Search results for the GEO ID: GSE12275  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM308249 | GPL1261 |
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FAN +/+, untreated
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FAN +/+, untreated
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Genotype: wild type C57BL/6 MEFs
Treatment: untreated
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Gene expression data from embryos younger than nuclear cycle 9, i.e. before zygotic genome activation.
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| Sample_geo_accession | GSM308249
| | Sample_status | Public on Aug 31 2009
| | Sample_submission_date | Jul 29 2008
| | Sample_last_update_date | Aug 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Untreated cells were incubated in DMEM 0% FCS for 24h and treated cells were incubated in DMEM 0% FCS for 8h followed by a 16h TNF (50ng/ml) treatment.
| | Sample_growth_protocol_ch1 | MEFs were prepared from C57BL/6 embryos with either FAN +/+ or FAN -/- genotypes and grown in DMEM 0% FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNeasy MidiKit following manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_hyb_protocol | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_scan_protocol | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0. Processed by AROS applied biotechnology (Sweden)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | bruno,,Ségui
| | Sample_contact_institute | INSERM U858
| | Sample_contact_address | Av Jean Poulhes
| | Sample_contact_city | Toulouse
| | Sample_contact_state | BP84225
| | Sample_contact_zip/postal_code | 31432
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308249/suppl/GSM308249.CEL.gz
| | Sample_series_id | GSE12275
| | Sample_data_row_count | 45101
| | |
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GSM308250 | GPL1261 |
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FAN +/+, TNF treated
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FAN +/+, TNF treated
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Genotype: FAN -/- C57BL/6 MEFs
Treatment: 16h TNF treatement (50ng/ml)
|
Gene expression data from embryos younger than nuclear cycle 9, i.e. before zygotic genome activation.
|
| Sample_geo_accession | GSM308250
| | Sample_status | Public on Aug 31 2009
| | Sample_submission_date | Jul 29 2008
| | Sample_last_update_date | Aug 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Untreated cells were incubated in DMEM 0% FCS for 24h and treated cells were incubated in DMEM 0% FCS for 8h followed by a 16h TNF (50ng/ml) treatment.
| | Sample_growth_protocol_ch1 | MEFs were prepared from C57BL/6 embryos with either FAN +/+ or FAN -/- genotypes and grown in DMEM 0% FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNeasy MidiKit following manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_hyb_protocol | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_scan_protocol | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0. Processed by AROS applied biotechnology (Sweden)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | bruno,,Ségui
| | Sample_contact_institute | INSERM U858
| | Sample_contact_address | Av Jean Poulhes
| | Sample_contact_city | Toulouse
| | Sample_contact_state | BP84225
| | Sample_contact_zip/postal_code | 31432
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308250/suppl/GSM308250.CEL.gz
| | Sample_series_id | GSE12275
| | Sample_data_row_count | 45101
| | |
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GSM308251 | GPL1261 |
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FAN -/-, untreated
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FAN -/-, untreated
|
Genotype: wild type C57BL/6 MEFs
Treatment: untreated
|
Gene expression data from embryos in slow phase of cellularisation.
|
| Sample_geo_accession | GSM308251
| | Sample_status | Public on Aug 31 2009
| | Sample_submission_date | Jul 29 2008
| | Sample_last_update_date | Aug 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Untreated cells were incubated in DMEM 0% FCS for 24h and treated cells were incubated in DMEM 0% FCS for 8h followed by a 16h TNF (50ng/ml) treatment.
| | Sample_growth_protocol_ch1 | MEFs were prepared from C57BL/6 embryos with either FAN +/+ or FAN -/- genotypes and grown in DMEM 0% FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNeasy MidiKit following manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_hyb_protocol | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_scan_protocol | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0. Processed by AROS applied biotechnology (Sweden)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | bruno,,Ségui
| | Sample_contact_institute | INSERM U858
| | Sample_contact_address | Av Jean Poulhes
| | Sample_contact_city | Toulouse
| | Sample_contact_state | BP84225
| | Sample_contact_zip/postal_code | 31432
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308251/suppl/GSM308251.CEL.gz
| | Sample_series_id | GSE12275
| | Sample_data_row_count | 45101
| | |
|
GSM308252 | GPL1261 |
|
FAN -/-, TNF treated
|
FAN -/-, TNF treated
|
Genotype: FAN -/- C57BL/6 MEFs
Treatment: 16h TNF treatement (50ng/ml)
|
Gene expression data from embryos in slow phase of cellularisation.
|
| Sample_geo_accession | GSM308252
| | Sample_status | Public on Aug 31 2009
| | Sample_submission_date | Jul 29 2008
| | Sample_last_update_date | Aug 31 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Untreated cells were incubated in DMEM 0% FCS for 24h and treated cells were incubated in DMEM 0% FCS for 8h followed by a 16h TNF (50ng/ml) treatment.
| | Sample_growth_protocol_ch1 | MEFs were prepared from C57BL/6 embryos with either FAN +/+ or FAN -/- genotypes and grown in DMEM 0% FCS.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNeasy MidiKit following manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_hyb_protocol | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_scan_protocol | Standard Affymetrix procedures. Processed by AROS applied biotechnology (Sweden)
| | Sample_data_processing | Affymetrix Microarray Suite version 5.0. Processed by AROS applied biotechnology (Sweden)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | bruno,,Ségui
| | Sample_contact_institute | INSERM U858
| | Sample_contact_address | Av Jean Poulhes
| | Sample_contact_city | Toulouse
| | Sample_contact_state | BP84225
| | Sample_contact_zip/postal_code | 31432
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308252/suppl/GSM308252.CEL.gz
| | Sample_series_id | GSE12275
| | Sample_data_row_count | 45101
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