Search results for the GEO ID: GSE12471 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM311206 | GPL201 |
|
SCA1_NS12
|
SCA1, patient 1
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 1
|
Gene expression data
|
Sample_geo_accession | GSM311206
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311206/suppl/GSM311206.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311207 | GPL201 |
|
SBT_NS03
|
SBT, patient 11
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311207
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311207/suppl/GSM311207.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311208 | GPL201 |
|
SBT_NS10
|
SBT, patient 110
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311208
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311208/suppl/GSM311208.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311209 | GPL201 |
|
SCA1_NS04
|
SCA1, patient 132
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 1
|
Gene expression data
|
Sample_geo_accession | GSM311209
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311209/suppl/GSM311209.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311210 | GPL201 |
|
SCA1_NS09
|
SCA1, patient 143
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 1
|
Gene expression data
|
Sample_geo_accession | GSM311210
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311210/suppl/GSM311210.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311211 | GPL201 |
|
SBT_NS16
|
SBT, patient 150
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311211
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311211/suppl/GSM311211.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311212 | GPL201 |
|
SCA3_NS39
|
SCA3, patient 151
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311212
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311212/suppl/GSM311212.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311213 | GPL201 |
|
SCA3_NS11
|
SCA3, patient 154
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311213
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311213/suppl/GSM311213.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311214 | GPL201 |
|
SCA1_NS21
|
SCA1, patient 171
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 1
|
Gene expression data
|
Sample_geo_accession | GSM311214
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311214/suppl/GSM311214.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311215 | GPL201 |
|
SCA3_NS23
|
SCA3, patient 176
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311215
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311215/suppl/GSM311215.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311216 | GPL201 |
|
SCA3_NS32
|
SCA3, patient 179
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311216
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311216/suppl/GSM311216.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311217 | GPL201 |
|
SCA1_NS06
|
SCA1, patient 180
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 1
|
Gene expression data
|
Sample_geo_accession | GSM311217
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311217/suppl/GSM311217.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311218 | GPL201 |
|
SCA1_NS26
|
SCA1, patient 181
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 1
|
Gene expression data
|
Sample_geo_accession | GSM311218
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311218/suppl/GSM311218.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311219 | GPL201 |
|
SCA3_NS15
|
SCA3, patient 187
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311219
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311219/suppl/GSM311219.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311220 | GPL201 |
|
SBT_NS24
|
SBT, patient 195
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311220
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311220/suppl/GSM311220.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311221 | GPL201 |
|
SBT_NS18
|
SBT, patient 2
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311221
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311221/suppl/GSM311221.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311222 | GPL201 |
|
Impl_NS46
|
Implant, patient 206
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Implant
|
Gene expression data
|
Sample_geo_accession | GSM311222
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311222/suppl/GSM311222.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311223 | GPL201 |
|
SBT_NS01
|
SBT, patient 220
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311223
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311223/suppl/GSM311223.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311224 | GPL201 |
|
SCA1_NS38
|
SCA1, patient 221
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 1
|
Gene expression data
|
Sample_geo_accession | GSM311224
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311224/suppl/GSM311224.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311225 | GPL201 |
|
SCA1_NS30
|
SCA1, patient 229
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 1
|
Gene expression data
|
Sample_geo_accession | GSM311225
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311225/suppl/GSM311225.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311226 | GPL201 |
|
SCA3_NS25
|
SCA3, patient 239b
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311226
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311226/suppl/GSM311226.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311227 | GPL201 |
|
SCA3_NS35
|
SCA3, patient 240
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311227
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311227/suppl/GSM311227.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311228 | GPL201 |
|
SCA3_NS49
|
SCA3, patient 241
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311228
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311228/suppl/GSM311228.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311229 | GPL201 |
|
SBT_NS27
|
SBT, patient 242
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311229
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311229/suppl/GSM311229.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311230 | GPL201 |
|
SCA3_NS50
|
SCA3, patient 243
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311230
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311230/suppl/GSM311230.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311231 | GPL201 |
|
SBT_NS28
|
SBT, patient 244
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311231
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311231/suppl/GSM311231.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311232 | GPL201 |
|
SBT_NS34
|
SBT, patient 245
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311232
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311232/suppl/GSM311232.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311233 | GPL201 |
|
SCA1_NS29
|
SCA1, patient 246
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 1
|
Gene expression data
|
Sample_geo_accession | GSM311233
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311233/suppl/GSM311233.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311234 | GPL201 |
|
SCA1_NS43
|
SCA1, patient 249
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 1
|
Gene expression data
|
Sample_geo_accession | GSM311234
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311234/suppl/GSM311234.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311235 | GPL201 |
|
SCA3_NS51
|
SCA3, patient 251
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311235
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311235/suppl/GSM311235.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311236 | GPL201 |
|
SCA3_NS19
|
SCA3, patient 27
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311236
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311236/suppl/GSM311236.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311237 | GPL201 |
|
SCA3_NS07
|
SCA3, patient 40
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311237
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311237/suppl/GSM311237.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311238 | GPL201 |
|
SCA3_NS22
|
SCA3, patient 46
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311238
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311238/suppl/GSM311238.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311239 | GPL201 |
|
MPC_NS17
|
MPC, patient 50
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Micropapillary carcinoma
|
Gene expression data
|
Sample_geo_accession | GSM311239
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311239/suppl/GSM311239.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311240 | GPL201 |
|
SBT_NS33
|
SBT, patient 7
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311240
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311240/suppl/GSM311240.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311241 | GPL201 |
|
SCA3_NS61
|
SCA3, patient 73
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311241
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311241/suppl/GSM311241.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311242 | GPL201 |
|
MPC_NS13
|
MPC, patient 81
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Micropapillary carcinoma
|
Gene expression data
|
Sample_geo_accession | GSM311242
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311242/suppl/GSM311242.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311243 | GPL201 |
|
SBT_NS36
|
SBT, patient 82
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Borderline tumor
|
Gene expression data
|
Sample_geo_accession | GSM311243
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311243/suppl/GSM311243.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
GSM311244 | GPL201 |
|
SCA3_NS31
|
SCA3, patient 91d
|
Gender: Female
Tissue: Serous ovary tumor
Classification: Carcinoma grade 3
|
Gene expression data
|
Sample_geo_accession | GSM311244
| Sample_status | Public on Aug 21 2008
| Sample_submission_date | Aug 11 2008
| Sample_last_update_date | Aug 20 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix focus arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (GCRMA) method.
| Sample_platform_id | GPL201
| Sample_contact_name | Jan,,Oosting
| Sample_contact_phone | +31 71 5266619
| Sample_contact_department | Pathology
| Sample_contact_institute | Leiden University Medical Center
| Sample_contact_address | Albinusdreef 2
| Sample_contact_city | Leiden
| Sample_contact_zip/postal_code | 2333ZA
| Sample_contact_country | Netherlands
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM311nnn/GSM311244/suppl/GSM311244.CEL.gz
| Sample_series_id | GSE12471
| Sample_data_row_count | 8793
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
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