Search results for the GEO ID: GSE12078  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM304953 | GPL1261 |
|
ES LUC esiRNA day4 rep1
|
ES cells
|
Strain: Oct4-Gip
Passage: 25
|
lipofection mediated esiRNA knockdown
|
| Sample_geo_accession | GSM304953
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 11 2008
| | Sample_last_update_date | Jul 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the RNeasy Mini kit (Qiagen) and treated with DNase (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labeling and control reagent package (Affymetrix)
| | Sample_hyb_protocol | 15 µg fragmented cRNA was hybridised for 16 h at 45 °C to Mouse Genome 430 2.0 arrays which carry probes representing 45101 probe sets. Following hybridisation arrays were washed and stained with streptavidin-phycoerythrin in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | scanned using the Hewlett-Packard GeneChip Scanner 3000 7G.
| | Sample_data_processing | The image data were analysed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalisation method. After RMA normalisation (Irizarry et al., 2003) and outlier removement using the Nalimov test (p< 0.001) have been performed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Li,,Ding
| | Sample_contact_email | ding@mpi-cbg.de
| | Sample_contact_laboratory | Buchholz Lab
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304953/suppl/GSM304953.CEL.gz
| | Sample_series_id | GSE12078
| | Sample_data_row_count | 45101
| | |
|
GSM304954 | GPL1261 |
|
ES LUC esiRNA day4 rep2
|
ES cells
|
Strain: Oct4-Gip
Passage: 25
|
lipofection mediated esiRNA knockdown
|
| Sample_geo_accession | GSM304954
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 11 2008
| | Sample_last_update_date | Jul 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the RNeasy Mini kit (Qiagen) and treated with DNase (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labeling and control reagent package (Affymetrix)
| | Sample_hyb_protocol | 15 µg fragmented cRNA was hybridised for 16 h at 45 °C to Mouse Genome 430 2.0 arrays which carry probes representing 45101 probe sets. Following hybridisation arrays were washed and stained with streptavidin-phycoerythrin in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | scanned using the Hewlett-Packard GeneChip Scanner 3000 7G.
| | Sample_data_processing | The image data were analysed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalisation method. After RMA normalisation (Irizarry et al., 2003) and outlier removement using the Nalimov test (p< 0.001) have been performed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Li,,Ding
| | Sample_contact_email | ding@mpi-cbg.de
| | Sample_contact_laboratory | Buchholz Lab
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304954/suppl/GSM304954.CEL.gz
| | Sample_series_id | GSE12078
| | Sample_data_row_count | 45100
| | |
|
GSM304955 | GPL1261 |
|
ES LUC esiRNA day4 rep3
|
ES cells
|
Strain: Oct4-Gip
Passage: 25
|
lipofection mediated esiRNA knockdown
|
| Sample_geo_accession | GSM304955
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 11 2008
| | Sample_last_update_date | Jul 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the RNeasy Mini kit (Qiagen) and treated with DNase (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labeling and control reagent package (Affymetrix)
| | Sample_hyb_protocol | 15 µg fragmented cRNA was hybridised for 16 h at 45 °C to Mouse Genome 430 2.0 arrays which carry probes representing 45101 probe sets. Following hybridisation arrays were washed and stained with streptavidin-phycoerythrin in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | scanned using the Hewlett-Packard GeneChip Scanner 3000 7G.
| | Sample_data_processing | The image data were analysed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalisation method. After RMA normalisation (Irizarry et al., 2003) and outlier removement using the Nalimov test (p< 0.001) have been performed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Li,,Ding
| | Sample_contact_email | ding@mpi-cbg.de
| | Sample_contact_laboratory | Buchholz Lab
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304955/suppl/GSM304955.CEL.gz
| | Sample_series_id | GSE12078
| | Sample_data_row_count | 45101
| | |
|
GSM304957 | GPL1261 |
|
ES LUC esiRNA day4 rep4
|
ES cells
|
Strain: Oct4-Gip
Passage: 25
|
lipofection mediated esiRNA knockdown
|
| Sample_geo_accession | GSM304957
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 11 2008
| | Sample_last_update_date | Jul 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the RNeasy Mini kit (Qiagen) and treated with DNase (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labeling and control reagent package (Affymetrix)
| | Sample_hyb_protocol | 15 µg fragmented cRNA was hybridised for 16 h at 45 °C to Mouse Genome 430 2.0 arrays which carry probes representing 45101 probe sets. Following hybridisation arrays were washed and stained with streptavidin-phycoerythrin in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | scanned using the Hewlett-Packard GeneChip Scanner 3000 7G.
| | Sample_data_processing | The image data were analysed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalisation method. After RMA normalisation (Irizarry et al., 2003) and outlier removement using the Nalimov test (p< 0.001) have been performed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Li,,Ding
| | Sample_contact_email | ding@mpi-cbg.de
| | Sample_contact_laboratory | Buchholz Lab
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304957/suppl/GSM304957.CEL.gz
| | Sample_series_id | GSE12078
| | Sample_data_row_count | 45101
| | |
|
GSM304958 | GPL1261 |
|
ES Ctr9 esiRNA day4 rep1
|
ES cells
|
Strain: Oct4-Gip
Passage: 25
|
lipofection mediated esiRNA knockdown
|
| Sample_geo_accession | GSM304958
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 11 2008
| | Sample_last_update_date | Jul 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the RNeasy Mini kit (Qiagen) and treated with DNase (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labeling and control reagent package (Affymetrix)
| | Sample_hyb_protocol | 15 µg fragmented cRNA was hybridised for 16 h at 45 °C to Mouse Genome 430 2.0 arrays which carry probes representing 45101 probe sets. Following hybridisation arrays were washed and stained with streptavidin-phycoerythrin in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | scanned using the Hewlett-Packard GeneChip Scanner 3000 7G.
| | Sample_data_processing | The image data were analysed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalisation method. After RMA normalisation (Irizarry et al., 2003) and outlier removement using the Nalimov test (p< 0.001) have been performed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Li,,Ding
| | Sample_contact_email | ding@mpi-cbg.de
| | Sample_contact_laboratory | Buchholz Lab
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304958/suppl/GSM304958.CEL.gz
| | Sample_series_id | GSE12078
| | Sample_data_row_count | 45101
| | |
|
GSM304959 | GPL1261 |
|
ES Ctr9 esiRNA day4 rep2
|
ES cells
|
Strain: Oct4-Gip
Passage: 25
|
lipofection mediated esiRNA knockdown
|
| Sample_geo_accession | GSM304959
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 11 2008
| | Sample_last_update_date | Jul 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the RNeasy Mini kit (Qiagen) and treated with DNase (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labeling and control reagent package (Affymetrix)
| | Sample_hyb_protocol | 15 µg fragmented cRNA was hybridised for 16 h at 45 °C to Mouse Genome 430 2.0 arrays which carry probes representing 45101 probe sets. Following hybridisation arrays were washed and stained with streptavidin-phycoerythrin in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | scanned using the Hewlett-Packard GeneChip Scanner 3000 7G.
| | Sample_data_processing | The image data were analysed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalisation method. After RMA normalisation (Irizarry et al., 2003) and outlier removement using the Nalimov test (p< 0.001) have been performed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Li,,Ding
| | Sample_contact_email | ding@mpi-cbg.de
| | Sample_contact_laboratory | Buchholz Lab
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304959/suppl/GSM304959.CEL.gz
| | Sample_series_id | GSE12078
| | Sample_data_row_count | 45101
| | |
|
GSM304961 | GPL1261 |
|
ES Ctr9 esiRNA day4 rep3
|
ES cells
|
Strain: Oct4-Gip
Passage: 25
|
lipofection mediated esiRNA knockdown
|
| Sample_geo_accession | GSM304961
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 11 2008
| | Sample_last_update_date | Jul 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the RNeasy Mini kit (Qiagen) and treated with DNase (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labeling and control reagent package (Affymetrix)
| | Sample_hyb_protocol | 15 µg fragmented cRNA was hybridised for 16 h at 45 °C to Mouse Genome 430 2.0 arrays which carry probes representing 45101 probe sets. Following hybridisation arrays were washed and stained with streptavidin-phycoerythrin in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | scanned using the Hewlett-Packard GeneChip Scanner 3000 7G.
| | Sample_data_processing | The image data were analysed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalisation method. After RMA normalisation (Irizarry et al., 2003) and outlier removement using the Nalimov test (p< 0.001) have been performed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Li,,Ding
| | Sample_contact_email | ding@mpi-cbg.de
| | Sample_contact_laboratory | Buchholz Lab
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304961/suppl/GSM304961.CEL.gz
| | Sample_series_id | GSE12078
| | Sample_data_row_count | 45101
| | |
|
GSM304962 | GPL1261 |
|
ES Ctr9 esiRNA day4 rep4
|
ES cells
|
Strain: Oct4-Gip
Passage: 25
|
lipofection mediated esiRNA knockdown
|
| Sample_geo_accession | GSM304962
| | Sample_status | Public on Jul 18 2008
| | Sample_submission_date | Jul 11 2008
| | Sample_last_update_date | Jul 17 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated by using the RNeasy Mini kit (Qiagen) and treated with DNase (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | One-cycle target labeling and control reagent package (Affymetrix)
| | Sample_hyb_protocol | 15 µg fragmented cRNA was hybridised for 16 h at 45 °C to Mouse Genome 430 2.0 arrays which carry probes representing 45101 probe sets. Following hybridisation arrays were washed and stained with streptavidin-phycoerythrin in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | scanned using the Hewlett-Packard GeneChip Scanner 3000 7G.
| | Sample_data_processing | The image data were analysed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalisation method. After RMA normalisation (Irizarry et al., 2003) and outlier removement using the Nalimov test (p< 0.001) have been performed.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Li,,Ding
| | Sample_contact_email | ding@mpi-cbg.de
| | Sample_contact_laboratory | Buchholz Lab
| | Sample_contact_institute | MPI-CBG
| | Sample_contact_address | Pfotenhauerstr. 108
| | Sample_contact_city | Dresden
| | Sample_contact_zip/postal_code | 01307
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM304nnn/GSM304962/suppl/GSM304962.CEL.gz
| | Sample_series_id | GSE12078
| | Sample_data_row_count | 45101
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