Search results for the GEO ID: GSE12296  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM309171 | GPL1355 |
|
Gastroc m. Drug Treatment 7 Days Control 1
|
gastrocnemius muscle
|
male Wistar-Hannover rat approx 250 g
|
vehicle
|
| Sample_geo_accession | GSM309171
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Male Wistar rats (250 g) were administered vehicle (propylene glycol), dexamethasone (0.7 mg/kg/day), or dexamethasone plus testosterone (28 mg/kg/day) for 7 days using Alzet pumps.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Muscle (20 mg) was homogenized in guanidine isothiocyanate buffer using a polytron. Total RNA was extracted using phenol chloroform then cleaned up using RNA easy columgs.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_scan_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_data_processing | Normalization, initial filtering, and determination of significant changes in expression were performed using BRB Array tools v 3.6
| | Sample_data_processing | Data for each array were normalized using the median for the entire array; expression values were set to 10 if below this value, and excluded from further analysis if more than 20% of the values were at least 1.5-fold greater or smaller than the median for that probe set.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | christopher,p,cardozo
| | Sample_contact_email | chris.cardozo@mssm.edu
| | Sample_contact_phone | 718-584-9000 x 1828
| | Sample_contact_fax | 718-741-4675
| | Sample_contact_laboratory | Room 1E-02
| | Sample_contact_department | CMSCI
| | Sample_contact_institute | Bronx VA Medical Center
| | Sample_contact_address | 130 West Kingsbridge Road
| | Sample_contact_city | Bronx
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10468
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309171/suppl/GSM309171.CEL.gz
| | Sample_series_id | GSE12296
| | Sample_data_row_count | 31099
| | |
|
GSM309172 | GPL1355 |
|
Gastroc m. Drug Treatment 7 days Control 2
|
gastrocnemius muscle
|
male Wistar-Hannover rat approx 250 g
|
vehicle
|
| Sample_geo_accession | GSM309172
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Male Wistar rats (250 g) were administered vehicle (propylene glycol), dexamethasone (0.7 mg/kg/day), or dexamethasone plus testosterone (28 mg/kg/day) for 7 days using Alzet pumps.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Muscle (20 mg) was homogenized in guanidine isothiocyanate buffer using a polytron. Total RNA was extracted using phenol chloroform then cleaned up using RNA easy columgs.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_scan_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_data_processing | Normalization, initial filtering, and determination of significant changes in expression were performed using BRB Array tools v 3.6
| | Sample_data_processing | Data for each array were normalized using the median for the entire array; expression values were set to 10 if below this value, and excluded from further analysis if more than 20% of the values were at least 1.5-fold greater or smaller than the median for that probe set.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | christopher,p,cardozo
| | Sample_contact_email | chris.cardozo@mssm.edu
| | Sample_contact_phone | 718-584-9000 x 1828
| | Sample_contact_fax | 718-741-4675
| | Sample_contact_laboratory | Room 1E-02
| | Sample_contact_department | CMSCI
| | Sample_contact_institute | Bronx VA Medical Center
| | Sample_contact_address | 130 West Kingsbridge Road
| | Sample_contact_city | Bronx
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10468
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309172/suppl/GSM309172.CEL.gz
| | Sample_series_id | GSE12296
| | Sample_data_row_count | 31099
| | |
|
GSM309173 | GPL1355 |
|
Gastroc m. Drug Treatment 7 Days Control 3
|
gastrocnemius muscle
|
male Wistar-Hannover rat approx 250 g
|
vehicle
|
| Sample_geo_accession | GSM309173
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Male Wistar rats (250 g) were administered vehicle (propylene glycol), dexamethasone (0.7 mg/kg/day), or dexamethasone plus testosterone (28 mg/kg/day) for 7 days using Alzet pumps.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Muscle (20 mg) was homogenized in guanidine isothiocyanate buffer using a polytron. Total RNA was extracted using phenol chloroform then cleaned up using RNA easy columgs.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_scan_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_data_processing | Normalization, initial filtering, and determination of significant changes in expression were performed using BRB Array tools v 3.6
| | Sample_data_processing | Data for each array were normalized using the median for the entire array; expression values were set to 10 if below this value, and excluded from further analysis if more than 20% of the values were at least 1.5-fold greater or smaller than the median for that probe set.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | christopher,p,cardozo
| | Sample_contact_email | chris.cardozo@mssm.edu
| | Sample_contact_phone | 718-584-9000 x 1828
| | Sample_contact_fax | 718-741-4675
| | Sample_contact_laboratory | Room 1E-02
| | Sample_contact_department | CMSCI
| | Sample_contact_institute | Bronx VA Medical Center
| | Sample_contact_address | 130 West Kingsbridge Road
| | Sample_contact_city | Bronx
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10468
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309173/suppl/GSM309173.CEL.gz
| | Sample_series_id | GSE12296
| | Sample_data_row_count | 31099
| | |
|
GSM309174 | GPL1355 |
|
Gastroc m. Drug Treatment 7 Days Dex 1
|
gastrocnemius muscle
|
male Wistar-Hannover rat approx 250 g
|
dexamethasone
|
| Sample_geo_accession | GSM309174
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Male Wistar rats (250 g) were administered vehicle (propylene glycol), dexamethasone (0.7 mg/kg/day), or dexamethasone plus testosterone (28 mg/kg/day) for 7 days using Alzet pumps.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Muscle (20 mg) was homogenized in guanidine isothiocyanate buffer using a polytron. Total RNA was extracted using phenol chloroform then cleaned up using RNA easy columgs.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_scan_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_data_processing | Normalization, initial filtering, and determination of significant changes in expression were performed using BRB Array tools v 3.6
| | Sample_data_processing | Data for each array were normalized using the median for the entire array; expression values were set to 10 if below this value, and excluded from further analysis if more than 20% of the values were at least 1.5-fold greater or smaller than the median for that probe set.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | christopher,p,cardozo
| | Sample_contact_email | chris.cardozo@mssm.edu
| | Sample_contact_phone | 718-584-9000 x 1828
| | Sample_contact_fax | 718-741-4675
| | Sample_contact_laboratory | Room 1E-02
| | Sample_contact_department | CMSCI
| | Sample_contact_institute | Bronx VA Medical Center
| | Sample_contact_address | 130 West Kingsbridge Road
| | Sample_contact_city | Bronx
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10468
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309174/suppl/GSM309174.CEL.gz
| | Sample_series_id | GSE12296
| | Sample_data_row_count | 31099
| | |
|
GSM309175 | GPL1355 |
|
Gastroc m. Drug Treatment 7 Days Dex 2
|
gastrocnemius muscle
|
male Wistar-Hannover rat approx 250 g
|
dexamethasone
|
| Sample_geo_accession | GSM309175
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Male Wistar rats (250 g) were administered vehicle (propylene glycol), dexamethasone (0.7 mg/kg/day), or dexamethasone plus testosterone (28 mg/kg/day) for 7 days using Alzet pumps.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Muscle (20 mg) was homogenized in guanidine isothiocyanate buffer using a polytron. Total RNA was extracted using phenol chloroform then cleaned up using RNA easy columgs.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_scan_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_data_processing | Normalization, initial filtering, and determination of significant changes in expression were performed using BRB Array tools v 3.6
| | Sample_data_processing | Data for each array were normalized using the median for the entire array; expression values were set to 10 if below this value, and excluded from further analysis if more than 20% of the values were at least 1.5-fold greater or smaller than the median for that probe set.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | christopher,p,cardozo
| | Sample_contact_email | chris.cardozo@mssm.edu
| | Sample_contact_phone | 718-584-9000 x 1828
| | Sample_contact_fax | 718-741-4675
| | Sample_contact_laboratory | Room 1E-02
| | Sample_contact_department | CMSCI
| | Sample_contact_institute | Bronx VA Medical Center
| | Sample_contact_address | 130 West Kingsbridge Road
| | Sample_contact_city | Bronx
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10468
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309175/suppl/GSM309175.CEL.gz
| | Sample_series_id | GSE12296
| | Sample_data_row_count | 31099
| | |
|
GSM309176 | GPL1355 |
|
Gastroc m. Drug Treatment 7 Days Dex 3
|
gastrocnemius muscle
|
male Wistar-Hannover rat approx 250 g
|
dexamethasone
|
| Sample_geo_accession | GSM309176
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Male Wistar rats (250 g) were administered vehicle (propylene glycol), dexamethasone (0.7 mg/kg/day), or dexamethasone plus testosterone (28 mg/kg/day) for 7 days using Alzet pumps.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Muscle (20 mg) was homogenized in guanidine isothiocyanate buffer using a polytron. Total RNA was extracted using phenol chloroform then cleaned up using RNA easy columgs.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_scan_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_data_processing | Normalization, initial filtering, and determination of significant changes in expression were performed using BRB Array tools v 3.6
| | Sample_data_processing | Data for each array were normalized using the median for the entire array; expression values were set to 10 if below this value, and excluded from further analysis if more than 20% of the values were at least 1.5-fold greater or smaller than the median for that probe set.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | christopher,p,cardozo
| | Sample_contact_email | chris.cardozo@mssm.edu
| | Sample_contact_phone | 718-584-9000 x 1828
| | Sample_contact_fax | 718-741-4675
| | Sample_contact_laboratory | Room 1E-02
| | Sample_contact_department | CMSCI
| | Sample_contact_institute | Bronx VA Medical Center
| | Sample_contact_address | 130 West Kingsbridge Road
| | Sample_contact_city | Bronx
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10468
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309176/suppl/GSM309176.CEL.gz
| | Sample_series_id | GSE12296
| | Sample_data_row_count | 31099
| | |
|
GSM309177 | GPL1355 |
|
Gastroc m. Drug Treatment 7 Days DexTs 1
|
gastrocnemius muscle
|
male Wistar-Hannover rat approx 250 g
|
dexamethasone + testosterone
|
| Sample_geo_accession | GSM309177
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Male Wistar rats (250 g) were administered vehicle (propylene glycol), dexamethasone (0.7 mg/kg/day), or dexamethasone plus testosterone (28 mg/kg/day) for 7 days using Alzet pumps.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Muscle (20 mg) was homogenized in guanidine isothiocyanate buffer using a polytron. Total RNA was extracted using phenol chloroform then cleaned up using RNA easy columgs.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_scan_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_data_processing | Normalization, initial filtering, and determination of significant changes in expression were performed using BRB Array tools v 3.6
| | Sample_data_processing | Data for each array were normalized using the median for the entire array; expression values were set to 10 if below this value, and excluded from further analysis if more than 20% of the values were at least 1.5-fold greater or smaller than the median for that probe set.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | christopher,p,cardozo
| | Sample_contact_email | chris.cardozo@mssm.edu
| | Sample_contact_phone | 718-584-9000 x 1828
| | Sample_contact_fax | 718-741-4675
| | Sample_contact_laboratory | Room 1E-02
| | Sample_contact_department | CMSCI
| | Sample_contact_institute | Bronx VA Medical Center
| | Sample_contact_address | 130 West Kingsbridge Road
| | Sample_contact_city | Bronx
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10468
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309177/suppl/GSM309177.CEL.gz
| | Sample_series_id | GSE12296
| | Sample_data_row_count | 31099
| | |
|
GSM309178 | GPL1355 |
|
Gastroc m. Drug Treatment 7 Days DexTs 2
|
gastrocnemius muscle
|
male Wistar-Hannover rat approx 250 g
|
dexamethasone + testosterone
|
| Sample_geo_accession | GSM309178
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Male Wistar rats (250 g) were administered vehicle (propylene glycol), dexamethasone (0.7 mg/kg/day), or dexamethasone plus testosterone (28 mg/kg/day) for 7 days using Alzet pumps.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Muscle (20 mg) was homogenized in guanidine isothiocyanate buffer using a polytron. Total RNA was extracted using phenol chloroform then cleaned up using RNA easy columgs.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_scan_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_data_processing | Normalization, initial filtering, and determination of significant changes in expression were performed using BRB Array tools v 3.6
| | Sample_data_processing | Data for each array were normalized using the median for the entire array; expression values were set to 10 if below this value, and excluded from further analysis if more than 20% of the values were at least 1.5-fold greater or smaller than the median for that probe set.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | christopher,p,cardozo
| | Sample_contact_email | chris.cardozo@mssm.edu
| | Sample_contact_phone | 718-584-9000 x 1828
| | Sample_contact_fax | 718-741-4675
| | Sample_contact_laboratory | Room 1E-02
| | Sample_contact_department | CMSCI
| | Sample_contact_institute | Bronx VA Medical Center
| | Sample_contact_address | 130 West Kingsbridge Road
| | Sample_contact_city | Bronx
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10468
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309178/suppl/GSM309178.CEL.gz
| | Sample_series_id | GSE12296
| | Sample_data_row_count | 31099
| | |
|
GSM309179 | GPL1355 |
|
Gastroc m. Drug Treatment 7 Days DexTs 3
|
gastrocnemius muscle
|
male Wistar-Hannover rat approx 250 g
|
dexamethasone + testosterone
|
| Sample_geo_accession | GSM309179
| | Sample_status | Public on Jul 01 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 30 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Male Wistar rats (250 g) were administered vehicle (propylene glycol), dexamethasone (0.7 mg/kg/day), or dexamethasone plus testosterone (28 mg/kg/day) for 7 days using Alzet pumps.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Muscle (20 mg) was homogenized in guanidine isothiocyanate buffer using a polytron. Total RNA was extracted using phenol chloroform then cleaned up using RNA easy columgs.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_scan_protocol | Standard Affymetrix protocol for the rat 230-2 array.
| | Sample_data_processing | Normalization, initial filtering, and determination of significant changes in expression were performed using BRB Array tools v 3.6
| | Sample_data_processing | Data for each array were normalized using the median for the entire array; expression values were set to 10 if below this value, and excluded from further analysis if more than 20% of the values were at least 1.5-fold greater or smaller than the median for that probe set.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | christopher,p,cardozo
| | Sample_contact_email | chris.cardozo@mssm.edu
| | Sample_contact_phone | 718-584-9000 x 1828
| | Sample_contact_fax | 718-741-4675
| | Sample_contact_laboratory | Room 1E-02
| | Sample_contact_department | CMSCI
| | Sample_contact_institute | Bronx VA Medical Center
| | Sample_contact_address | 130 West Kingsbridge Road
| | Sample_contact_city | Bronx
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10468
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309179/suppl/GSM309179.CEL.gz
| | Sample_series_id | GSE12296
| | Sample_data_row_count | 31099
| | |
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