Search results for the GEO ID: GSE12049  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM304403 | GPL1261 |
|
wt muscle 1, biological rep 1
|
wild type mouse
|
normal
|
gene expression data from 4 weeks old wildtype mouse hind limb skeletal muscle
|
| Sample_geo_accession | GSM304403
| | Sample_status | Public on Jul 10 2008
| | Sample_submission_date | Jul 09 2008
| | Sample_last_update_date | Jul 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA and further purified using the RNeasy Mini Kit (Qiagen) was used according to the manufacturers’ instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Swegene Microarray Resource Centre (Lund, Sweden).
| | Sample_hyb_protocol | After fragmentation of the cRNA, 15 μg cRNA in 200 μl hybridisation cocktail was hybridised onto Affymetrix MOE430 2.0 microarray chip for 16 h at 45 °C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with dChip 2004. After array normalization (default analysis settings) the model-based expression values were calculated using the PM-only model
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mattias,Carl,Häger
| | Sample_contact_email | Mattias.Hager@med.lu.se
| | Sample_contact_laboratory | Muscle Biology
| | Sample_contact_department | Expreimental Biology
| | Sample_contact_institute | Lunds University
| | Sample_contact_address | BMC, B12
| | Sample_contact_city | LUND
| | Sample_contact_state | M
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304403/suppl/GSM304403.CEL.gz
| | Sample_series_id | GSE12049
| | Sample_data_row_count | 45101
| | |
|
GSM304404 | GPL1261 |
|
wt muscle 2, biological rep 2
|
wild type mouse
|
normal
|
gene expression data from 4 weeks old wildtype mouse hind limb skeletal muscle
|
| Sample_geo_accession | GSM304404
| | Sample_status | Public on Jul 10 2008
| | Sample_submission_date | Jul 09 2008
| | Sample_last_update_date | Jul 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA and further purified using the RNeasy Mini Kit (Qiagen) was used according to the manufacturers’ instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Swegene Microarray Resource Centre (Lund, Sweden).
| | Sample_hyb_protocol | After fragmentation of the cRNA, 15 μg cRNA in 200 μl hybridisation cocktail was hybridised onto Affymetrix MOE430 2.0 microarray chip for 16 h at 45 °C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with dChip 2004. After array normalization (default analysis settings) the model-based expression values were calculated using the PM-only model
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mattias,Carl,Häger
| | Sample_contact_email | Mattias.Hager@med.lu.se
| | Sample_contact_laboratory | Muscle Biology
| | Sample_contact_department | Expreimental Biology
| | Sample_contact_institute | Lunds University
| | Sample_contact_address | BMC, B12
| | Sample_contact_city | LUND
| | Sample_contact_state | M
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304404/suppl/GSM304404.CEL.gz
| | Sample_series_id | GSE12049
| | Sample_data_row_count | 45101
| | |
|
GSM304405 | GPL1261 |
|
wt muscle 3, biological rep 3
|
wild type mouse
|
normal
|
gene expression data from 4 weeks old wildtype mouse hind limb skeletal muscle
|
| Sample_geo_accession | GSM304405
| | Sample_status | Public on Jul 10 2008
| | Sample_submission_date | Jul 09 2008
| | Sample_last_update_date | Jul 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA and further purified using the RNeasy Mini Kit (Qiagen) was used according to the manufacturers’ instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Swegene Microarray Resource Centre (Lund, Sweden).
| | Sample_hyb_protocol | After fragmentation of the cRNA, 15 μg cRNA in 200 μl hybridisation cocktail was hybridised onto Affymetrix MOE430 2.0 microarray chip for 16 h at 45 °C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with dChip 2004. After array normalization (default analysis settings) the model-based expression values were calculated using the PM-only model
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mattias,Carl,Häger
| | Sample_contact_email | Mattias.Hager@med.lu.se
| | Sample_contact_laboratory | Muscle Biology
| | Sample_contact_department | Expreimental Biology
| | Sample_contact_institute | Lunds University
| | Sample_contact_address | BMC, B12
| | Sample_contact_city | LUND
| | Sample_contact_state | M
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304405/suppl/GSM304405.CEL.gz
| | Sample_series_id | GSE12049
| | Sample_data_row_count | 45101
| | |
|
GSM304406 | GPL1261 |
|
kn muscle 1, biological rep 1
|
laminin alpha 2 chain deficient mouse
|
dy3K/dy3K, mouse model for congenital muscular dystrophy type 1 A
|
gene expression data from 4 weeks old laminin alpah 2 chain deficient mouse hind limb skeletal muscle
|
| Sample_geo_accession | GSM304406
| | Sample_status | Public on Jul 10 2008
| | Sample_submission_date | Jul 09 2008
| | Sample_last_update_date | Jul 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA and further purified using the RNeasy Mini Kit (Qiagen) was used according to the manufacturers’ instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Swegene Microarray Resource Centre (Lund, Sweden).
| | Sample_hyb_protocol | After fragmentation of the cRNA, 15 μg cRNA in 200 μl hybridisation cocktail was hybridised onto Affymetrix MOE430 2.0 microarray chip for 16 h at 45 °C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with dChip 2004. After array normalization (default analysis settings) the model-based expression values were calculated using the PM-only model
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mattias,Carl,Häger
| | Sample_contact_email | Mattias.Hager@med.lu.se
| | Sample_contact_laboratory | Muscle Biology
| | Sample_contact_department | Expreimental Biology
| | Sample_contact_institute | Lunds University
| | Sample_contact_address | BMC, B12
| | Sample_contact_city | LUND
| | Sample_contact_state | M
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304406/suppl/GSM304406.CEL.gz
| | Sample_series_id | GSE12049
| | Sample_data_row_count | 45101
| | |
|
GSM304407 | GPL1261 |
|
kn muscle 2, biological rep 2
|
laminin alpha 2 chain deficient mouse
|
dy3K/dy3K, mouse model for congenital muscular dystrophy type 1 A
|
gene expression data from 4 weeks old laminin alpah 2 chain deficient mouse hind limb skeletal muscle
|
| Sample_geo_accession | GSM304407
| | Sample_status | Public on Jul 10 2008
| | Sample_submission_date | Jul 09 2008
| | Sample_last_update_date | Jul 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA and further purified using the RNeasy Mini Kit (Qiagen) was used according to the manufacturers’ instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Swegene Microarray Resource Centre (Lund, Sweden).
| | Sample_hyb_protocol | After fragmentation of the cRNA, 15 μg cRNA in 200 μl hybridisation cocktail was hybridised onto Affymetrix MOE430 2.0 microarray chip for 16 h at 45 °C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with dChip 2004. After array normalization (default analysis settings) the model-based expression values were calculated using the PM-only model
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mattias,Carl,Häger
| | Sample_contact_email | Mattias.Hager@med.lu.se
| | Sample_contact_laboratory | Muscle Biology
| | Sample_contact_department | Expreimental Biology
| | Sample_contact_institute | Lunds University
| | Sample_contact_address | BMC, B12
| | Sample_contact_city | LUND
| | Sample_contact_state | M
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304407/suppl/GSM304407.CEL.gz
| | Sample_series_id | GSE12049
| | Sample_data_row_count | 45101
| | |
|
GSM304408 | GPL1261 |
|
kn muscle 3, biological rep 3
|
laminin alpha 2 chain deficient mouse
|
dy3K/dy3K, mouse model for congenital muscular dystrophy type 1 A
|
gene expression data from 4 weeks old laminin alpah 2 chain deficient mouse hind limb skeletal muscle
|
| Sample_geo_accession | GSM304408
| | Sample_status | Public on Jul 10 2008
| | Sample_submission_date | Jul 09 2008
| | Sample_last_update_date | Jul 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA and further purified using the RNeasy Mini Kit (Qiagen) was used according to the manufacturers’ instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Swegene Microarray Resource Centre (Lund, Sweden).
| | Sample_hyb_protocol | After fragmentation of the cRNA, 15 μg cRNA in 200 μl hybridisation cocktail was hybridised onto Affymetrix MOE430 2.0 microarray chip for 16 h at 45 °C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000.
| | Sample_data_processing | The data were analyzed with dChip 2004. After array normalization (default analysis settings) the model-based expression values were calculated using the PM-only model
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mattias,Carl,Häger
| | Sample_contact_email | Mattias.Hager@med.lu.se
| | Sample_contact_laboratory | Muscle Biology
| | Sample_contact_department | Expreimental Biology
| | Sample_contact_institute | Lunds University
| | Sample_contact_address | BMC, B12
| | Sample_contact_city | LUND
| | Sample_contact_state | M
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304408/suppl/GSM304408.CEL.gz
| | Sample_series_id | GSE12049
| | Sample_data_row_count | 45101
| | |
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