Search results for the GEO ID: GSE12102  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM305352 | GPL570 |
|
EWS primary tumor relapse (R194)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305352
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305352/suppl/GSM305352.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305353 | GPL570 |
|
EWS primary tumor relapse (R29)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305353
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305353/suppl/GSM305353.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305354 | GPL570 |
|
EWS primary tumor no evidence of disease (R30)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305354
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305354/suppl/GSM305354.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305355 | GPL570 |
|
EWS primary tumor relapse (R33)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305355
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305355/suppl/GSM305355.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305356 | GPL570 |
|
EWS primary tumor no evidence of disease (R34)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305356
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305356/suppl/GSM305356.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305357 | GPL570 |
|
EWS primary tumor relapse (R35)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305357
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305357/suppl/GSM305357.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305358 | GPL570 |
|
EWS primary tumor relapse (R37)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305358
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305358/suppl/GSM305358.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305359 | GPL570 |
|
EWS primary tumor relapse (R38)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305359
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305359/suppl/GSM305359.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305360 | GPL570 |
|
EWS primary tumor relapse (R39)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305360
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305360/suppl/GSM305360.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305361 | GPL570 |
|
EWS primary tumor relapse (R40)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305361
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305361/suppl/GSM305361.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305362 | GPL570 |
|
EWS primary tumor no evidence of disease (R41)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305362
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305362/suppl/GSM305362.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305363 | GPL570 |
|
EWS primary tumor no evidence of disease (R42)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305363
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305363/suppl/GSM305363.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305364 | GPL570 |
|
EWS primary tumor relapse (R46)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305364
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305364/suppl/GSM305364.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305365 | GPL570 |
|
EWS metastasis tumor metastasis (R48)
|
EWS human sample
|
EWS metastasis tumor (MET - metastasis)
|
Gene expression data from EWS metastasis tumor
|
| Sample_geo_accession | GSM305365
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305365/suppl/GSM305365.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305366 | GPL570 |
|
EWS metastasis tumor metastasis (R49)
|
EWS human sample
|
EWS metastasis tumor (MET - metastasis)
|
Gene expression data from EWS metastasis tumor
|
| Sample_geo_accession | GSM305366
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305366/suppl/GSM305366.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305367 | GPL570 |
|
EWS metastasis tumor metastasis (R50)
|
EWS human sample
|
EWS metastasis tumor (MET - metastasis)
|
Gene expression data from EWS metastasis tumor
|
| Sample_geo_accession | GSM305367
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305367/suppl/GSM305367.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305368 | GPL570 |
|
EWS primary tumor relapse (R51)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305368
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305368/suppl/GSM305368.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305369 | GPL570 |
|
EWS primary tumor no evidence of disease (R53)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305369
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305369/suppl/GSM305369.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305370 | GPL570 |
|
EWS metastasis tumor metastasis (R55)
|
EWS human sample
|
EWS metastasis tumor (MET - metastasis)
|
Gene expression data from EWS metastasis tumor
|
| Sample_geo_accession | GSM305370
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305370/suppl/GSM305370.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305371 | GPL570 |
|
EWS primary tumor relapse (R57)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305371
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305371/suppl/GSM305371.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305372 | GPL570 |
|
EWS primary tumor relapse (R58)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305372
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305372/suppl/GSM305372.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305373 | GPL570 |
|
EWS primary tumor no evidence of disease (R60)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305373
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305373/suppl/GSM305373.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305374 | GPL570 |
|
EWS primary tumor no evidence of disease (R61)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305374
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305374/suppl/GSM305374.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305375 | GPL570 |
|
EWS primary tumor no evidence of disease (R62)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305375
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305375/suppl/GSM305375.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305376 | GPL570 |
|
EWS primary tumor no evidence of disease (R63)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305376
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305376/suppl/GSM305376.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305377 | GPL570 |
|
EWS primary tumor relapse (R64)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305377
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305377/suppl/GSM305377.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305378 | GPL570 |
|
EWS primary tumor relapse (R65)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305378
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305378/suppl/GSM305378.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305379 | GPL570 |
|
EWS primary tumor relapse (R67)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305379
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305379/suppl/GSM305379.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305380 | GPL570 |
|
EWS primary tumor no evidence of disease (R69)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305380
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305380/suppl/GSM305380.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305381 | GPL570 |
|
EWS primary tumor relapse (R72)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305381
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305381/suppl/GSM305381.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305382 | GPL570 |
|
EWS primary tumor no evidence of disease (R74)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305382
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305382/suppl/GSM305382.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305383 | GPL570 |
|
EWS primary tumor no evidence of disease (R78)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305383
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305383/suppl/GSM305383.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305384 | GPL570 |
|
EWS primary tumor no evidence of disease (R79)
|
EWS human sample
|
EWS primary tumor (NED -no evidence of disease)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305384
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305384/suppl/GSM305384.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305385 | GPL570 |
|
EWS primary tumor relapse (R80)
|
EWS human sample
|
EWS primary tumor (REL - relapse)
|
Gene expression data from EWS primary tumor
|
| Sample_geo_accession | GSM305385
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305385/suppl/GSM305385.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305386 | GPL570 |
|
EWS metastasis tumor metastasis (R81)
|
EWS human sample
|
EWS metastasis tumor (MET - metastasis)
|
Gene expression data from EWS metastasis tumor
|
| Sample_geo_accession | GSM305386
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305386/suppl/GSM305386.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305387 | GPL570 |
|
EWS metastasis tumor metastasis (R83)
|
EWS human sample
|
EWS metastasis tumor (MET - metastasis)
|
Gene expression data from EWS metastasis tumor
|
| Sample_geo_accession | GSM305387
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305387/suppl/GSM305387.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
| | |
|
GSM305388 | GPL570 |
|
EWS metastasis tumor metastasis (R84)
|
EWS human sample
|
EWS metastasis tumor (MET - metastasis)
|
Gene expression data from EWS metastasis tumor
|
| Sample_geo_accession | GSM305388
| | Sample_status | Public on Jul 15 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Jul 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix One-Cycle protocol from 5 ug total RNA (GeneChip® Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000, Affymetrix.
| | Sample_data_processing | Single samples were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. Data were then rescaled within each array and between arrays through an affine transformation (Bengtsson and Hossjer 2006).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Remondini
| | Sample_contact_email | daniel.remondini@unibo.it
| | Sample_contact_institute | Dip. di Fisica, Bologna University
| | Sample_contact_address | Viale Berti Pichat 6/2
| | Sample_contact_city | Bologna
| | Sample_contact_zip/postal_code | 40127
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305388/suppl/GSM305388.CEL.gz
| | Sample_series_id | GSE12102
| | Sample_data_row_count | 54675
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Make groups for comparisons |
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| Select GSMs and click on "Add groups" |
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