Search results for the GEO ID: GSE12333 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM309928 | GPL1261 |
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embryoid body, microspheres, control, 10 days, replicate #1
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embryoid body, microspheres, control, 10 days, replicate #1
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ESCs (D3 line) were maintained in an undifferentiated state on gelatin-coated tissue culture plates in LIF-containing media as described previously. EBs were formed from 2x106 ESCs inoculated in LIF-free media and cultured under rotary conditions. EBs containing microspheres were produced by coating CellTracker Red or RA-loaded microspheres in 0.1% gelatin solution for 3 hours prior to mixing with ESCs in various microsphere to cell ratios and a range of rotary speeds. EB media was exchanged every 1-2 days as needed.
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CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
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Sample_geo_accession | GSM309928
| Sample_status | Public on Aug 04 2009
| Sample_submission_date | Aug 04 2008
| Sample_last_update_date | Aug 06 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from undifferentiated ESCs and EBs using an RNeasy Mini kit (Qiagen Incorporated).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA from three micrograms of total RNA was generated using the One-Cycle Target Labeling and Control Reagents Kit (Affymetrix Inc.)
| Sample_hyb_protocol | and hybridized to the Mouse Genome 430 2.0 Array according to manufacturer’s protocols (Affymetrix Inc.)
| Sample_scan_protocol | scanned according to manufacturer’s protocols (Affymetrix Inc.)
| Sample_data_processing | CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
| Sample_platform_id | GPL1261
| Sample_contact_name | Nathan,J.,Bowen
| Sample_contact_email | nathan.bowen@biology.gatech.edu
| Sample_contact_phone | 404 894 9020
| Sample_contact_fax | 404 894 0519
| Sample_contact_laboratory | Cancer Development and Evolution
| Sample_contact_department | Biology
| Sample_contact_institute | Georgia Institute of Technology
| Sample_contact_address | 315 Ferst Drive, #333
| Sample_contact_city | Atlanta
| Sample_contact_state | GA
| Sample_contact_zip/postal_code | 30332
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309928/suppl/GSM309928.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309928/suppl/GSM309928.CHP.gz
| Sample_series_id | GSE12333
| Sample_data_row_count | 45101
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GSM309929 | GPL1261 |
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embryoid body, microspheres, control, 10 days, replicate #2
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embryoid body, microspheres, control, 10 days, replicate #2
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ESCs (D3 line) were maintained in an undifferentiated state on gelatin-coated tissue culture plates in LIF-containing media as described previously. EBs were formed from 2x106 ESCs inoculated in LIF-free media and cultured under rotary conditions. EBs containing microspheres were produced by coating CellTracker Red or RA-loaded microspheres in 0.1% gelatin solution for 3 hours prior to mixing with ESCs in various microsphere to cell ratios and a range of rotary speeds. EB media was exchanged every 1-2 days as needed.
|
CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
|
Sample_geo_accession | GSM309929
| Sample_status | Public on Aug 04 2009
| Sample_submission_date | Aug 04 2008
| Sample_last_update_date | Aug 06 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from undifferentiated ESCs and EBs using an RNeasy Mini kit (Qiagen Incorporated).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA from three micrograms of total RNA was generated using the One-Cycle Target Labeling and Control Reagents Kit (Affymetrix Inc.)
| Sample_hyb_protocol | and hybridized to the Mouse Genome 430 2.0 Array according to manufacturer’s protocols (Affymetrix Inc.)
| Sample_scan_protocol | scanned according to manufacturer’s protocols (Affymetrix Inc.)
| Sample_data_processing | CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
| Sample_platform_id | GPL1261
| Sample_contact_name | Nathan,J.,Bowen
| Sample_contact_email | nathan.bowen@biology.gatech.edu
| Sample_contact_phone | 404 894 9020
| Sample_contact_fax | 404 894 0519
| Sample_contact_laboratory | Cancer Development and Evolution
| Sample_contact_department | Biology
| Sample_contact_institute | Georgia Institute of Technology
| Sample_contact_address | 315 Ferst Drive, #333
| Sample_contact_city | Atlanta
| Sample_contact_state | GA
| Sample_contact_zip/postal_code | 30332
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309929/suppl/GSM309929.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309929/suppl/GSM309929.CHP.gz
| Sample_series_id | GSE12333
| Sample_data_row_count | 45101
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GSM309930 | GPL1261 |
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embryoid body, microspheres, control, 10 days, replicate #3
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embryoid body, microspheres, control, 10 days, replicate #3
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ESCs (D3 line) were maintained in an undifferentiated state on gelatin-coated tissue culture plates in LIF-containing media as described previously. EBs were formed from 2x106 ESCs inoculated in LIF-free media and cultured under rotary conditions. EBs containing microspheres were produced by coating CellTracker Red or RA-loaded microspheres in 0.1% gelatin solution for 3 hours prior to mixing with ESCs in various microsphere to cell ratios and a range of rotary speeds. EB media was exchanged every 1-2 days as needed.
|
CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
|
Sample_geo_accession | GSM309930
| Sample_status | Public on Aug 04 2009
| Sample_submission_date | Aug 04 2008
| Sample_last_update_date | Aug 06 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from undifferentiated ESCs and EBs using an RNeasy Mini kit (Qiagen Incorporated).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA from three micrograms of total RNA was generated using the One-Cycle Target Labeling and Control Reagents Kit (Affymetrix Inc.)
| Sample_hyb_protocol | and hybridized to the Mouse Genome 430 2.0 Array according to manufacturer’s protocols (Affymetrix Inc.)
| Sample_scan_protocol | scanned according to manufacturer’s protocols (Affymetrix Inc.)
| Sample_data_processing | CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
| Sample_platform_id | GPL1261
| Sample_contact_name | Nathan,J.,Bowen
| Sample_contact_email | nathan.bowen@biology.gatech.edu
| Sample_contact_phone | 404 894 9020
| Sample_contact_fax | 404 894 0519
| Sample_contact_laboratory | Cancer Development and Evolution
| Sample_contact_department | Biology
| Sample_contact_institute | Georgia Institute of Technology
| Sample_contact_address | 315 Ferst Drive, #333
| Sample_contact_city | Atlanta
| Sample_contact_state | GA
| Sample_contact_zip/postal_code | 30332
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309930/suppl/GSM309930.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309930/suppl/GSM309930.CHP.gz
| Sample_series_id | GSE12333
| Sample_data_row_count | 45101
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GSM309931 | GPL1261 |
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embryoid body, microspheres containing Retinoic Acid, 10 days, replicate #1
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embryoid body, microspheres containing Retinoic Acid, 10 days, replicate #1
|
ESCs (D3 line) were maintained in an undifferentiated state on gelatin-coated tissue culture plates in LIF-containing media as described previously. EBs were formed from 2x106 ESCs inoculated in LIF-free media and cultured under rotary conditions. EBs containing microspheres were produced by coating CellTracker Red or RA-loaded microspheres in 0.1% gelatin solution for 3 hours prior to mixing with ESCs in various microsphere to cell ratios and a range of rotary speeds. EB media was exchanged every 1-2 days as needed.
|
CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
|
Sample_geo_accession | GSM309931
| Sample_status | Public on Aug 04 2009
| Sample_submission_date | Aug 04 2008
| Sample_last_update_date | Aug 06 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from undifferentiated ESCs and EBs using an RNeasy Mini kit (Qiagen Incorporated).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA from three micrograms of total RNA was generated using the One-Cycle Target Labeling and Control Reagents Kit (Affymetrix Inc.)
| Sample_hyb_protocol | and hybridized to the Mouse Genome 430 2.0 Array according to manufacturer’s protocols (Affymetrix Inc.)
| Sample_scan_protocol | scanned according to manufacturer’s protocols (Affymetrix Inc.)
| Sample_data_processing | CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
| Sample_platform_id | GPL1261
| Sample_contact_name | Nathan,J.,Bowen
| Sample_contact_email | nathan.bowen@biology.gatech.edu
| Sample_contact_phone | 404 894 9020
| Sample_contact_fax | 404 894 0519
| Sample_contact_laboratory | Cancer Development and Evolution
| Sample_contact_department | Biology
| Sample_contact_institute | Georgia Institute of Technology
| Sample_contact_address | 315 Ferst Drive, #333
| Sample_contact_city | Atlanta
| Sample_contact_state | GA
| Sample_contact_zip/postal_code | 30332
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309931/suppl/GSM309931.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309931/suppl/GSM309931.CHP.gz
| Sample_series_id | GSE12333
| Sample_data_row_count | 45101
| |
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GSM309932 | GPL1261 |
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embryoid body, microspheres containing Retinoic Acid, 10 days, replicate #2
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embryoid body, microspheres containing Retinoic Acid, 10 days, replicate #2
|
ESCs (D3 line) were maintained in an undifferentiated state on gelatin-coated tissue culture plates in LIF-containing media as described previously. EBs were formed from 2x106 ESCs inoculated in LIF-free media and cultured under rotary conditions. EBs containing microspheres were produced by coating CellTracker Red or RA-loaded microspheres in 0.1% gelatin solution for 3 hours prior to mixing with ESCs in various microsphere to cell ratios and a range of rotary speeds. EB media was exchanged every 1-2 days as needed.
|
CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
|
Sample_geo_accession | GSM309932
| Sample_status | Public on Aug 04 2009
| Sample_submission_date | Aug 04 2008
| Sample_last_update_date | Aug 06 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from undifferentiated ESCs and EBs using an RNeasy Mini kit (Qiagen Incorporated).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA from three micrograms of total RNA was generated using the One-Cycle Target Labeling and Control Reagents Kit (Affymetrix Inc.)
| Sample_hyb_protocol | and hybridized to the Mouse Genome 430 2.0 Array according to manufacturer’s protocols (Affymetrix Inc.)
| Sample_scan_protocol | scanned according to manufacturer’s protocols (Affymetrix Inc.)
| Sample_data_processing | CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
| Sample_platform_id | GPL1261
| Sample_contact_name | Nathan,J.,Bowen
| Sample_contact_email | nathan.bowen@biology.gatech.edu
| Sample_contact_phone | 404 894 9020
| Sample_contact_fax | 404 894 0519
| Sample_contact_laboratory | Cancer Development and Evolution
| Sample_contact_department | Biology
| Sample_contact_institute | Georgia Institute of Technology
| Sample_contact_address | 315 Ferst Drive, #333
| Sample_contact_city | Atlanta
| Sample_contact_state | GA
| Sample_contact_zip/postal_code | 30332
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309932/suppl/GSM309932.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309932/suppl/GSM309932.CHP.gz
| Sample_series_id | GSE12333
| Sample_data_row_count | 45101
| |
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GSM309933 | GPL1261 |
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embryoid body, microspheres containing Retinoic Acid, 10 days, replicate #3
|
embryoid body, microspheres containing Retinoic Acid, 10 days, replicate #3
|
ESCs (D3 line) were maintained in an undifferentiated state on gelatin-coated tissue culture plates in LIF-containing media as described previously. EBs were formed from 2x106 ESCs inoculated in LIF-free media and cultured under rotary conditions. EBs containing microspheres were produced by coating CellTracker Red or RA-loaded microspheres in 0.1% gelatin solution for 3 hours prior to mixing with ESCs in various microsphere to cell ratios and a range of rotary speeds. EB media was exchanged every 1-2 days as needed.
|
CEL and CHP files were generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
|
Sample_geo_accession | GSM309933
| Sample_status | Public on Aug 04 2009
| Sample_submission_date | Aug 04 2008
| Sample_last_update_date | Aug 06 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was extracted from undifferentiated ESCs and EBs using an RNeasy Mini kit (Qiagen Incorporated).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Labeled cRNA from three micrograms of total RNA was generated using the One-Cycle Target Labeling and Control Reagents Kit (Affymetrix Inc.)
| Sample_hyb_protocol | and hybridized to the Mouse Genome 430 2.0 Array according to manufacturer’s protocols (Affymetrix Inc.).
| Sample_scan_protocol | scanned according to manufacturer’s protocols (Affymetrix Inc.).
| Sample_data_processing | CEL and CHP files generated by the Affymetrix Gene Chip Operating System (GCOS) default settings.
| Sample_platform_id | GPL1261
| Sample_contact_name | Nathan,J.,Bowen
| Sample_contact_email | nathan.bowen@biology.gatech.edu
| Sample_contact_phone | 404 894 9020
| Sample_contact_fax | 404 894 0519
| Sample_contact_laboratory | Cancer Development and Evolution
| Sample_contact_department | Biology
| Sample_contact_institute | Georgia Institute of Technology
| Sample_contact_address | 315 Ferst Drive, #333
| Sample_contact_city | Atlanta
| Sample_contact_state | GA
| Sample_contact_zip/postal_code | 30332
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309933/suppl/GSM309933.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM309nnn/GSM309933/suppl/GSM309933.CHP.gz
| Sample_series_id | GSE12333
| Sample_data_row_count | 45101
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