Search results for the GEO ID: GSE12108  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM305429 | GPL570 |
|
F. novicida infected D1_FN
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305429
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305429/suppl/GSM305429.CEL.gz
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305430 | GPL570 |
|
Uninfected D1_UT
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305430
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305430/suppl/GSM305430.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305431 | GPL570 |
|
F. novicida infected D2_FN
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305431
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 04 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305431/suppl/GSM305431.CEL.gz
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305432 | GPL570 |
|
Uninfected D2_UT
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305432
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305432/suppl/GSM305432.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305433 | GPL570 |
|
F. novicida infected D3_FN
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305433
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305433/suppl/GSM305433.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305434 | GPL570 |
|
Uninfected D3_UT
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305434
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305434/suppl/GSM305434.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305435 | GPL570 |
|
F. novicida infected D4_FN
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305435
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305435/suppl/GSM305435.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305436 | GPL570 |
|
Uninfected D4_UT
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305436
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305436/suppl/GSM305436.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305437 | GPL570 |
|
Schu S4 infected D5_S4
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305437
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305437/suppl/GSM305437.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305438 | GPL570 |
|
Uninfected D5_UT
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305438
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305438/suppl/GSM305438.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305439 | GPL570 |
|
Schu S4 infected D6_S4
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305439
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305439/suppl/GSM305439.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305440 | GPL570 |
|
Uninfected D6_UT
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305440
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305440/suppl/GSM305440.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305441 | GPL570 |
|
Schu S4 infected D7_S4
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305441
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305441/suppl/GSM305441.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
| | |
|
GSM305442 | GPL570 |
|
Schu S4 infected D8_S4
|
peripheral blood monocytes
|
healthy adult
|
none
|
| Sample_geo_accession | GSM305442
| | Sample_status | Public on Aug 13 2008
| | Sample_submission_date | Jul 14 2008
| | Sample_last_update_date | Aug 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 100 MOI of F. novicida or Schu S4 for 24 hours
| | Sample_growth_protocol_ch1 | RPMI-1640 with 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard
| | Sample_hyb_protocol | Affymetrix standard
| | Sample_scan_protocol | Affymetrix standard
| | Sample_data_processing | R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jonathan,P,Butchar
| | Sample_contact_email | jon.butchar@osumc.edu
| | Sample_contact_phone | 614-292-4611
| | Sample_contact_laboratory | Tridandapani
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | The Ohio State University
| | Sample_contact_address | 473 W. 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM305nnn/GSM305442/suppl/GSM305442.CEL.gz
| | Sample_relation | Reanalyzed by: GSE49910
| | Sample_series_id | GSE12108
| | Sample_data_row_count | 54675
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