mRNAs from 8 days cultured and sorted mature neutrophils from miR-223 null mouse bone marrow.
|
| Sample_geo_accession | GSM303499
| | Sample_status | Public on Jul 30 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were sorted for ckit-PE negative and Gr-1-APC positive population using FACSAria (BD Biosciences).
| | Sample_growth_protocol_ch1 | BM-progenitors were cultured in SILAC-IMDM with G-CSF and SCF for 6 days and subsequent culture without SCF for 42 hours.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri Reagent (Ambion) followed by RNeasy Plus (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affy Standard Labeling Protocol
| | Sample_hyb_protocol | Affy Standard Hyb Protocol
| | Sample_scan_protocol | Affy Scan Protocol
| | Sample_data_processing | GCOS and RMAExpress software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Whitehead,,Institute
| | Sample_contact_email | sgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0339
| | Sample_contact_fax | 617-258-8896
| | Sample_contact_department | Genome Technology Core
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://wi.mit.edu/cmt/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303499/suppl/GSM303499.CEL.gz
| | Sample_series_id | GSE12003
| | Sample_series_id | GSE12075
| | Sample_data_row_count | 45101
| | |
|
GSM303500 | GPL1261 |
|
4 days cultures from wild-type mouse bone marrow progenitors - Rep 2
|
4 days cultured BM progenitors from wild-type mouse bone marrow
|
mRNA profiling of 4 days cultures from wild-type mouse bone marrow progenitors - Rep 2
|
mRNA expression profile comparison between wild-type cultured murine neutrophils versus miR-223 null cultured murine neutrophils during development of BM progenitors to mature neutrophils. This data shows expression profile of mRNAs from 4 days cultured progenitors from wild-type mouse bone marrow.
|
| Sample_geo_accession | GSM303500
| | Sample_status | Public on Jul 30 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were sorted for ckit-PE positive and Gr-1-APC negative population using FACSAria (BD Biosciences).
| | Sample_growth_protocol_ch1 | BM-progenitors were cultured in SILAC-IMDM with G-CSF and SCF for 4 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri Reagent (Ambion) followed by RNeasy Plus (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affy Standard Labeling Protocol
| | Sample_hyb_protocol | Affy Standard Hyb Protocol
| | Sample_scan_protocol | Affy Scan Protocol
| | Sample_data_processing | GCOS and RMAExpress software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Whitehead,,Institute
| | Sample_contact_email | sgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0339
| | Sample_contact_fax | 617-258-8896
| | Sample_contact_department | Genome Technology Core
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://wi.mit.edu/cmt/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303500/suppl/GSM303500.CEL.gz
| | Sample_series_id | GSE12003
| | Sample_series_id | GSE12075
| | Sample_data_row_count | 45101
| | |
|
GSM303501 | GPL1261 |
|
4 days cultures from miR-223 null mouse bone marrow progenitors - Rep 2
|
4 days cultured BM progenitors from miR-223 null mouse
|
mRNA profiling of 4 days cultures from miR-223 null mouse bone marrow progenitors - Rep 2
|
mRNA expression profile comparison between wild-type cultured murine neutrophils versus miR-223 null cultured murine neutrophils during development of BM progenitors to mature neutrophils. This data shows expression profile of mRNAs from 4 days cultured progenitors from miR-223 null mouse bone marrow.
|
| Sample_geo_accession | GSM303501
| | Sample_status | Public on Jul 30 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were sorted for ckit-PE positive and Gr-1-APC negative population using FACSAria (BD Biosciences).
| | Sample_growth_protocol_ch1 | BM-progenitors were cultured in SILAC-IMDM with G-CSF and SCF for 4 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri Reagent (Ambion) followed by RNeasy Plus (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affy Standard Labeling Protocol
| | Sample_hyb_protocol | Affy Standard Hyb Protocol
| | Sample_scan_protocol | Affy Scan Protocol
| | Sample_data_processing | GCOS and RMAExpress software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Whitehead,,Institute
| | Sample_contact_email | sgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0339
| | Sample_contact_fax | 617-258-8896
| | Sample_contact_department | Genome Technology Core
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://wi.mit.edu/cmt/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303501/suppl/GSM303501.CEL.gz
| | Sample_series_id | GSE12003
| | Sample_series_id | GSE12075
| | Sample_data_row_count | 45101
| | |
|
GSM303502 | GPL1261 |
|
8 days cultures from wild-type mouse bone marrow progenitors - Rep 2
|
8 day cultured and sorted mature neutrophils
|
Expression profile of mRNAs of 8 days cultured and sorted mature neutrophls from wild-type mouse bone marrow progenitors - Rep 2
|
mRNA expression profile comparison between wild-type cultured murine neutrophils versus miR-223 null cultured murine neutrophils during development of BM progenitors to mature neutrophils. This data shows expression profile of mRNAs from 8 days cultured and sorted mature neutrophils from wild-type mouse bone marrow.
|
| Sample_geo_accession | GSM303502
| | Sample_status | Public on Jul 30 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were sorted for ckit-PE negative and Gr-1-APC positive population using FACSAria (BD Biosciences).
| | Sample_growth_protocol_ch1 | BM-progenitors were cultured in SILAC-IMDM with G-CSF and SCF for 6 days and subsequent culture without SCF for 42 hours.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri Reagent (Ambion) followed by RNeasy Plus (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affy Standard Labeling Protocol
| | Sample_hyb_protocol | Affy Standard Hyb Protocol
| | Sample_scan_protocol | Affy Scan Protocol
| | Sample_data_processing | GCOS and RMAExpress software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Whitehead,,Institute
| | Sample_contact_email | sgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0339
| | Sample_contact_fax | 617-258-8896
| | Sample_contact_department | Genome Technology Core
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://wi.mit.edu/cmt/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303502/suppl/GSM303502.CEL.gz
| | Sample_series_id | GSE12003
| | Sample_series_id | GSE12075
| | Sample_data_row_count | 45101
| | |
|
GSM303503 | GPL1261 |
|
8 days cultures from miR-223 null mouse bone marrow progenitors - Rep 2
|
8 day cultured and sorted mature neutrophils
|
Expression profile of mRNAs of 8 days cultured and sorted mature neutrophls from miR-223 mouse bone marrow progenitors - Rep 2
|
mRNA expression profile comparison between wild-type cultured murine neutrophils versus miR-223 null cultured murine neutrophils during development of BM progenitors to mature neutrophils. This data shows expression profile of mRNAs from 8 days cultured and sorted mature neutrophils from miR-223 null mouse bone marrow.
|
| Sample_geo_accession | GSM303503
| | Sample_status | Public on Jul 30 2008
| | Sample_submission_date | Jul 03 2008
| | Sample_last_update_date | Jul 16 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were sorted for ckit-PE negative and Gr-1-APC positive population using FACSAria (BD Biosciences).
| | Sample_growth_protocol_ch1 | BM-progenitors were cultured in SILAC-IMDM with G-CSF and SCF for 6 days and subsequent culture without SCF for 42 hours.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tri Reagent (Ambion) followed by RNeasy Plus (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affy Standard Labeling Protocol
| | Sample_hyb_protocol | Affy Standard Hyb Protocol
| | Sample_scan_protocol | Affy Scan Protocol
| | Sample_data_processing | GCOS and RMAExpress software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Whitehead,,Institute
| | Sample_contact_email | sgupta@wi.mit.edu
| | Sample_contact_phone | 617-324-0339
| | Sample_contact_fax | 617-258-8896
| | Sample_contact_department | Genome Technology Core
| | Sample_contact_institute | Whitehead Institute
| | Sample_contact_address | 9 Cambridge Center
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02141
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://wi.mit.edu/cmt/
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM303nnn/GSM303503/suppl/GSM303503.CEL.gz
| | Sample_series_id | GSE12003
| | Sample_series_id | GSE12075
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
