Search results for the GEO ID: GSE12278  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM308480 | GPL570 |
|
NAM_empty
|
Burkitt lymphoma cell line, Namalwa, empty
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Burkitt lymphoma cell line
|
NAM_empty
|
| Sample_geo_accession | GSM308480
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jul 29 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | DSMZ
| | Sample_treatment_protocol_ch1 | MiRNA expression was induced in the transfected BL cell lines by Dox treatment (0.5µg/ml) for 72 hrs.
| | Sample_growth_protocol_ch1 | human BL cell lines were cultured in RPMI medium 1640 with 10% FCS, 1% Penicillin/Streptomycin, 1% L-Glutamin, 1% non-essential amino acids, and 0.1% b-Mercaptoethanol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (manufacturer’s recommendations)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip One-Cycle cDNA Synthesis Kit (Affymetrix; manufacturer’s recommendations), amount of RNA labeled: 1µg
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GCOS software, expression values were normalized by applying the RMA algorithm using the BRB Array Tools software package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308480/suppl/GSM308480.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308480/suppl/GSM308480.CHP.gz
| | Sample_series_id | GSE12278
| | Sample_series_id | GSE12400
| | Sample_data_row_count | 54675
| | |
|
GSM308482 | GPL570 |
|
NAM_miR26a
|
Burkitt lymphoma cell line, Namalwa, miR26a
|
Burkitt lymphoma cell line
|
NAM_miR26a
|
| Sample_geo_accession | GSM308482
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jul 29 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | DSMZ
| | Sample_treatment_protocol_ch1 | MiRNA expression was induced in the transfected BL cell lines by Dox treatment (0.5µg/ml) for 72 hrs.
| | Sample_growth_protocol_ch1 | human BL cell lines were cultured in RPMI medium 1640 with 10% FCS, 1% Penicillin/Streptomycin, 1% L-Glutamin, 1% non-essential amino acids, and 0.1% b-Mercaptoethanol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (manufacturer’s recommendations)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip One-Cycle cDNA Synthesis Kit (Affymetrix; manufacturer’s recommendations), amount of RNA labeled: 1µg
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GCOS software, expression values were normalized by applying the RMA algorithm using the BRB Array Tools software package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308482/suppl/GSM308482.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308482/suppl/GSM308482.CHP.gz
| | Sample_series_id | GSE12278
| | Sample_series_id | GSE12400
| | Sample_data_row_count | 54675
| | |
|
GSM308483 | GPL570 |
|
Raji_empty
|
Burkitt lymphoma cell line, Raji, empty
|
Burkitt lymphoma cell line
|
Raji_empty
|
| Sample_geo_accession | GSM308483
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jul 29 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | DSMZ
| | Sample_treatment_protocol_ch1 | MiRNA expression was induced in the transfected BL cell lines by Dox treatment (0.5µg/ml) for 72 hrs.
| | Sample_growth_protocol_ch1 | human BL cell lines were cultured in RPMI medium 1640 with 10% FCS, 1% Penicillin/Streptomycin, 1% L-Glutamin, 1% non-essential amino acids, and 0.1% b-Mercaptoethanol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (manufacturer’s recommendations)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip One-Cycle cDNA Synthesis Kit (Affymetrix; manufacturer’s recommendations), amount of RNA labeled: 1µg
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GCOS software, expression values were normalized by applying the RMA algorithm using the BRB Array Tools software package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308483/suppl/GSM308483.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308483/suppl/GSM308483.CHP.gz
| | Sample_series_id | GSE12278
| | Sample_series_id | GSE12400
| | Sample_data_row_count | 54675
| | |
|
GSM308485 | GPL570 |
|
Raji_miR26a
|
Burkitt lymphoma cell line, Raji, miR26a
|
Burkitt lymphoma cell line
|
Raji_miR26a
|
| Sample_geo_accession | GSM308485
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jul 29 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | DSMZ
| | Sample_treatment_protocol_ch1 | MiRNA expression was induced in the transfected BL cell lines by Dox treatment (0.5µg/ml) for 72 hrs.
| | Sample_growth_protocol_ch1 | human BL cell lines were cultured in RPMI medium 1640 with 10% FCS, 1% Penicillin/Streptomycin, 1% L-Glutamin, 1% non-essential amino acids, and 0.1% b-Mercaptoethanol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (manufacturer’s recommendations)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip One-Cycle cDNA Synthesis Kit (Affymetrix; manufacturer’s recommendations), amount of RNA labeled: 1µg
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GCOS software, expression values were normalized by applying the RMA algorithm using the BRB Array Tools software package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308485/suppl/GSM308485.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308485/suppl/GSM308485.CHP.gz
| | Sample_series_id | GSE12278
| | Sample_series_id | GSE12400
| | Sample_data_row_count | 54675
| | |
|
GSM308487 | GPL570 |
|
Ramos_empty
|
Burkitt lymphoma cell line, Ramos, empty
|
Burkitt lymphoma cell line
|
Ramos_empty
|
| Sample_geo_accession | GSM308487
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jul 29 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | DSMZ
| | Sample_treatment_protocol_ch1 | MiRNA expression was induced in the transfected BL cell lines by Dox treatment (0.5µg/ml) for 72 hrs.
| | Sample_growth_protocol_ch1 | human BL cell lines were cultured in RPMI medium 1640 with 10% FCS, 1% Penicillin/Streptomycin, 1% L-Glutamin, 1% non-essential amino acids, and 0.1% b-Mercaptoethanol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (manufacturer’s recommendations)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip One-Cycle cDNA Synthesis Kit (Affymetrix; manufacturer’s recommendations), amount of RNA labeled: 1µg
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GCOS software, expression values were normalized by applying the RMA algorithm using the BRB Array Tools software package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308487/suppl/GSM308487.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308487/suppl/GSM308487.CHP.gz
| | Sample_series_id | GSE12278
| | Sample_series_id | GSE12400
| | Sample_data_row_count | 54675
| | |
|
GSM308488 | GPL570 |
|
Ramos_ miR26a
|
Burkitt lymphoma cell line, Ramos, miR26a
|
Burkitt lymphoma cell line
|
Ramos_ miR26a
|
| Sample_geo_accession | GSM308488
| | Sample_status | Public on Jul 31 2008
| | Sample_submission_date | Jul 29 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | DSMZ
| | Sample_treatment_protocol_ch1 | MiRNA expression was induced in the transfected BL cell lines by Dox treatment (0.5µg/ml) for 72 hrs.
| | Sample_growth_protocol_ch1 | human BL cell lines were cultured in RPMI medium 1640 with 10% FCS, 1% Penicillin/Streptomycin, 1% L-Glutamin, 1% non-essential amino acids, and 0.1% b-Mercaptoethanol.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (manufacturer’s recommendations)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | GeneChip One-Cycle cDNA Synthesis Kit (Affymetrix; manufacturer’s recommendations), amount of RNA labeled: 1µg
| | Sample_hyb_protocol | Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | GCOS software, expression values were normalized by applying the RMA algorithm using the BRB Array Tools software package.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Lars,,Bullinger
| | Sample_contact_email | lars.bullinger@uniklinik-ulm.de
| | Sample_contact_phone | +49-731-500-45501
| | Sample_contact_fax | +49-731-500-45505
| | Sample_contact_department | Internal Medicine III
| | Sample_contact_institute | University of Ulm
| | Sample_contact_address | Albert-Einstein-Allee 23
| | Sample_contact_city | Ulm
| | Sample_contact_zip/postal_code | 89081
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308488/suppl/GSM308488.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308488/suppl/GSM308488.CHP.gz
| | Sample_series_id | GSE12278
| | Sample_series_id | GSE12400
| | Sample_data_row_count | 54675
| | |
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