Search results for the GEO ID: GSE12056 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM304303 | GPL570 |
|
K562 cells control replicate 1
|
K562 cells
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days.
|
None
|
Sample_geo_accession | GSM304303
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 08 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304303/suppl/GSM304303_77463-77443.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304304 | GPL570 |
|
K562 cells control replicate 2
|
K562 cells
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days.
|
None
|
Sample_geo_accession | GSM304304
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 08 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_data_processing | MAS 5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304304/suppl/GSM304304_77472-77452.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304479 | GPL570 |
|
K562 cells control replicate 3
|
K562 cells
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days
|
none
|
Sample_geo_accession | GSM304479
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304479/suppl/GSM304479_77464-77444.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304480 | GPL570 |
|
K562 cells control replicate 5
|
K562 cells
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days
|
none
|
Sample_geo_accession | GSM304480
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304480/suppl/GSM304480_77466-77446.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304481 | GPL570 |
|
K562 cells control replicate 6
|
K562 cells
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days
|
none
|
Sample_geo_accession | GSM304481
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304481/suppl/GSM304481_77467-77447.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304482 | GPL570 |
|
K562 cells control replicate 7
|
K562 cells
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days
|
none
|
Sample_geo_accession | GSM304482
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304482/suppl/GSM304482_77468-77448.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304483 | GPL570 |
|
K562 cells control replicate 8
|
K562 cells
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days
|
none
|
Sample_geo_accession | GSM304483
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304483/suppl/GSM304483_77469-77449.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304484 | GPL570 |
|
K562 cells control replicate 9
|
K562 cells
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days
|
none
|
Sample_geo_accession | GSM304484
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304484/suppl/GSM304484_77470-77450.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304486 | GPL570 |
|
K562 cells control replicate 10
|
K562 cells
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days
|
none
|
Sample_geo_accession | GSM304486
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304486/suppl/GSM304486_77471-77451.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304487 | GPL570 |
|
K562 cells CREB Knock-out replicate 1
|
K562 cells CREB Knock-out
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
|
none
|
Sample_geo_accession | GSM304487
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304487/suppl/GSM304487_77473-77453.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304488 | GPL570 |
|
K562 cells CREB Knock-out replicate 2
|
K562 cells CREB Knock-out
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. . The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
|
none
|
Sample_geo_accession | GSM304488
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304488/suppl/GSM304488_77482-77462.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304489 | GPL570 |
|
K562 cells CREB Knock-out replicate 3
|
K562 cells CREB Knock-out
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
|
none
|
Sample_geo_accession | GSM304489
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304489/suppl/GSM304489_77474-77454.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304490 | GPL570 |
|
K562 cells CREB Knock-out replicate 4
|
K562 cells CREB Knock-out
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
|
none
|
Sample_geo_accession | GSM304490
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304490/suppl/GSM304490_77475-77455.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304491 | GPL570 |
|
K562 cells CREB Knock-out replicate 5
|
K562 cells CREB Knock-out
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
|
none
|
Sample_geo_accession | GSM304491
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304491/suppl/GSM304491_77476-77456.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304492 | GPL570 |
|
K562 cells CREB Knock-out replicate 6
|
K562 cells CREB Knock-out
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. . The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
|
none
|
Sample_geo_accession | GSM304492
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304492/suppl/GSM304492_77477-77457.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304493 | GPL570 |
|
K562 cells CREB Knock-out replicate 7
|
K562 cells CREB Knock-out
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
|
none
|
Sample_geo_accession | GSM304493
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304493/suppl/GSM304493_77478-77458.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304494 | GPL570 |
|
K562 cells CREB Knock-out replicate 8
|
K562 cells CREB Knock-out
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
|
none
|
Sample_geo_accession | GSM304494
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304494/suppl/GSM304494_77479-77459.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304495 | GPL570 |
|
K562 cells CREB Knock-out replicate 9
|
K562 cells CREB Knock-out
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
|
none
|
Sample_geo_accession | GSM304495
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304495/suppl/GSM304495_77480-77460.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304496 | GPL570 |
|
K562 cells CREB Knock-out replicate 10
|
K562 cells CREB Knock-out
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days. The CREB specific shRNA sequences were selected and validated based on accepted parameters established by Tuschl et al.
|
none
|
Sample_geo_accession | GSM304496
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304496/suppl/GSM304496_77481-77461.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
GSM304498 | GPL570 |
|
K562 cells control replicate 4
|
K562 cells
|
K562 (Iscoves + 10% FCS) and TF-1 (RPMI + 10%FCS + rhGM-CSF. Cells were cultured at 37oC, 5% CO2 and split every 3 to 4 days.
|
None
|
Sample_geo_accession | GSM304498
| Sample_status | Public on Aug 30 2008
| Sample_submission_date | Jul 09 2008
| Sample_last_update_date | Jul 15 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_hyb_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_scan_protocol | RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133+ Array Set HG-U133A array.
| Sample_data_processing | MAS5.0
| Sample_platform_id | GPL570
| Sample_contact_name | matteo,,pellegrini
| Sample_contact_email | matteop@mcdb.ucla.edu
| Sample_contact_phone | 310 825-0012
| Sample_contact_institute | UCLA
| Sample_contact_address | 610 charles young drive east
| Sample_contact_city | los angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304498/suppl/GSM304498_77465-77445.CEL.gz
| Sample_series_id | GSE12056
| Sample_data_row_count | 54674
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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