Search results for the GEO ID: GSE12251  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM307886 | GPL570 |
|
P2/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307886
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307886/suppl/GSM307886.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307887 | GPL570 |
|
P3/5mg/kg/W0
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307887
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307887/suppl/GSM307887.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307888 | GPL570 |
|
P5/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307888
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307888/suppl/GSM307888.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307889 | GPL570 |
|
P9/5mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307889
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307889/suppl/GSM307889.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307890 | GPL570 |
|
P10/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307890
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307890/suppl/GSM307890.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307891 | GPL570 |
|
P12/5mg/kg/W0
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307891
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307891/suppl/GSM307891.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307892 | GPL570 |
|
P13/5mg/kg/W0 P111632
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307892
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307892/suppl/GSM307892.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307893 | GPL570 |
|
P13/5mg/kg/W0 P111633
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307893
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307893/suppl/GSM307893.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307894 | GPL570 |
|
P14/5mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307894
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307894/suppl/GSM307894.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307895 | GPL570 |
|
P15/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307895
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307895/suppl/GSM307895.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307896 | GPL570 |
|
P16/5mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307896
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307896/suppl/GSM307896.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307898 | GPL570 |
|
P19/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307898
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307898/suppl/GSM307898.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307899 | GPL570 |
|
P24/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307899
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307899/suppl/GSM307899.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307900 | GPL570 |
|
P27/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307900
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307900/suppl/GSM307900.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307901 | GPL570 |
|
P28/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307901
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307901/suppl/GSM307901.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307902 | GPL570 |
|
P29/5mg/kg/W0
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307902
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307902/suppl/GSM307902.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307903 | GPL570 |
|
P32/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307903
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307903/suppl/GSM307903.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307904 | GPL570 |
|
P33/5mg/kg/W0
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307904
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307904/suppl/GSM307904.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307905 | GPL570 |
|
P34/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307905
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307905/suppl/GSM307905.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307906 | GPL570 |
|
P36/10mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307906
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307906/suppl/GSM307906.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307907 | GPL570 |
|
P45/5mg/kg/W0
|
colonic biopsy; WK8RSPHM: Yes
|
WK8RSPHM: Yes
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307907
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307907/suppl/GSM307907.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
GSM307908 | GPL570 |
|
P47/5mg/kg/W0
|
colonic biopsy; WK8RSPHM: No
|
WK8RSPHM: No
|
Response to infliximab was defined as endoscopic and histologic healing at week 8
|
| Sample_geo_accession | GSM307908
| | Sample_status | Public on Aug 25 2009
| | Sample_submission_date | Jul 25 2008
| | Sample_last_update_date | Aug 25 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen's RNeasy mini kit according to the manufacturer’s instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 11 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GCOS 1.4 (GeneChip Operating System) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| | Sample_platform_id | GPL570
| | Sample_contact_name | K,,Li
| | Sample_contact_email | kli@cntus.jnj.com
| | Sample_contact_institute | Centocor
| | Sample_contact_address | 145 King of Prussia
| | Sample_contact_city | Radnor
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19086
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM307nnn/GSM307908/suppl/GSM307908.CEL.gz
| | Sample_series_id | GSE12251
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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