Search results for the GEO ID: GSE12320  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM309615 | GPL570 |
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GBS6 cells transfected with negative control siRNA (1st)
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GBS6 cells established from a t(6;22) undifferentiated bone sarcoma
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cell line: GBS6
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GBS6 cells were established from an undifferentiated bone sarcoma carrying a t(6;22)(p21;q12). The translocation resulted in a gene fusion between EWS and POU5F1.
Gene expression analysis of t(6;22) undifferentiated sarcoma cell line GBS6 transfected with negative control siRNA.
|
| Sample_geo_accession | GSM309615
| | Sample_status | Public on May 31 2009
| | Sample_submission_date | Aug 03 2008
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | The Cancer Institute of Japanese Foundation for Cancer Research
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640 medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNA-Bee (Tel-Test) according to manufacturer’s protocol.
| | Sample_label_ch1 | Biotin-labelled.
| | Sample_label_protocol_ch1 | According to Affymetrix's instructions.
| | Sample_hyb_protocol | According to Affymetrix's instructions.
| | Sample_scan_protocol | According to Affymetrix's instructions.
| | Sample_data_processing | Affymetrix MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takashi,,Fujino
| | Sample_contact_email | tfujino@ks.kyorin-u.ac.jp
| | Sample_contact_phone | +81-3-3520-0111
| | Sample_contact_department | Carcinogenesis
| | Sample_contact_institute | The Cancer Institute of Japanese Foundation of Cancer Research
| | Sample_contact_address | 3-10-6 Ariake
| | Sample_contact_city | Koto ward
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309615/suppl/GSM309615.CEL.gz
| | Sample_series_id | GSE12320
| | Sample_data_row_count | 54675
| | |
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GSM309616 | GPL570 |
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GBS6 cells transfected with POU5F1 siRNA-1 (1st)
|
GBS6 cells established from a t(6;22) undifferentiated bone sarcoma
|
cell line: GBS6
|
GBS6 cells were established from an undifferentiated bone sarcoma carrying a t(6;22)(p21;q12). The translocation resulted in a gene fusion between EWS and POU5F1.
Gene expression analysis of t(6;22) undifferentiated sarcoma cell line GBS6 transfected with POU5F1 specific siRNA-1.
|
| Sample_geo_accession | GSM309616
| | Sample_status | Public on May 31 2009
| | Sample_submission_date | Aug 03 2008
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | The Cancer Institute of Japanese Foundation for Cancer Research
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640 medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNA-Bee (Tel-Test) according to manufacturer’s protocol.
| | Sample_label_ch1 | Biotin-labelled.
| | Sample_label_protocol_ch1 | According to Affymetrix's instructions.
| | Sample_hyb_protocol | According to Affymetrix's instructions.
| | Sample_scan_protocol | According to Affymetrix's instructions.
| | Sample_data_processing | Affymetrix MAS5
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takashi,,Fujino
| | Sample_contact_email | tfujino@ks.kyorin-u.ac.jp
| | Sample_contact_phone | +81-3-3520-0111
| | Sample_contact_department | Carcinogenesis
| | Sample_contact_institute | The Cancer Institute of Japanese Foundation of Cancer Research
| | Sample_contact_address | 3-10-6 Ariake
| | Sample_contact_city | Koto ward
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309616/suppl/GSM309616.CEL.gz
| | Sample_series_id | GSE12320
| | Sample_data_row_count | 54675
| | |
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GSM309617 | GPL570 |
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GBS6 cells transfected with POU5F1 siRNA-2 (1st)
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GBS6 cells established from a t(6;22) undifferentiated bone sarcoma
|
cell line: GBS6
|
GBS6 cells were established from an undifferentiated bone sarcoma carrying a t(6;22)(p21;q12). The translocation resulted in a gene fusion between EWS and POU5F1.
Gene expression analysis of t(6;22) undifferentiated sarcoma cell line GBS6 transfected with POU5F1 specific siRNA-2.
|
| Sample_geo_accession | GSM309617
| | Sample_status | Public on May 31 2009
| | Sample_submission_date | Aug 03 2008
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | The Cancer Institute of Japanese Foundation for Cancer Research
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640 medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNA-Bee (Tel-Test) according to manufacturer’s protocol.
| | Sample_label_ch1 | Biotin-labelled.
| | Sample_label_protocol_ch1 | According to Affymetrix's instructions.
| | Sample_hyb_protocol | According to Affymetrix's instructions.
| | Sample_scan_protocol | According to Affymetrix's instructions.
| | Sample_data_processing | Affymetrix MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takashi,,Fujino
| | Sample_contact_email | tfujino@ks.kyorin-u.ac.jp
| | Sample_contact_phone | +81-3-3520-0111
| | Sample_contact_department | Carcinogenesis
| | Sample_contact_institute | The Cancer Institute of Japanese Foundation of Cancer Research
| | Sample_contact_address | 3-10-6 Ariake
| | Sample_contact_city | Koto ward
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309617/suppl/GSM309617.CEL.gz
| | Sample_series_id | GSE12320
| | Sample_data_row_count | 54675
| | |
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GSM468448 | GPL570 |
|
GBS6 cells transfected with negative control siRNA (2nd)
|
GBS6 cells established from a t(6;22) undifferentiated bone sarcoma
|
cell line: GBS6
transfection: control siRNA
protocol: control
|
Gene expression analysis of t(6;22) undifferentiated sarcoma cell line GBS6 transfected with negative control siRNA.
|
| Sample_geo_accession | GSM468448
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | lipofectamine-mediated siRNA transfection.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640 medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNA-Bee (Tel-Test) according to manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labelled.
| | Sample_hyb_protocol | According to Affymetrix's instructions.
| | Sample_scan_protocol | According to Affymetrix's instructions.
| | Sample_data_processing | Affymetrix MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takashi,,Fujino
| | Sample_contact_email | tfujino@ks.kyorin-u.ac.jp
| | Sample_contact_phone | +81-3-3520-0111
| | Sample_contact_department | Carcinogenesis
| | Sample_contact_institute | The Cancer Institute of Japanese Foundation of Cancer Research
| | Sample_contact_address | 3-10-6 Ariake
| | Sample_contact_city | Koto ward
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468448/suppl/GSM468448.CEL.gz
| | Sample_series_id | GSE12320
| | Sample_data_row_count | 54675
| | |
|
GSM468449 | GPL570 |
|
GBS6 cells transfected with negative control siRNA (3rd)
|
GBS6 cells established from a t(6;22) undifferentiated bone sarcoma
|
cell line: GBS6
transfection: control siRNA
protocol: control
|
Gene expression analysis of t(6;22) undifferentiated sarcoma cell line GBS6 transfected with negative control siRNA.
|
| Sample_geo_accession | GSM468449
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | lipofectamine-mediated siRNA transfection.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640 medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNA-Bee (Tel-Test) according to manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labelled.
| | Sample_hyb_protocol | According to Affymetrix's instructions.
| | Sample_scan_protocol | According to Affymetrix's instructions.
| | Sample_data_processing | Affymetrix MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takashi,,Fujino
| | Sample_contact_email | tfujino@ks.kyorin-u.ac.jp
| | Sample_contact_phone | +81-3-3520-0111
| | Sample_contact_department | Carcinogenesis
| | Sample_contact_institute | The Cancer Institute of Japanese Foundation of Cancer Research
| | Sample_contact_address | 3-10-6 Ariake
| | Sample_contact_city | Koto ward
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468449/suppl/GSM468449.CEL.gz
| | Sample_series_id | GSE12320
| | Sample_data_row_count | 54675
| | |
|
GSM468450 | GPL570 |
|
GBS6 cells transfected with POU5F1 siRNA-1 (2nd)
|
GBS6 cells established from a t(6;22) undifferentiated bone sarcoma
|
cell line: GBS6
transfection: POU5F1 siRNA-1
protocol: EWS-POU5F1 knockdown
|
Gene expression analysis of t(6;22) undifferentiated sarcoma cell line GBS6 transfected with POU5F1 specific siRNA-1.
|
| Sample_geo_accession | GSM468450
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | lipofectamine-mediated siRNA transfection.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640 medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNA-Bee (Tel-Test) according to manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labelled.
| | Sample_hyb_protocol | According to Affymetrix's instructions.
| | Sample_scan_protocol | According to Affymetrix's instructions.
| | Sample_data_processing | Affymetrix MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takashi,,Fujino
| | Sample_contact_email | tfujino@ks.kyorin-u.ac.jp
| | Sample_contact_phone | +81-3-3520-0111
| | Sample_contact_department | Carcinogenesis
| | Sample_contact_institute | The Cancer Institute of Japanese Foundation of Cancer Research
| | Sample_contact_address | 3-10-6 Ariake
| | Sample_contact_city | Koto ward
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468450/suppl/GSM468450.CEL.gz
| | Sample_series_id | GSE12320
| | Sample_data_row_count | 54675
| | |
|
GSM468451 | GPL570 |
|
GBS6 cells transfected with POU5F1 siRNA-1 (3rd)
|
GBS6 cells established from a t(6;22) undifferentiated bone sarcoma
|
cell line: GBS6
transfection: POU5F1 siRNA-1
protocol: EWS-POU5F1 knockdown
|
Gene expression analysis of t(6;22) undifferentiated sarcoma cell line GBS6 transfected with POU5F1 specific siRNA-1.
|
| Sample_geo_accession | GSM468451
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | lipofectamine-mediated siRNA transfection.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640 medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNA-Bee (Tel-Test) according to manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labelled.
| | Sample_hyb_protocol | According to Affymetrix's instructions.
| | Sample_scan_protocol | According to Affymetrix's instructions.
| | Sample_data_processing | Affymetrix MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takashi,,Fujino
| | Sample_contact_email | tfujino@ks.kyorin-u.ac.jp
| | Sample_contact_phone | +81-3-3520-0111
| | Sample_contact_department | Carcinogenesis
| | Sample_contact_institute | The Cancer Institute of Japanese Foundation of Cancer Research
| | Sample_contact_address | 3-10-6 Ariake
| | Sample_contact_city | Koto ward
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468451/suppl/GSM468451.CEL.gz
| | Sample_series_id | GSE12320
| | Sample_data_row_count | 54675
| | |
|
GSM468452 | GPL570 |
|
GBS6 cells transfected with POU5F1 siRNA-2 (2nd)
|
GBS6 cells established from a t(6;22) undifferentiated bone sarcoma
|
cell line: GBS6
transfection: POU5F1 siRNA-2
protocol: EWS-POU5F1 knockdown
|
Gene expression analysis of t(6;22) undifferentiated sarcoma cell line GBS6 transfected with POU5F1 specific siRNA-2.
|
| Sample_geo_accession | GSM468452
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | lipofectamine-mediated siRNA transfection.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640 medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNA-Bee (Tel-Test) according to manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labelled.
| | Sample_hyb_protocol | According to Affymetrix's instructions.
| | Sample_scan_protocol | According to Affymetrix's instructions.
| | Sample_data_processing | Affymetrix MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takashi,,Fujino
| | Sample_contact_email | tfujino@ks.kyorin-u.ac.jp
| | Sample_contact_phone | +81-3-3520-0111
| | Sample_contact_department | Carcinogenesis
| | Sample_contact_institute | The Cancer Institute of Japanese Foundation of Cancer Research
| | Sample_contact_address | 3-10-6 Ariake
| | Sample_contact_city | Koto ward
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468452/suppl/GSM468452.CEL.gz
| | Sample_series_id | GSE12320
| | Sample_data_row_count | 54675
| | |
|
GSM468453 | GPL570 |
|
GBS6 cells transfected with POU5F1 siRNA-2 (3rd)
|
GBS6 cells established from a t(6;22) undifferentiated bone sarcoma
|
cell line: GBS6
transfection: POU5F1 siRNA-2
protocol: EWS-POU5F1 knockdown
|
Gene expression analysis of t(6;22) undifferentiated sarcoma cell line GBS6 transfected with POU5F1 specific siRNA-2.
|
| Sample_geo_accession | GSM468453
| | Sample_status | Public on Nov 05 2009
| | Sample_submission_date | Nov 05 2009
| | Sample_last_update_date | Dec 23 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | lipofectamine-mediated siRNA transfection.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640 medium.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNA-Bee (Tel-Test) according to manufacturer’s protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labelled.
| | Sample_hyb_protocol | According to Affymetrix's instructions.
| | Sample_scan_protocol | According to Affymetrix's instructions.
| | Sample_data_processing | Affymetrix MAS5.0
| | Sample_platform_id | GPL570
| | Sample_contact_name | Takashi,,Fujino
| | Sample_contact_email | tfujino@ks.kyorin-u.ac.jp
| | Sample_contact_phone | +81-3-3520-0111
| | Sample_contact_department | Carcinogenesis
| | Sample_contact_institute | The Cancer Institute of Japanese Foundation of Cancer Research
| | Sample_contact_address | 3-10-6 Ariake
| | Sample_contact_city | Koto ward
| | Sample_contact_state | Tokyo
| | Sample_contact_zip/postal_code | 135-8550
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM468nnn/GSM468453/suppl/GSM468453.CEL.gz
| | Sample_series_id | GSE12320
| | Sample_data_row_count | 54675
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