Search results for the GEO ID: GSE12304  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM309352 | GPL1355 |
|
DOC 7h
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with deoxycholic acid (DOC).
|
| Sample_geo_accession | GSM309352
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with deoxycholic acid (DOC, 2 mM) and animal was sacrificed 7 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309352/suppl/GSM309352.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309401 | GPL1355 |
|
DOC 24h
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with deoxycholic acid (DOC).
|
| Sample_geo_accession | GSM309401
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with deoxycholic acid (DOC, 2 mM) and animal was sacrificed 24 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309401/suppl/GSM309401.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309402 | GPL1355 |
|
DOC 48h
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with deoxycholic acid (DOC).
|
| Sample_geo_accession | GSM309402
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with deoxycholic acid (DOC, 2 mM) and animal was sacrificed 48 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309402/suppl/GSM309402.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309403 | GPL1355 |
|
Albumin 8h
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with bovine serum albumin.
|
| Sample_geo_accession | GSM309403
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with bovine serum albumin (BSA, 0.1 mM) corresponding to 25% of serum albumin concentration. Animal was sacrificed 8 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309403/suppl/GSM309403.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309404 | GPL1355 |
|
Albumin 24h
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with bovine serum albumin.
|
| Sample_geo_accession | GSM309404
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with bovine serum albumin (BSA, 0.1 mM) corresponding to 25% of serum albumin concentration. Animal was sacrificed 24 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309404/suppl/GSM309404.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309405 | GPL1355 |
|
Albumin 48h
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with bovine serum albumin.
|
| Sample_geo_accession | GSM309405
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with bovine serum albumin (BSA, 0.1 mM) corresponding to 25% of serum albumin concentration. Animal was sacrificed 48 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309405/suppl/GSM309405.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309406 | GPL1355 |
|
TGF-Beta 8h
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with TGF-Beta1.
|
| Sample_geo_accession | GSM309406
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with TGF-Beta1 (10 ng/ml). Animal was sacrificed 8 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309406/suppl/GSM309406.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309407 | GPL1355 |
|
TGF-Beta 24h
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with TGF-Beta1.
|
| Sample_geo_accession | GSM309407
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with TGF-Beta1 (10 ng/ml). Animal was sacrificed 24 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309407/suppl/GSM309407.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309408 | GPL1355 |
|
TGF-Beta 48h
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with TGF-Beta1.
|
| Sample_geo_accession | GSM309408
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with TGF-Beta1 (10 ng/ml). Animal was sacrificed 48 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309408/suppl/GSM309408.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309409 | GPL1355 |
|
Sham 24h
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from sham operated rat.
|
| Sample_geo_accession | GSM309409
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Sham operated animal
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309409/suppl/GSM309409.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309411 | GPL1355 |
|
Set 2 - Albumin 24h rep1
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with bovine serum albumin.
|
| Sample_geo_accession | GSM309411
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with bovine serum albumin (BSA, 0.1 mM) corresponding to 25% of serum albumin concentration. Animal was sacrificed 24h following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309411/suppl/GSM309411.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309412 | GPL1355 |
|
Set 2 - Albumin 24h rep2
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with bovine serum albumin.
|
| Sample_geo_accession | GSM309412
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with bovine serum albumin (BSA, 0.1 mM) corresponding to 25% of serum albumin concentration. Animal was sacrificed 24h following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309412/suppl/GSM309412.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309413 | GPL1355 |
|
Set 2 - Albumin 24h rep3
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with bovine serum albumin.
|
| Sample_geo_accession | GSM309413
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with bovine serum albumin (BSA, 0.1 mM) corresponding to 25% of serum albumin concentration. Animal was sacrificed 24h following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309413/suppl/GSM309413.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309414 | GPL1355 |
|
Set 2 - Albumin plus blockers 24h rep1
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with bovine serum albumin plus TGF-Beta receptor blockers.
|
| Sample_geo_accession | GSM309414
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with bovine serum albumin plus TGF-Beta receptor blockers (TGF-BetaR2 antibody, 50 μg/ml; SB431542, 100 μM). Animal was sacrificed 24 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309414/suppl/GSM309414.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309415 | GPL1355 |
|
Set 2 - Albumin plus blockers 24h rep2
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with bovine serum albumin plus TGF-Beta receptor blockers.
|
| Sample_geo_accession | GSM309415
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with bovine serum albumin plus TGF-Beta receptor blockers (TGF-BetaR2 antibody, 50 μg/ml; SB431542, 100 μM). Animal was sacrificed 24 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309415/suppl/GSM309415.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309416 | GPL1355 |
|
Set 2 - Albumin plus blockers 24h rep3
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with bovine serum albumin plus TGF-Beta receptor blockers.
|
| Sample_geo_accession | GSM309416
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with bovine serum albumin plus TGF-Beta receptor blockers (TGF-BetaR2 antibody, 50 μg/ml; SB431542, 100 μM). Animal was sacrificed 24 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309416/suppl/GSM309416.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309417 | GPL1355 |
|
Set 2 - Albumin plus blockers 24h rep4
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from rat treated with bovine serum albumin plus TGF-Beta receptor blockers.
|
| Sample_geo_accession | GSM309417
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Somatosensory cortex was perfused with ACSF supplemented with bovine serum albumin plus TGF-Beta receptor blockers (TGF-BetaR2 antibody, 50 μg/ml; SB431542, 100 μM). Animal was sacrificed 24 hours following treatment.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309417/suppl/GSM309417.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309418 | GPL1355 |
|
Set 2 - Sham 24h rep1
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from sham operated rat.
|
| Sample_geo_accession | GSM309418
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | sham operated animal
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309418/suppl/GSM309418.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
|
GSM309419 | GPL1355 |
|
Set 2 - Sham 24h rep2
|
Rat somatosensory cortex
|
Strain: Wistar
Gender: male
Age: adult
|
Gene expression data from sham operated rat.
|
| Sample_geo_accession | GSM309419
| | Sample_status | Public on Jul 15 2009
| | Sample_submission_date | Jul 30 2008
| | Sample_last_update_date | Jul 02 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | sham operated animal
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix)
| | Sample_hyb_protocol | Standard Affymetrix procedures
| | Sample_scan_protocol | Standard Affymetrix procedures
| | Sample_data_processing | Expression values were determined using GCRMA.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Luisa,,Cacheaux
| | Sample_contact_institute | UC Berkeley
| | Sample_contact_address | 5155 Valley Life Sciences Building
| | Sample_contact_city | Berkeley
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309419/suppl/GSM309419.CEL.gz
| | Sample_series_id | GSE12304
| | Sample_data_row_count | 31099
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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