Search results for the GEO ID: GSE12227  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM307428 | GPL339 |
|
neonatal cortex, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep1, 430A
|
neonatal cortex, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep1
|
Genotype: T9H/+ heterozygotes
|
expression data from neonatal cortex (forebrain)
|
| Sample_geo_accession | GSM307428
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307428/suppl/GSM307428.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307428/suppl/GSM307428.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307429 | GPL339 |
|
neonatal cortex, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep2, 430A
|
neonatal cortex, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep2
|
Genotype: T9H/+ heterozygotes
|
expression data from neonatal cortex (forebrain)
|
| Sample_geo_accession | GSM307429
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307429/suppl/GSM307429.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307429/suppl/GSM307429.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307430 | GPL339 |
|
neonatal cortex, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep1, 430A
|
neonatal cortex, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep1
|
Genotype: T9H/+ heterozygotes
|
expression data from neonatal cortex (forebrain)
|
| Sample_geo_accession | GSM307430
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307430/suppl/GSM307430.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307430/suppl/GSM307430.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307431 | GPL339 |
|
neonatal cortex, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep2, 430A
|
neonatal cortex, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep2
|
Genotype: T9H/+ heterozygotes
|
expression data from neonatal cortex (forebrain)
|
| Sample_geo_accession | GSM307431
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307431/suppl/GSM307431.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307431/suppl/GSM307431.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307432 | GPL339 |
|
neonatal cerebellum, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep1, 430A
|
neonatal cerebellum, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep1
|
Genotype: T9H/+ heterozygotes
|
expression data from neonatal cerebellum
|
| Sample_geo_accession | GSM307432
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307432/suppl/GSM307432.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307432/suppl/GSM307432.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307433 | GPL339 |
|
neonatal cerebellum, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep2, 430A
|
neonatal cerebellum, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep2
|
Genotype: T9H/+ heterozygotes
|
expression data from neonatal cerebellum
|
| Sample_geo_accession | GSM307433
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307433/suppl/GSM307433.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307433/suppl/GSM307433.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307434 | GPL339 |
|
neonatal cerebellum, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep1, 430A
|
neonatal cerebellum, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep1
|
Genotype: T9H/+ heterozygotes
|
expression data from neonatal cerebellum
|
| Sample_geo_accession | GSM307434
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307434/suppl/GSM307434.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307434/suppl/GSM307434.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307435 | GPL339 |
|
neonatal cerebellum, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep2, 430A
|
neonatal cerebellum, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep2
|
Genotype: T9H/+ heterozygotes
|
expression data from neonatal cerebellum
|
| Sample_geo_accession | GSM307435
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307435/suppl/GSM307435.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307435/suppl/GSM307435.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307436 | GPL339 |
|
mouse brain from 15.5 dpc embryo, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep1, 430A
|
mouse brain from 15.5 dpc embryo, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep1
|
Genotype: T9H/+ heterozygotes
|
expression data from 15.5 dpc embryonic brain
|
| Sample_geo_accession | GSM307436
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307436/suppl/GSM307436.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307436/suppl/GSM307436.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307437 | GPL339 |
|
mouse brain from 15.5 dpc embryo, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep2, 430A
|
mouse brain from 15.5 dpc embryo, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, biological rep2
|
Genotype: T9H/+ heterozygotes
|
expression data from 15.5 dpc embryonic brain
|
| Sample_geo_accession | GSM307437
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307437/suppl/GSM307437.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307437/suppl/GSM307437.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307438 | GPL339 |
|
mouse brain from 15.5 dpc embryo, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep1, 430A
|
mouse brain from 15.5 dpc embryo, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep1
|
Genotype: T9H/+ heterozygotes
|
expression data from 15.5 dpc embryonic brain
|
| Sample_geo_accession | GSM307438
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307438/suppl/GSM307438.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307438/suppl/GSM307438.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307439 | GPL339 |
|
mouse brain from 15.5 dpc embryo, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep2, 430A
|
mouse brain from 15.5 dpc embryo, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, biological rep2
|
Genotype: T9H/+ heterozygotes
|
expression data from 15.5 dpc embryonic brain
|
| Sample_geo_accession | GSM307439
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307439/suppl/GSM307439.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307439/suppl/GSM307439.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307440 | GPL339 |
|
mouse brain from 13.5 dpc embryo, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15, 430A
|
mouse brain from 13.5 dpc embryo, T9H/+ matdup proximal Chr 7, patdup proximal Chr 15
|
Genotype: T9H/+ heterozygotes
|
expression data from 13.5 dpc embryonic brain
|
| Sample_geo_accession | GSM307440
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307440/suppl/GSM307440.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307440/suppl/GSM307440.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
GSM307441 | GPL339 |
|
mouse brain from 13.5 dpc embryo, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15, 430A
|
mouse brain from 13.5 dpc embryo, T9H/+ patdup proximal Chr 7, matdup proximal Chr 15
|
Genotype: T9H/+ heterozygotes
|
expression data from 13.5 dpc embryonic brain
|
| Sample_geo_accession | GSM307441
| | Sample_status | Public on Jul 25 2008
| | Sample_submission_date | Jul 24 2008
| | Sample_last_update_date | Jul 24 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Neonatal mice and embryos were bred and identified as described (Buettner, VL, et al., Mammalian Genome, volume 16, 219-227 (2005).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was prepared by use of Trizol followed by the RNeasy Mini Kit as described in the manufacturers' instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Labeling, hybridization, scanning and data processing were performed at the UC Irvine DNA and Protein Microarray Facility. Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 9 µg total RNA (GeneChipR Expression Analysis Technical Manual, 2001, Affymetrix, Inc., Santa Clara, CA).
| | Sample_hyb_protocol | Following fragmentation, 10 micrograms of fragmented target cRNA was hybridized for 16 hr at 45° C on GeneChipR Mouse Expression Array 430A. Genechips were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling with a target intensity value of 2500 as the normalization method.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Xiwei,,Wu
| | Sample_contact_email | xwu@coh.org
| | Sample_contact_department | Biomedical Informatics
| | Sample_contact_institute | City of Hope National Medical Center
| | Sample_contact_address | 1500 E. Duarte Rd.
| | Sample_contact_city | Duarte
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 91010
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307441/suppl/GSM307441.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307441/suppl/GSM307441.CHP.gz
| | Sample_series_id | GSE12227
| | Sample_series_id | GSE12231
| | Sample_data_row_count | 22690
| | |
|
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