Search results for the GEO ID: GSE12505  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM314209 | GPL1261 |
|
WT-pDC1
|
Wild type mouse pDCs
|
Wild type mouse pDCs
|
WT-pDC1
|
| Sample_geo_accession | GSM314209
| | Sample_status | Public on Oct 02 2008
| | Sample_submission_date | Aug 20 2008
| | Sample_last_update_date | Oct 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Splenocytes from E2-2+/- mice and wild-type littermates were pooled, stained with antibody conjugates, and PDC (CD11b- CD11clow B220+ Bst2+) were flow-sorted directly into Trizol Reagent (Invitrogen).. Total RNA was isolated and quantified using the Quant-IT RNA Assay Kit (Invitrogen), and equal amounts of each RNA sample were used for reverse transcription and two-round linear aRNA amplification.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The aRNA was amplified without labeling in the first round, and then labeled with Biotin-16-UTP/Biotin-11-CTP in the second round. Labeled aRNA was fragmented in RNA Fragmentation Buffer (QIAGEN) prior to hybridization.
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | MAS algorithm: 5.0 ExpressionStat
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Babacar,,Cisse
| | Sample_contact_email | bc2120@columbia.edu
| | Sample_contact_phone | 2123422936
| | Sample_contact_fax | 2123051468
| | Sample_contact_laboratory | Reizis
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | Columbia Uinversity
| | Sample_contact_address | West 168th St HHSC 609
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314209/suppl/GSM314209.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314209/suppl/GSM314209.CHP.gz
| | Sample_series_id | GSE12505
| | Sample_series_id | GSE12507
| | Sample_data_row_count | 45101
| | |
|
GSM314210 | GPL1261 |
|
WT-pDC2
|
Wild type mouse pDCs
|
Wild type mouse pDCs
|
WT-pDC2
|
| Sample_geo_accession | GSM314210
| | Sample_status | Public on Oct 02 2008
| | Sample_submission_date | Aug 20 2008
| | Sample_last_update_date | Apr 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Splenocytes from E2-2+/- mice and wild-type littermates were pooled, stained with antibody conjugates, and PDC (CD11b- CD11clow B220+ Bst2+) were flow-sorted directly into Trizol Reagent (Invitrogen).. Total RNA was isolated and quantified using the Quant-IT RNA Assay Kit (Invitrogen), and equal amounts of each RNA sample were used for reverse transcription and two-round linear aRNA amplification.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The aRNA was amplified without labeling in the first round, and then labeled with Biotin-16-UTP/Biotin-11-CTP in the second round. Labeled aRNA was fragmented in RNA Fragmentation Buffer (QIAGEN) prior to hybridization.
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | MAS algorithm: 5.0 ExpressionStat
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Babacar,,Cisse
| | Sample_contact_email | bc2120@columbia.edu
| | Sample_contact_phone | 2123422936
| | Sample_contact_fax | 2123051468
| | Sample_contact_laboratory | Reizis
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | Columbia Uinversity
| | Sample_contact_address | West 168th St HHSC 609
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314210/suppl/GSM314210.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314210/suppl/GSM314210.CHP.gz
| | Sample_relation | Reanalyzed by: GSE45704
| | Sample_series_id | GSE12505
| | Sample_series_id | GSE12507
| | Sample_data_row_count | 45101
| | |
|
GSM314211 | GPL1261 |
|
Het-pDC1
|
Heterozygous mouse pDCs
|
Heterozygous mouse pDCs
|
Het-pDC1
|
| Sample_geo_accession | GSM314211
| | Sample_status | Public on Oct 02 2008
| | Sample_submission_date | Aug 20 2008
| | Sample_last_update_date | Oct 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Splenocytes from E2-2+/- mice and wild-type littermates were pooled, stained with antibody conjugates, and PDC (CD11b- CD11clow B220+ Bst2+) were flow-sorted directly into Trizol Reagent (Invitrogen).. Total RNA was isolated and quantified using the Quant-IT RNA Assay Kit (Invitrogen), and equal amounts of each RNA sample were used for reverse transcription and two-round linear aRNA amplification.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The aRNA was amplified without labeling in the first round, and then labeled with Biotin-16-UTP/Biotin-11-CTP in the second round. Labeled aRNA was fragmented in RNA Fragmentation Buffer (QIAGEN) prior to hybridization.
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | MAS algorithm: 5.0 ExpressionStat
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Babacar,,Cisse
| | Sample_contact_email | bc2120@columbia.edu
| | Sample_contact_phone | 2123422936
| | Sample_contact_fax | 2123051468
| | Sample_contact_laboratory | Reizis
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | Columbia Uinversity
| | Sample_contact_address | West 168th St HHSC 609
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314211/suppl/GSM314211.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314211/suppl/GSM314211.CHP.gz
| | Sample_series_id | GSE12505
| | Sample_series_id | GSE12507
| | Sample_data_row_count | 45101
| | |
|
GSM314212 | GPL1261 |
|
Het-pDC2
|
Heterozygous mouse pDCs
|
Heterozygous mouse pDCs
|
Het-pDC2
|
| Sample_geo_accession | GSM314212
| | Sample_status | Public on Oct 02 2008
| | Sample_submission_date | Aug 20 2008
| | Sample_last_update_date | Oct 02 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Splenocytes from E2-2+/- mice and wild-type littermates were pooled, stained with antibody conjugates, and PDC (CD11b- CD11clow B220+ Bst2+) were flow-sorted directly into Trizol Reagent (Invitrogen).. Total RNA was isolated and quantified using the Quant-IT RNA Assay Kit (Invitrogen), and equal amounts of each RNA sample were used for reverse transcription and two-round linear aRNA amplification.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The aRNA was amplified without labeling in the first round, and then labeled with Biotin-16-UTP/Biotin-11-CTP in the second round. Labeled aRNA was fragmented in RNA Fragmentation Buffer (QIAGEN) prior to hybridization.
| | Sample_hyb_protocol | Affymetrix protocol
| | Sample_scan_protocol | Affymetrix protocol
| | Sample_data_processing | MAS algorithm: 5.0 ExpressionStat
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Babacar,,Cisse
| | Sample_contact_email | bc2120@columbia.edu
| | Sample_contact_phone | 2123422936
| | Sample_contact_fax | 2123051468
| | Sample_contact_laboratory | Reizis
| | Sample_contact_department | Microbiology
| | Sample_contact_institute | Columbia Uinversity
| | Sample_contact_address | West 168th St HHSC 609
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314212/suppl/GSM314212.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314212/suppl/GSM314212.CHP.gz
| | Sample_series_id | GSE12505
| | Sample_series_id | GSE12507
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
