Search results for the GEO ID: GSE12161  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM306132 | GPL570 |
|
Control_HepG2_Rep1
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Human Hepatocarcinoma cells (HepG2)
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HepG2 (ATCC Number: HB-8065) is an adherent hepatocellular carcinoma cell line.
Organism: Homo sapiens
Source: Organ: liver
|
Gene expression profile of normal HepG2 cells (control)
|
| Sample_geo_accession | GSM306132
| | Sample_status | Public on Mar 04 2010
| | Sample_submission_date | Jul 18 2008
| | Sample_last_update_date | Mar 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HepG2 cells were grown to confluency and total RNA was isolated using Trizol (Invitrogen, CA, USA) according to the manufacturers instructions. The RNA so obtained was purified using the RNeasy Mini-kit (Qiagen, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 6 microg total RNA using the GeneChip Expression IVT Labelling kit from Affymetrix (USA) according to the manufacturers instructions.
| | Sample_hyb_protocol | The labelled cRNA obtained was fragmented and 15 microg of cRNA were hybridized to the Affymetrix HG-U133 plus 2.0 chip according to the protocols described by the manufacturer.
| | Sample_scan_protocol | The genechips were washed thoroughly after hybridisation and scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data was normalised with MAS 5.0 using the GCOS Software from Affymetrix using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Malabika,,Datta
| | Sample_contact_email | mdatta@igib.res.in
| | Sample_contact_institute | Institute of Genomics and Integrative Biology
| | Sample_contact_address | Mall Road
| | Sample_contact_city | Delhi
| | Sample_contact_zip/postal_code | 110 007
| | Sample_contact_country | India
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM306nnn/GSM306132/suppl/GSM306132.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM306nnn/GSM306132/suppl/GSM306132.CHP.gz
| | Sample_series_id | GSE12161
| | Sample_data_row_count | 54675
| | |
|
GSM306133 | GPL570 |
|
Control_HepG2_rep2
|
Human Hepatocellular Carcinoma (HepG2)
|
HepG2 (ATCC Number: HB-8065) is an adherent hepatocellular carcinoma cell line.
Organism: Homo sapiens
Source: Organ: liver
|
Gene expression profile of normal HepG2 cells (control)
|
| Sample_geo_accession | GSM306133
| | Sample_status | Public on Mar 04 2010
| | Sample_submission_date | Jul 18 2008
| | Sample_last_update_date | Mar 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HepG2 cells were grown to confluency and total RNA was isolated using Trizol (Invitrogen, CA, USA) according to the manufacturers instructions. The RNA so obtained was purified using the RNeasy Mini-kit (Qiagen, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 6 microg total RNA using the GeneChip Expression IVT Labelling kit from Affymetrix (USA) according to the manufacturers instructions.
| | Sample_hyb_protocol | The labelled cRNA obtained was fragmented and 15 microg of cRNA were hybridized to the Affymetrix HG-U133 plus 2.0 chip according to the protocols described by the manufacturer.
| | Sample_scan_protocol | The genechips were washed thoroughly after hybridisation and scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data was normalised with MAS 5.0 using the GCOS Software from Affymetrix using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Malabika,,Datta
| | Sample_contact_email | mdatta@igib.res.in
| | Sample_contact_institute | Institute of Genomics and Integrative Biology
| | Sample_contact_address | Mall Road
| | Sample_contact_city | Delhi
| | Sample_contact_zip/postal_code | 110 007
| | Sample_contact_country | India
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM306nnn/GSM306133/suppl/GSM306133.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM306nnn/GSM306133/suppl/GSM306133.CHP.gz
| | Sample_series_id | GSE12161
| | Sample_data_row_count | 54675
| | |
|
GSM306134 | GPL570 |
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Treated_HepG2_rep1
|
Human Hepatocellular Carcinoma (HepG2)
|
HepG2 (ATCC Number: HB-8065) is an adherent hepatocellular carcinoma cell line.
Organism: Homo sapiens
Source: Organ: liver
|
Gene expression profile of HepG2 cells treated with TNF alpha (0.5nM, 12h)
|
| Sample_geo_accession | GSM306134
| | Sample_status | Public on Mar 04 2010
| | Sample_submission_date | Jul 18 2008
| | Sample_last_update_date | Mar 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HepG2 cells were grown to confluency and total RNA was isolated using Trizol (Invitrogen, CA, USA) according to the manufacturers instructions. The RNA so obtained was purified using the RNeasy Mini-kit (Qiagen, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 6 microg total RNA using the GeneChip Expression IVT Labelling kit from Affymetrix (USA) according to the manufacturers instructions.
| | Sample_hyb_protocol | The labelled cRNA obtained was fragmented and 15 microg of cRNA were hybridized to the Affymetrix HG-U133 plus 2.0 chip according to the protocols described by the manufacturer.
| | Sample_scan_protocol | The genechips were washed thoroughly after hybridisation and scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data was normalised with MAS 5.0 using the GCOS Software from Affymetrix using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Malabika,,Datta
| | Sample_contact_email | mdatta@igib.res.in
| | Sample_contact_institute | Institute of Genomics and Integrative Biology
| | Sample_contact_address | Mall Road
| | Sample_contact_city | Delhi
| | Sample_contact_zip/postal_code | 110 007
| | Sample_contact_country | India
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM306nnn/GSM306134/suppl/GSM306134.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM306nnn/GSM306134/suppl/GSM306134.CHP.gz
| | Sample_series_id | GSE12161
| | Sample_data_row_count | 54675
| | |
|
GSM306135 | GPL570 |
|
Treated_HepG2_rep2
|
Human Hepatocellular Carcinoma (HepG2)
|
HepG2 (ATCC Number: HB-8065) is an adherent hepatocellular carcinoma cell line.
Organism: Homo sapiens
Source: Organ: liver
|
Gene expression profile of HepG2 cells treated with TNF alpha (0.5nM, 12h)
|
| Sample_geo_accession | GSM306135
| | Sample_status | Public on Mar 04 2010
| | Sample_submission_date | Jul 18 2008
| | Sample_last_update_date | Mar 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HepG2 cells were grown to confluency and total RNA was isolated using Trizol (Invitrogen, CA, USA) according to the manufacturers instructions. The RNA so obtained was purified using the RNeasy Mini-kit (Qiagen, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 6 microg total RNA using the GeneChip Expression IVT Labelling kit from Affymetrix (USA) according to the manufacturers instructions.
| | Sample_hyb_protocol | The labelled cRNA obtained was fragmented and 15 microg of cRNA were hybridized to the Affymetrix HG-U133 plus 2.0 chip according to the protocols described by the manufacturer.
| | Sample_scan_protocol | The genechips were washed thoroughly after hybridisation and scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data was normalised with MAS 5.0 using the GCOS Software from Affymetrix using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Malabika,,Datta
| | Sample_contact_email | mdatta@igib.res.in
| | Sample_contact_institute | Institute of Genomics and Integrative Biology
| | Sample_contact_address | Mall Road
| | Sample_contact_city | Delhi
| | Sample_contact_zip/postal_code | 110 007
| | Sample_contact_country | India
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM306nnn/GSM306135/suppl/GSM306135.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM306nnn/GSM306135/suppl/GSM306135.CHP.gz
| | Sample_series_id | GSE12161
| | Sample_data_row_count | 54675
| | |
|
GSM347145 | GPL570 |
|
Control_HepG2_rep3
|
Human Hepatocellular Carcinoma (HepG2)
|
HepG2 (ATCC Number: HB-8065) is an adherent hepatocellular carcinoma cell line.
Organism: Homo sapiens
Source: Organ: liver
|
Gene expression profile of normal HepG2 cells (control)
|
| Sample_geo_accession | GSM347145
| | Sample_status | Public on Mar 04 2010
| | Sample_submission_date | Dec 03 2008
| | Sample_last_update_date | Mar 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HepG2 cells were grown to confluency and total RNA was isolated using Trizol (Invitrogen, CA, USA) according to the manufacturers instructions. The RNA so obtained was purified using the RNeasy Mini-kit (Qiagen, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 6 microg total RNA using the GeneChip Expression IVT Labelling kit from Affymetrix (USA) according to the manufacturers instructions.
| | Sample_hyb_protocol | The labelled cRNA obtained was fragmented and 15 microg of cRNA were hybridized to the Affymetrix HG-U133 plus 2.0 chip according to the protocols described by the manufacturer.
| | Sample_scan_protocol | The genechips were washed thoroughly after hybridisation and scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data was normalised with MAS 5.0 using the GCOS Software from Affymetrix using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Malabika,,Datta
| | Sample_contact_email | mdatta@igib.res.in
| | Sample_contact_institute | Institute of Genomics and Integrative Biology
| | Sample_contact_address | Mall Road
| | Sample_contact_city | Delhi
| | Sample_contact_zip/postal_code | 110 007
| | Sample_contact_country | India
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347145/suppl/GSM347145.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347145/suppl/GSM347145.CHP.gz
| | Sample_series_id | GSE12161
| | Sample_data_row_count | 54675
| | |
|
GSM347146 | GPL570 |
|
Treated_HepG2_rep3
|
Human Hepatocellular Carcinoma (HepG2)
|
HepG2 (ATCC Number: HB-8065) is an adherent hepatocellular carcinoma cell line.
Organism: Homo sapiens
Source: Organ: liver
|
Gene expression profile of HepG2 cells treated with TNF alpha (0.5nM, 12h)
|
| Sample_geo_accession | GSM347146
| | Sample_status | Public on Mar 04 2010
| | Sample_submission_date | Dec 03 2008
| | Sample_last_update_date | Mar 04 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | HepG2 cells were grown to confluency and total RNA was isolated using Trizol (Invitrogen, CA, USA) according to the manufacturers instructions. The RNA so obtained was purified using the RNeasy Mini-kit (Qiagen, Germany)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared from 6 microg total RNA using the GeneChip Expression IVT Labelling kit from Affymetrix (USA) according to the manufacturers instructions.
| | Sample_hyb_protocol | The labelled cRNA obtained was fragmented and 15 microg of cRNA were hybridized to the Affymetrix HG-U133 plus 2.0 chip according to the protocols described by the manufacturer.
| | Sample_scan_protocol | The genechips were washed thoroughly after hybridisation and scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data was normalised with MAS 5.0 using the GCOS Software from Affymetrix using default settings. The normalization target was set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Malabika,,Datta
| | Sample_contact_email | mdatta@igib.res.in
| | Sample_contact_institute | Institute of Genomics and Integrative Biology
| | Sample_contact_address | Mall Road
| | Sample_contact_city | Delhi
| | Sample_contact_zip/postal_code | 110 007
| | Sample_contact_country | India
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347146/suppl/GSM347146.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM347nnn/GSM347146/suppl/GSM347146.CHP.gz
| | Sample_series_id | GSE12161
| | Sample_data_row_count | 54675
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