Search results for the GEO ID: GSE12066  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM304678 | GPL1355 |
|
Alcohol-non-preferring-rep1
|
Alcohol-non-preferring
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304678
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304678/suppl/GSM304678.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304678/suppl/GSM304678.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304679 | GPL1355 |
|
Alcohol-non-preferring-rep2
|
Alcohol-non-preferring
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304679
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304679/suppl/GSM304679.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304679/suppl/GSM304679.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304680 | GPL1355 |
|
Alcohol-non-preferring-rep3
|
Alcohol-non-preferring
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304680
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304680/suppl/GSM304680.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304680/suppl/GSM304680.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304681 | GPL1355 |
|
Alcohol-non-preferring-rep4
|
Alcohol-non-preferring
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304681
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304681/suppl/GSM304681.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304681/suppl/GSM304681.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304682 | GPL1355 |
|
Alcohol-non-preferring-rep5
|
Alcohol-non-preferring
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304682
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304682/suppl/GSM304682.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304682/suppl/GSM304682.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304683 | GPL1355 |
|
Alcohol-preferring-rep1
|
Alcohol-preferring
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304683
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304683/suppl/GSM304683.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304683/suppl/GSM304683.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304684 | GPL1355 |
|
Alcohol-preferring-rep2
|
Alcohol-preferring
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304684
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304684/suppl/GSM304684.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304684/suppl/GSM304684.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304685 | GPL1355 |
|
Alcohol-preferring-rep3
|
Alcohol-preferring
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304685
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304685/suppl/GSM304685.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304685/suppl/GSM304685.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304686 | GPL1355 |
|
Alcohol-preferring-rep4
|
Alcohol-preferring
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304686
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304686/suppl/GSM304686.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304686/suppl/GSM304686.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304687 | GPL1355 |
|
Alcohol-preferring-rep5
|
Alcohol-preferring
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304687
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304687/suppl/GSM304687.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304687/suppl/GSM304687.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304688 | GPL1355 |
|
Congenic NP (NP.P)-rep1
|
Congenic NP (NP.P)
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304688
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304688/suppl/GSM304688.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304688/suppl/GSM304688.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304689 | GPL1355 |
|
Congenic NP (NP.P)-rep2
|
Congenic NP (NP.P)
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304689
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304689/suppl/GSM304689.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304689/suppl/GSM304689.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304690 | GPL1355 |
|
Congenic NP (NP.P)-rep3
|
Congenic NP (NP.P)
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304690
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304690/suppl/GSM304690.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304690/suppl/GSM304690.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304691 | GPL1355 |
|
Congenic NP (NP.P)-rep4
|
Congenic NP (NP.P)
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304691
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304691/suppl/GSM304691.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304691/suppl/GSM304691.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304692 | GPL1355 |
|
Congenic NP (NP.P)-rep5
|
Congenic NP (NP.P)
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304692
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304692/suppl/GSM304692.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304692/suppl/GSM304692.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304693 | GPL1355 |
|
Congenic P (P.NP)-rep1
|
Congenic P (P.NP)
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304693
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304693/suppl/GSM304693.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304693/suppl/GSM304693.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304694 | GPL1355 |
|
Congenic P (P.NP)-rep2
|
Congenic P (P.NP)
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304694
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304694/suppl/GSM304694.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304694/suppl/GSM304694.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304695 | GPL1355 |
|
Congenic P (P.NP)-rep3
|
Congenic P (P.NP)
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304695
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304695/suppl/GSM304695.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304695/suppl/GSM304695.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304696 | GPL1355 |
|
Congenic P (P.NP)-rep4
|
Congenic P (P.NP)
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304696
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304696/suppl/GSM304696.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304696/suppl/GSM304696.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
|
GSM304697 | GPL1355 |
|
Congenic P (P.NP)-rep5
|
Congenic P (P.NP)
|
Bone, Femur
|
Gene expression data from proximal femur
|
| Sample_geo_accession | GSM304697
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 10 2008
| | Sample_last_update_date | Jul 10 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Whole femora were harvested from 4-week-old NP, P, NP.P and P.NP animals. RNA was isolated from proximal femora using Trizol (Invtirogen, CA) and Rneasy Mini Kit (Qiagen Inc., CA) according to the manufacturer’s directions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Rat Genome 230 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the standard Affymetrix protocol.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Charles,H,Turner
| | Sample_contact_email | turnerch@iupui.edu
| | Sample_contact_phone | 317-274-3226
| | Sample_contact_fax | 317-274-3702
| | Sample_contact_department | Biomedical Engineering
| | Sample_contact_institute | Indiana University Purdue University Indiapanolis
| | Sample_contact_address | 723 W. Michigan St. SL 220C
| | Sample_contact_city | Indianapolis
| | Sample_contact_state | IN
| | Sample_contact_zip/postal_code | 46202
| | Sample_contact_country | USA
| | Sample_contact_web_link | http://engr.iupui.edu/bme/cturner.shtml
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304697/suppl/GSM304697.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304697/suppl/GSM304697.CHP.gz
| | Sample_series_id | GSE12066
| | Sample_data_row_count | 31099
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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