Search results for the GEO ID: GSE12288  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM308566 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3913)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 40
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308566
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308566/suppl/GSM308566.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308567 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3914)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 47
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308567
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308567/suppl/GSM308567.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308568 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3747)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 55
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308568
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308568/suppl/GSM308568.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308569 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4097)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 49
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308569
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308569/suppl/GSM308569.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308570 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3916)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 51
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308570
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308570/suppl/GSM308570.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308571 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3917)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 52
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308571
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308571/suppl/GSM308571.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308572 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3918)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 50
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308572
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308572/suppl/GSM308572.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308573 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4098)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 47
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308573
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308573/suppl/GSM308573.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308574 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4099)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 47
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308574
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308574/suppl/GSM308574.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308575 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3919)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 61
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308575
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308575/suppl/GSM308575.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308576 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4100)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 46
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308576
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308576/suppl/GSM308576.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308577 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3920)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 50
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308577
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308577/suppl/GSM308577.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308578 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3921)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 53
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308578
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308578/suppl/GSM308578.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308579 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3748)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 56
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308579
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308579/suppl/GSM308579.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308580 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4101)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 42
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308580
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308580/suppl/GSM308580.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308581 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4102)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 49
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308581
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308581/suppl/GSM308581.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308582 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4104)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 47
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308582
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308582/suppl/GSM308582.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308583 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3922)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 63
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308583
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308583/suppl/GSM308583.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308584 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4105)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 53
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308584
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308584/suppl/GSM308584.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308585 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4106)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 67
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308585
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308585/suppl/GSM308585.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308586 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3749)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 46
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308586
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308586/suppl/GSM308586.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308587 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4107)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 50
ethnicity: hispanic
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308587
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308587/suppl/GSM308587.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308588 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4108)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 51
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308588
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308588/suppl/GSM308588.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308589 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3923)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 45
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308589
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308589/suppl/GSM308589.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308590 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3924)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 58
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308590
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308590/suppl/GSM308590.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308591 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4109)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 59
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308591
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308591/suppl/GSM308591.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308592 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4110)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 37
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308592
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308592/suppl/GSM308592.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308593 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3925)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 56
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308593
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308593/suppl/GSM308593.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308594 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3926)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 53
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308594
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308594/suppl/GSM308594.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308595 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3750)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 61
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308595
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308595/suppl/GSM308595.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308596 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3927)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 51
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308596
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308596/suppl/GSM308596.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308597 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3928)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 42
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308597
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308597/suppl/GSM308597.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308598 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4113)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 67
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308598
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308598/suppl/GSM308598.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308599 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3929)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 52
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308599
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308599/suppl/GSM308599.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308600 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4114)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 47
ethnicity: afro-american
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308600
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308600/suppl/GSM308600.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308601 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d3751)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 61
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308601
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308601/suppl/GSM308601.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308602 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4115)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 40
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308602
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308602/suppl/GSM308602.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308603 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3930)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 61
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308603
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308603/suppl/GSM308603.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308604 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4116)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 63
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308604
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308604/suppl/GSM308604.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308605 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4117)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 65
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308605
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308605/suppl/GSM308605.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308606 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 37 (d4118)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 66
ethnicity: caucasian
CADi: 37
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308606
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308606/suppl/GSM308606.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308607 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 37 (d4149)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 56
ethnicity: caucasian
CADi: 37
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308607
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308607/suppl/GSM308607.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308608 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4150)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 67
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308608
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308608/suppl/GSM308608.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308609 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3932)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 54
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308609
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308609/suppl/GSM308609.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308610 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 74 (d3752)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 53
ethnicity: caucasian
CADi: 74
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308610
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308610/suppl/GSM308610.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308611 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d3933)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 50
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308611
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308611/suppl/GSM308611.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308612 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3934)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 57
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308612
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308612/suppl/GSM308612.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308613 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d4151)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 55
ethnicity: caucasian
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308613
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308613/suppl/GSM308613.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308614 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4152)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 54
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308614
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308614/suppl/GSM308614.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308615 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 42 (d3936)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 50
ethnicity: caucasian
CADi: 42
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308615
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308615/suppl/GSM308615.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308616 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d3937)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 57
ethnicity: caucasian
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308616
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308616/suppl/GSM308616.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308617 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 82 (d3753)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 59
ethnicity: afro-american
CADi: 82
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308617
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308617/suppl/GSM308617.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308618 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3938)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 42
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308618
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308618/suppl/GSM308618.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308619 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3939)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 50
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308619
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308619/suppl/GSM308619.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308620 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d4153)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308620
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308620/suppl/GSM308620.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308621 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4154)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 60
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308621
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308621/suppl/GSM308621.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308622 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d4155)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 59
ethnicity: caucasian
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308622
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308622/suppl/GSM308622.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308623 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d4156)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 44
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308623
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308623/suppl/GSM308623.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308624 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3940)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 65
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308624
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308624/suppl/GSM308624.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308625 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d3941)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 49
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308625
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308625/suppl/GSM308625.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308626 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 42 (d3942)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 46
ethnicity: caucasian
CADi: 42
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308626
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308626/suppl/GSM308626.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308627 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4157)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 49
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308627
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308627/suppl/GSM308627.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308628 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4158)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 51
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308628
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308628/suppl/GSM308628.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308629 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3883)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 38
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308629
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308629/suppl/GSM308629.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308630 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3884)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 45
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308630
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308630/suppl/GSM308630.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308631 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d3885)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 48
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308631
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308631/suppl/GSM308631.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308632 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 74 (d3886)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 40
ethnicity: caucasian
CADi: 74
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308632
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308632/suppl/GSM308632.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308633 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3887)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 51
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308633
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308633/suppl/GSM308633.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308634 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 42 (d4159)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 51
ethnicity: afro-american
CADi: 42
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308634
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308634/suppl/GSM308634.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308635 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3888)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 52
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308635
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308635/suppl/GSM308635.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308636 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3889)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 46
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308636
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308636/suppl/GSM308636.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308637 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d3890)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 50
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308637
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308637/suppl/GSM308637.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308638 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3891)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 57
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308638
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308638/suppl/GSM308638.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308639 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3892)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 48
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308639
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308639/suppl/GSM308639.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308640 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4160)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 54
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308640
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308640/suppl/GSM308640.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308641 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 42 (d3893)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 48
ethnicity: afro-american
CADi: 42
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308641
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308641/suppl/GSM308641.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308642 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 100 (d3894)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 45
ethnicity: caucasian
CADi: 100
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308642
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308642/suppl/GSM308642.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308643 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3895)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 52
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308643
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308643/suppl/GSM308643.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308644 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 37 (d3896)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 42
ethnicity: caucasian
CADi: 37
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308644
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308644/suppl/GSM308644.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308645 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 100 (d4161)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 61
ethnicity: caucasian
CADi: 100
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308645
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308645/suppl/GSM308645.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308646 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 37 (d3897)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 57
ethnicity: caucasian
CADi: 37
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308646
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308646/suppl/GSM308646.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308647 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d3754)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 46
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308647
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308647/suppl/GSM308647.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308648 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3899)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 63
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308648
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308648/suppl/GSM308648.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308649 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3900)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 58
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308649
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308649/suppl/GSM308649.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308650 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 67 (d3901)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 63
ethnicity: caucasian
CADi: 67
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308650
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308650/suppl/GSM308650.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308651 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4162)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 63
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308651
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308651/suppl/GSM308651.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308652 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3902)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 54
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308652
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308652/suppl/GSM308652.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308653 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d3903)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 53
ethnicity: caucasian
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308653
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308653/suppl/GSM308653.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308654 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4163)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 57
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308654
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308654/suppl/GSM308654.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308655 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d3904)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 63
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308655
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308655/suppl/GSM308655.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308656 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3905)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 42
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308656
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308656/suppl/GSM308656.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308657 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3906)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308657
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308657/suppl/GSM308657.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308658 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d4164)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 55
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308658
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308658/suppl/GSM308658.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308659 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 100 (d4165)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 57
ethnicity: caucasian
CADi: 100
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308659
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308659/suppl/GSM308659.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308660 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4166)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 62
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308660
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308660/suppl/GSM308660.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308661 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3755)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 44
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308661
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308661/suppl/GSM308661.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308662 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4167)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 47
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308662
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308662/suppl/GSM308662.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308663 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4168)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 54
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308663
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308663/suppl/GSM308663.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308664 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 74 (d4169)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 56
ethnicity: caucasian
CADi: 74
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308664
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308664/suppl/GSM308664.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308665 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4170)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 47
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308665
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308665/suppl/GSM308665.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308666 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 37 (d4171)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 63
ethnicity: caucasian
CADi: 37
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308666
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308666/suppl/GSM308666.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308667 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 74 (d3909)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 62
ethnicity: caucasian
CADi: 74
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308667
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308667/suppl/GSM308667.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308668 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d3910)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 44
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308668
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308668/suppl/GSM308668.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308669 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d4172)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 54
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308669
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308669/suppl/GSM308669.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308670 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 74 (d3756)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 60
ethnicity: caucasian
CADi: 74
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308670
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308670/suppl/GSM308670.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308671 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4173)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 56
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308671
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308671/suppl/GSM308671.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308672 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d3757)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 51
ethnicity: caucasian
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308672
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308672/suppl/GSM308672.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308673 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 42 (d4174)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 55
ethnicity: caucasian
CADi: 42
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308673
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308673/suppl/GSM308673.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308674 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4175)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 40
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308674
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308674/suppl/GSM308674.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308675 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 42 (d4176)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 42
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308675
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308675/suppl/GSM308675.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308676 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4177)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308676
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308676/suppl/GSM308676.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308677 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4037)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 50
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308677
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308677/suppl/GSM308677.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308678 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4178)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 67
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308678
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308678/suppl/GSM308678.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308679 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4179)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 55
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308679
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308679/suppl/GSM308679.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308680 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4180)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 39
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308680
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308680/suppl/GSM308680.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308681 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d4181)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 54
ethnicity: caucasian
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308681
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308681/suppl/GSM308681.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308682 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4038)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 54
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308682
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308682/suppl/GSM308682.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308683 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3758)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 61
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308683
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308683/suppl/GSM308683.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308684 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4182)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 60
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308684
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308684/suppl/GSM308684.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308685 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 67 (d4039)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 50
ethnicity: caucasian
CADi: 67
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308685
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308685/suppl/GSM308685.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308686 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4040)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 51
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308686
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308686/suppl/GSM308686.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308687 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4183)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 46
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308687
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308687/suppl/GSM308687.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308688 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4184)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 60
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308688
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308688/suppl/GSM308688.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308689 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 74 (d4041)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 59
ethnicity: caucasian
CADi: 74
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308689
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308689/suppl/GSM308689.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308690 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 56 (d4185)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 56
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308690
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308690/suppl/GSM308690.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308691 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 67 (d4042)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 57
ethnicity: caucasian
CADi: 67
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308691
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308691/suppl/GSM308691.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308692 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 100 (d4186)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 54
ethnicity: caucasian
CADi: 100
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308692
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308692/suppl/GSM308692.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308693 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d4043)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308693
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308693/suppl/GSM308693.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308694 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4044)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 48
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308694
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308694/suppl/GSM308694.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308695 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4045)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 54
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308695
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308695/suppl/GSM308695.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308696 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4046)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 60
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308696
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308696/suppl/GSM308696.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308697 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4187)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 55
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308697
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308697/suppl/GSM308697.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308698 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4047)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 39
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308698
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308698/suppl/GSM308698.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308699 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d4048)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308699
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308699/suppl/GSM308699.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308700 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4188)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 67
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308700
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308700/suppl/GSM308700.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308701 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4049)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 57
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308701
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308701/suppl/GSM308701.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308702 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4189)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 50
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308702
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308702/suppl/GSM308702.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308703 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 74 (d4190)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 63
ethnicity: caucasian
CADi: 74
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308703
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308703/suppl/GSM308703.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308704 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 74 (d3759)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 60
ethnicity: caucasian
CADi: 74
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308704
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308704/suppl/GSM308704.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308705 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3760)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 43
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308705
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308705/suppl/GSM308705.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308706 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4119)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 68
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308706
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308706/suppl/GSM308706.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308707 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 74 (d4191)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 67
ethnicity: caucasian
CADi: 74
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308707
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308707/suppl/GSM308707.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308708 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4192)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 67
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308708
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308708/suppl/GSM308708.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308709 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4193)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 55
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308709
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308709/suppl/GSM308709.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308710 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4051)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 58
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308710
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308710/suppl/GSM308710.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308711 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4052)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308711
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308711/suppl/GSM308711.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308712 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3761)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 43
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308712
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308712/suppl/GSM308712.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308713 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4120)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 54
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308713
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308713/suppl/GSM308713.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308714 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4194)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 40
ethnicity: asian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308714
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308714/suppl/GSM308714.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308715 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d4121)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 48
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308715
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308715/suppl/GSM308715.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308716 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3762)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 59
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308716
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308716/suppl/GSM308716.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308717 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4053)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 62
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308717
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308717/suppl/GSM308717.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308718 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4122)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 67
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308718
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308718/suppl/GSM308718.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308719 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4054)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308719
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308719/suppl/GSM308719.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308720 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4123)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 46
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308720
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308720/suppl/GSM308720.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308721 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4124)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 48
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308721
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308721/suppl/GSM308721.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308722 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3763)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 54
ethnicity: native american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308722
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308722/suppl/GSM308722.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308723 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d3764)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 53
ethnicity: afro-american
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308723
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308723/suppl/GSM308723.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308724 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 82 (d3765)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 54
ethnicity: caucasian
CADi: 82
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308724
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308724/suppl/GSM308724.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308725 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 82 (d4195)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 68
ethnicity: native american
CADi: 82
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308725
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308725/suppl/GSM308725.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308726 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4055)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 54
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308726
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308726/suppl/GSM308726.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308727 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4056)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308727
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308727/suppl/GSM308727.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308728 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4125)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 44
ethnicity: native american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308728
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308728/suppl/GSM308728.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308729 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4126)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 55
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308729
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308729/suppl/GSM308729.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308730 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4057)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 63
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308730
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308730/suppl/GSM308730.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308731 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3766)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 52
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308731
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308731/suppl/GSM308731.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308732 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4196)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 50
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308732
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308732/suppl/GSM308732.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308733 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3767)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 56
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308733
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308733/suppl/GSM308733.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308734 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4197)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 54
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308734
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308734/suppl/GSM308734.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308735 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4058)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 42
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308735
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308735/suppl/GSM308735.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308736 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4127)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 50
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308736
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308736/suppl/GSM308736.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308737 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4128)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 55
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308737
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308737/suppl/GSM308737.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308738 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4129)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 50
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308738
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308738/suppl/GSM308738.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308739 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3768)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 61
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308739
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308739/suppl/GSM308739.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308740 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4198)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 60
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308740
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308740/suppl/GSM308740.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308741 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d4130)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 58
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308741
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308741/suppl/GSM308741.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308742 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 48 (d4131)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 51
ethnicity: caucasian
CADi: 48
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308742
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308742/suppl/GSM308742.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308743 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 74 (d4199)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 67
ethnicity: caucasian
CADi: 74
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308743
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308743/suppl/GSM308743.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308744 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3769)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 45
ethnicity: hispanic
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308744
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308744/suppl/GSM308744.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308745 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d4132)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 53
ethnicity: caucasian
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308745
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308745/suppl/GSM308745.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308746 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4059)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 56
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308746
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308746/suppl/GSM308746.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308747 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 67 (d4200)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 64
ethnicity: caucasian
CADi: 67
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308747
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308747/suppl/GSM308747.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308748 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4201)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 44
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308748
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308748/suppl/GSM308748.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308749 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4202)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 59
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308749
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308749/suppl/GSM308749.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308750 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4133)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 47
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308750
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308750/suppl/GSM308750.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308751 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4061)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 54
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308751
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308751/suppl/GSM308751.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308752 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d4134)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 54
ethnicity: caucasian
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308752
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308752/suppl/GSM308752.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308753 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4135)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 56
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308753
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308753/suppl/GSM308753.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308754 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d4136)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 60
ethnicity: caucasian
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308754
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308754/suppl/GSM308754.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308755 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 23 (d4137)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 62
ethnicity: afro-american
CADi: 23
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308755
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308755/suppl/GSM308755.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308756 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4138)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 44
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308756
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308756/suppl/GSM308756.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308757 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4063)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 49
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308757
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308757/suppl/GSM308757.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308758 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4139)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 47
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308758
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308758/suppl/GSM308758.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308759 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3770)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: case
sex: m
age: 52
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308759
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308759/suppl/GSM308759.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308760 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4064)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 56
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308760
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308760/suppl/GSM308760.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308761 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4140)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 50
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308761
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308761/suppl/GSM308761.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308762 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3771)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 50
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308762
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308762/suppl/GSM308762.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308763 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4141)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 37
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308763
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308763/suppl/GSM308763.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308764 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4142)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 64
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308764
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308764/suppl/GSM308764.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308765 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4203)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 51
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308765
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308765/suppl/GSM308765.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308766 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4065)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 42
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308766
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308766/suppl/GSM308766.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308767 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d3772)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 43
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308767
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308767/suppl/GSM308767.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308768 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4204)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 37
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308768
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308768/suppl/GSM308768.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308769 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4143)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 52
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308769
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308769/suppl/GSM308769.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308770 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4066)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 42
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308770
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308770/suppl/GSM308770.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308771 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4205)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: control
sex: m
age: 66
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308771
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308771/suppl/GSM308771.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308772 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4144)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 58
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308772
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308772/suppl/GSM308772.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308773 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3773)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 53
ethnicity: afro-american
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308773
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308773/suppl/GSM308773.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308774 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4145)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 62
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308774
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308774/suppl/GSM308774.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308775 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 100 (d4146)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 49
ethnicity: caucasian
CADi: 100
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308775
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308775/suppl/GSM308775.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308776 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 67 (d3774)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 62
ethnicity: asian
CADi: 67
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308776
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308776/suppl/GSM308776.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308777 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4147)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 47
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308777
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308777/suppl/GSM308777.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308778 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4148)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 65
ethnicity: afro-american
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308778
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308778/suppl/GSM308778.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308779 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4089)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 49
ethnicity: afro-american
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308779
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308779/suppl/GSM308779.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308780 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3775)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 37
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308780
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308780/suppl/GSM308780.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308781 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4090)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 64
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308781
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308781/suppl/GSM308781.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308782 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 63 (d4091)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 52
ethnicity: other
CADi: 63
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308782
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308782/suppl/GSM308782.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308783 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d3776)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: case
sex: f
age: 59
ethnicity: caucasian
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308783
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308783/suppl/GSM308783.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308784 | GPL96 |
|
Patient with CAD; patient group: case; CADi: 32 (d4206)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: others
patient group: case
sex: m
age: 54
ethnicity: afro-american
CADi: 32
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308784
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308784/suppl/GSM308784.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308785 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4095)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 59
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308785
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308785/suppl/GSM308785.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308786 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4096)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: females
patient group: control
sex: f
age: 62
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308786
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308786/suppl/GSM308786.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
GSM308787 | GPL96 |
|
Patient with CAD; patient group: control; CADi: 0 (d4067)
|
Homo sapiens;tissue: blood cells
|
tissue: blood cells
cohort: pooled
patient group: control
sex: m
age: 52
ethnicity: caucasian
CADi: 0
|
Gene expression analysis in patient with coronary artery disease (CADi>0) in comparison to control patients (CADi=0)
|
| Sample_geo_accession | GSM308787
| | Sample_status | Public on Oct 31 2008
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Peter,,Grass
| | Sample_contact_email | peter.grass@novartis.com
| | Sample_contact_phone | +41 61 6961558
| | Sample_contact_laboratory | QB
| | Sample_contact_department | DMP
| | Sample_contact_institute | Novartis
| | Sample_contact_address | Klybeck Strasse
| | Sample_contact_city | Basel
| | Sample_contact_zip/postal_code | 4001
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM308nnn/GSM308787/suppl/GSM308787.CEL.gz
| | Sample_series_id | GSE12288
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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