Search results for the GEO ID: GSE12446 ![](/q11.jpeg) |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM312508 | GPL570 |
|
Endometrium, postmenopausal, control, 12-2
|
Endometrium from untreated postmenopausal woman
|
Postmenopausal female. Untreated control. nr 12.
Replicate
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Untreated control. nr 12, replicate (control 12 has been arrayed twice).
|
Sample_geo_accession | GSM312508
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312508/suppl/GSM312508.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312508/suppl/GSM312508.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312549 | GPL570 |
|
Endometrium, postmenopausal, control, 2
|
Endometrium from untreated postmenopausal woman
|
Postmenopausal female. Untreated control. nr 2.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Untreated control. nr 2.
|
Sample_geo_accession | GSM312549
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312549/suppl/GSM312549.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312549/suppl/GSM312549.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312551 | GPL570 |
|
Endometrium, postmenopausal, control, 12
|
Endometrium from untreated postmenopausal woman
|
Postmenopausal female. Untreated control. nr 12.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Untreated control. nr 12.
|
Sample_geo_accession | GSM312551
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312551/suppl/GSM312551.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312551/suppl/GSM312551.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312552 | GPL570 |
|
Endometrium, postmenopausal, control, 17
|
Endometrium from untreated postmenopausal woman
|
Postmenopausal female. Untreated control. nr 17.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Untreated control. nr 17.
|
Sample_geo_accession | GSM312552
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312552/suppl/GSM312552.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312552/suppl/GSM312552.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312553 | GPL570 |
|
Endometrium, postmenopausal, control, 21
|
Endometrium from untreated postmenopausal woman
|
Postmenopausal female. Untreated control. nr 21.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Untreated control. nr 21.
|
Sample_geo_accession | GSM312553
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312553/suppl/GSM312553.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312553/suppl/GSM312553.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312554 | GPL570 |
|
Endometrium, postmenopausal, control, 22
|
Endometrium from untreated postmenopausal woman
|
Postmenopausal female. Untreated control. nr 22.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Untreated control. nr 22.
|
Sample_geo_accession | GSM312554
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312554/suppl/GSM312554.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312554/suppl/GSM312554.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312555 | GPL570 |
|
Endometrium, postmenopausal, control, 33
|
Endometrium from untreated postmenopausal woman
|
Postmenopausal female. Untreated control. nr 33.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Untreated control. nr 33.
|
Sample_geo_accession | GSM312555
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312555/suppl/GSM312555.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312555/suppl/GSM312555.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312557 | GPL570 |
|
Endometrium, postmenopausal, control, 37
|
Endometrium from untreated postmenopausal woman
|
Postmenopausal female. Untreated control. nr 37.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Untreated control. nr 37.
|
Sample_geo_accession | GSM312557
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312557/suppl/GSM312557.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312557/suppl/GSM312557.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312559 | GPL570 |
|
Endometrium, postmenopausal, control, 38
|
Endometrium from untreated postmenopausal woman
|
Postmenopausal female. Untreated control. nr 38.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Untreated control. nr 38.
|
Sample_geo_accession | GSM312559
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312559/suppl/GSM312559.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312559/suppl/GSM312559.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312560 | GPL570 |
|
Endometrium, postmenopausal, estradiol, 3
|
Endometrium from estradiol-treated postmenopausal woman
|
Postmenopausal female. Estradiol treated. Patient 3.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol treated. Patient 3.
|
Sample_geo_accession | GSM312560
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312560/suppl/GSM312560.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312560/suppl/GSM312560.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312561 | GPL570 |
|
Endometrium, postmenopausal, estradiol, 8
|
Endometrium from estradiol-treated postmenopausal woman
|
Postmenopausal female. Estradiol treated. Patient 8.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol treated. Patient 8.
|
Sample_geo_accession | GSM312561
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312561/suppl/GSM312561.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312561/suppl/GSM312561.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312563 | GPL570 |
|
Endometrium, postmenopausal, estradiol, 13
|
Endometrium from estradiol-treated postmenopausal woman
|
Postmenopausal female. Estradiol treated. Patient 13.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol treated. Patient 13.
|
Sample_geo_accession | GSM312563
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312563/suppl/GSM312563.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312563/suppl/GSM312563.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312564 | GPL570 |
|
Endometrium, postmenopausal, estradiol, 23
|
Endometrium from estradiol-treated postmenopausal woman
|
Postmenopausal female. Estradiol treated. Patient 23.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol treated. Patient 23.
|
Sample_geo_accession | GSM312564
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312564/suppl/GSM312564.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312564/suppl/GSM312564.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312565 | GPL570 |
|
Endometrium, postmenopausal, estradiol, 24
|
Endometrium from estradiol-treated postmenopausal woman
|
Postmenopausal female. Estradiol treated. Patient 24.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol treated. Patient 24.
|
Sample_geo_accession | GSM312565
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312565/suppl/GSM312565.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312565/suppl/GSM312565.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312566 | GPL570 |
|
Endometrium, postmenopausal, estradiol, 28
|
Endometrium from estradiol-treated postmenopausal woman
|
Postmenopausal female. Estradiol treated. Patient 28.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol treated. Patient 28.
|
Sample_geo_accession | GSM312566
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312566/suppl/GSM312566.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312566/suppl/GSM312566.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312567 | GPL570 |
|
Endometrium, postmenopausal, estradiol, 36
|
Endometrium from estradiol-treated postmenopausal woman
|
Postmenopausal female. Estradiol treated. Patient 36.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol treated. Patient 36.
|
Sample_geo_accession | GSM312567
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312567/suppl/GSM312567.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312567/suppl/GSM312567.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312568 | GPL570 |
|
Endometrium, postmenopausal, estradiol + MPA, 4
|
Endometrium from estradiol- and MPA-treated postmenopausal woman
|
Postmenopausal female. Estradiol + MPA treated. Patient 4.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol + medroxyprogesterone acetate treated. Patient 4.
|
Sample_geo_accession | GSM312568
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312568/suppl/GSM312568.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312568/suppl/GSM312568.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312667 | GPL570 |
|
Endometrium, postmenopausal, estradiol + MPA, 9
|
Endometrium from estradiol- and MPA-treated postmenopausal woman
|
Postmenopausal female. Estradiol + MPA treated. Patient 9.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol + medroxyprogesterone acetate treated. Patient 9.
|
Sample_geo_accession | GSM312667
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312667/suppl/GSM312667.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312667/suppl/GSM312667.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312668 | GPL570 |
|
Endometrium, postmenopausal, estradiol + MPA, 14
|
Endometrium from estradiol- and MPA-treated postmenopausal woman
|
Postmenopausal female. Estradiol + MPA treated. Patient 14.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol + medroxyprogesterone acetate treated. Patient 14.
|
Sample_geo_accession | GSM312668
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312668/suppl/GSM312668.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312668/suppl/GSM312668.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312669 | GPL570 |
|
Endometrium, postmenopausal, estradiol + MPA, 19
|
Endometrium from estradiol- and MPA-treated postmenopausal woman
|
Postmenopausal female. Estradiol + MPA treated. Patient 19.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol + medroxyprogesterone acetate treated. Patient 19.
|
Sample_geo_accession | GSM312669
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312669/suppl/GSM312669.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312669/suppl/GSM312669.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312671 | GPL570 |
|
Endometrium, postmenopausal, estradiol + MPA, 25
|
Endometrium from estradiol- and MPA-treated postmenopausal woman
|
Postmenopausal female. Estradiol + MPA treated. Patient 25.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol + medroxyprogesterone acetate treated. Patient 25.
|
Sample_geo_accession | GSM312671
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312671/suppl/GSM312671.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312671/suppl/GSM312671.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312673 | GPL570 |
|
Endometrium, postmenopausal, estradiol + MPA, 29
|
Endometrium from estradiol- and MPA-treated postmenopausal woman
|
Postmenopausal female. Estradiol + MPA treated. Patient 29.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Estradiol + medroxyprogesterone acetate treated. Patient 29.
|
Sample_geo_accession | GSM312673
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312673/suppl/GSM312673.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312673/suppl/GSM312673.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312675 | GPL570 |
|
Endometrium, postmenopausal, tibolone, 1
|
Endometrium from tibolone-treated postmenopausal woman
|
Postmenopausal female. Tibolone treated. Patient 1.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Tibolone treated. Patient 1.
|
Sample_geo_accession | GSM312675
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312675/suppl/GSM312675.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312675/suppl/GSM312675.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312676 | GPL570 |
|
Endometrium, postmenopausal, tibolone, 6-2
|
Endometrium from tibolone-treated postmenopausal woman
|
Postmenopausal female. Tibolone treated. Patient 6.
Replicate
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Tibolone treated. Patient 6, replicate (patient 6 has been arrayed twice).
|
Sample_geo_accession | GSM312676
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312676/suppl/GSM312676.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312676/suppl/GSM312676.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312677 | GPL570 |
|
Endometrium, postmenopausal, tibolone, 6
|
Endometrium from tibolone-treated postmenopausal woman
|
Postmenopausal female. Tibolone treated. Patient 6.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Tibolone treated. Patient 6.
|
Sample_geo_accession | GSM312677
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312677/suppl/GSM312677.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312677/suppl/GSM312677.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312678 | GPL570 |
|
Endometrium, postmenopausal, tibolone, 11-2
|
Endometrium from tibolone-treated postmenopausal woman
|
Postmenopausal female. Tibolone treated. Patient 11.
Replicate
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Tibolone treated. Patient 11, replicate (patient 11 has been arrayed twice).
|
Sample_geo_accession | GSM312678
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312678/suppl/GSM312678.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312678/suppl/GSM312678.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312679 | GPL570 |
|
Endometrium, postmenopausal, tibolone, 11
|
Endometrium from tibolone-treated postmenopausal woman
|
Postmenopausal female. Tibolone treated. Patient 11.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Tibolone treated. Patient 11.
|
Sample_geo_accession | GSM312679
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312679/suppl/GSM312679.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312679/suppl/GSM312679.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312680 | GPL570 |
|
Endometrium, postmenopausal, tibolone, 16
|
Endometrium from tibolone-treated postmenopausal woman
|
Postmenopausal female. Tibolone treated. Patient 16.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Tibolone treated. Patient 16.
|
Sample_geo_accession | GSM312680
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312680/suppl/GSM312680.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312680/suppl/GSM312680.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312682 | GPL570 |
|
Endometrium, postmenopausal, tibolone, 30
|
Endometrium from tibolone-treated postmenopausal woman
|
Postmenopausal female. Tibolone treated. Patient 30.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Tibolone treated. Patient 30.
|
Sample_geo_accession | GSM312682
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312682/suppl/GSM312682.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312682/suppl/GSM312682.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
GSM312683 | GPL570 |
|
Endometrium, postmenopausal, tibolone, 32
|
Endometrium from tibolone-treated postmenopausal woman
|
Postmenopausal female. Tibolone treated. Patient 32.
|
Gene expression data. Endometrium from postmenopausal female (Klaassens et al., 2006, Hanifi-Moghaddam et al., 2007). Tibolone treated. Patient 32.
|
Sample_geo_accession | GSM312683
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 14 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | Scanning procedures were carried out as described by Affymetrix, Santa Clara.
| Sample_data_processing | The data were analyzed with RMAExpress using Affymetrix default settings and were normalized according to the quantile method (Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003;19:185-93). After normalization, the intensity values below 30 were set at 30.T
| Sample_platform_id | GPL570
| Sample_contact_name | Leen,J,Blok
| Sample_contact_email | l.blok@erasmusmc.nl
| Sample_contact_phone | 31-10-7044111
| Sample_contact_fax | 31-10-7044365
| Sample_contact_laboratory | Gynecologic Oncology
| Sample_contact_department | Obstetrics & Gynecology
| Sample_contact_institute | Erasmus University Medical Center
| Sample_contact_address | Dr Molewaterplein 40
| Sample_contact_city | Rotterdam
| Sample_contact_zip/postal_code | 3000 CA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312683/suppl/GSM312683.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM312nnn/GSM312683/suppl/GSM312683.CHP.gz
| Sample_series_id | GSE12446
| Sample_data_row_count | 54675
| |
|
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Make groups for comparisons ![](/q11.jpeg) |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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