Search results for the GEO ID: GSE12526 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM314819 | GPL201 |
|
baseline_cephgp_GM06985_rep1
|
Lymphoblastoid cell lines derived from GM06985
|
coriell cell line repository identifier: GM06985
|
Gene expression data at baseline from lymphoblastoid cells of individual GM06985.
|
Sample_geo_accession | GSM314819
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM06985&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314819/suppl/GSM314819.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314820 | GPL201 |
|
baseline_cephgp_GM06985_rep2
|
Lymphoblastoid cell lines derived from GM06985
|
coriell cell line repository identifier: GM06985
|
Gene expression data at baseline from lymphoblastoid cells of individual GM06985.
|
Sample_geo_accession | GSM314820
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM06985&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314820/suppl/GSM314820.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314821 | GPL201 |
|
baseline_cephgp_GM06986_rep1
|
Lymphoblastoid cell lines derived from GM06986
|
coriell cell line repository identifier: GM06986
|
Gene expression data at baseline from lymphoblastoid cells of individual GM06986.
|
Sample_geo_accession | GSM314821
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM06986&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314821/suppl/GSM314821.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314822 | GPL201 |
|
baseline_cephgp_GM06993_rep1
|
Lymphoblastoid cell lines derived from GM06993
|
coriell cell line repository identifier: GM06993
|
Gene expression data at baseline from lymphoblastoid cells of individual GM06993.
|
Sample_geo_accession | GSM314822
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM06993&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314822/suppl/GSM314822.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314823 | GPL201 |
|
baseline_cephgp_GM06993_rep2
|
Lymphoblastoid cell lines derived from GM06993
|
coriell cell line repository identifier: GM06993
|
Gene expression data at baseline from lymphoblastoid cells of individual GM06993.
|
Sample_geo_accession | GSM314823
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM06993&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314823/suppl/GSM314823.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314824 | GPL201 |
|
baseline_cephgp_GM06994_rep1
|
Lymphoblastoid cell lines derived from GM06994
|
coriell cell line repository identifier: GM06994
|
Gene expression data at baseline from lymphoblastoid cells of individual GM06994.
|
Sample_geo_accession | GSM314824
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM06994&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314824/suppl/GSM314824.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314825 | GPL201 |
|
baseline_cephgp_GM06994_rep2
|
Lymphoblastoid cell lines derived from GM06994
|
coriell cell line repository identifier: GM06994
|
Gene expression data at baseline from lymphoblastoid cells of individual GM06994.
|
Sample_geo_accession | GSM314825
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM06994&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314825/suppl/GSM314825.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314826 | GPL201 |
|
baseline_cephgp_GM07000_rep1
|
Lymphoblastoid cell lines derived from GM07000
|
coriell cell line repository identifier: GM07000
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07000.
|
Sample_geo_accession | GSM314826
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07000&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314826/suppl/GSM314826.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314827 | GPL201 |
|
baseline_cephgp_GM07000_rep2
|
Lymphoblastoid cell lines derived from GM07000
|
coriell cell line repository identifier: GM07000
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07000.
|
Sample_geo_accession | GSM314827
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07000&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314827/suppl/GSM314827.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314828 | GPL201 |
|
baseline_cephgp_GM07002_rep1
|
Lymphoblastoid cell lines derived from GM07002
|
coriell cell line repository identifier: GM07002
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07002.
|
Sample_geo_accession | GSM314828
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07002&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314828/suppl/GSM314828.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314829 | GPL201 |
|
baseline_cephgp_GM07002_rep2
|
Lymphoblastoid cell lines derived from GM07002
|
coriell cell line repository identifier: GM07002
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07002.
|
Sample_geo_accession | GSM314829
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07002&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314829/suppl/GSM314829.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314830 | GPL201 |
|
baseline_cephgp_GM07016_rep1
|
Lymphoblastoid cell lines derived from GM07016
|
coriell cell line repository identifier: GM07016
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07016.
|
Sample_geo_accession | GSM314830
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07016&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314830/suppl/GSM314830.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314831 | GPL201 |
|
baseline_cephgp_GM07017_rep1
|
Lymphoblastoid cell lines derived from GM07017
|
coriell cell line repository identifier: GM07017
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07017.
|
Sample_geo_accession | GSM314831
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07017&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314831/suppl/GSM314831.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314832 | GPL201 |
|
baseline_cephgp_GM07017_rep2
|
Lymphoblastoid cell lines derived from GM07017
|
coriell cell line repository identifier: GM07017
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07017.
|
Sample_geo_accession | GSM314832
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07017&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314832/suppl/GSM314832.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314833 | GPL201 |
|
baseline_cephgp_GM07022_rep1
|
Lymphoblastoid cell lines derived from GM07022
|
coriell cell line repository identifier: GM07022
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07022.
|
Sample_geo_accession | GSM314833
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07022&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314833/suppl/GSM314833.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314834 | GPL201 |
|
baseline_cephgp_GM07022_rep2
|
Lymphoblastoid cell lines derived from GM07022
|
coriell cell line repository identifier: GM07022
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07022.
|
Sample_geo_accession | GSM314834
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07022&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314834/suppl/GSM314834.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314835 | GPL201 |
|
baseline_cephgp_GM07031_rep1
|
Lymphoblastoid cell lines derived from GM07031
|
coriell cell line repository identifier: GM07031
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07031.
|
Sample_geo_accession | GSM314835
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07031&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314835/suppl/GSM314835.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314836 | GPL201 |
|
baseline_cephgp_GM07031_rep2
|
Lymphoblastoid cell lines derived from GM07031
|
coriell cell line repository identifier: GM07031
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07031.
|
Sample_geo_accession | GSM314836
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07031&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314836/suppl/GSM314836.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314837 | GPL201 |
|
baseline_cephgp_GM07034_rep1
|
Lymphoblastoid cell lines derived from GM07034
|
coriell cell line repository identifier: GM07034
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07034.
|
Sample_geo_accession | GSM314837
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07034&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314837/suppl/GSM314837.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314838 | GPL201 |
|
baseline_cephgp_GM07034_rep2
|
Lymphoblastoid cell lines derived from GM07034
|
coriell cell line repository identifier: GM07034
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07034.
|
Sample_geo_accession | GSM314838
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07034&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314838/suppl/GSM314838.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314839 | GPL201 |
|
baseline_cephgp_GM07045_rep1
|
Lymphoblastoid cell lines derived from GM07045
|
coriell cell line repository identifier: GM07045
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07045.
|
Sample_geo_accession | GSM314839
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07045&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314839/suppl/GSM314839.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314840 | GPL201 |
|
baseline_cephgp_GM07049_rep1
|
Lymphoblastoid cell lines derived from GM07049
|
coriell cell line repository identifier: GM07049
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07049.
|
Sample_geo_accession | GSM314840
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07049&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314840/suppl/GSM314840.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314841 | GPL201 |
|
baseline_cephgp_GM07049_rep2
|
Lymphoblastoid cell lines derived from GM07049
|
coriell cell line repository identifier: GM07049
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07049.
|
Sample_geo_accession | GSM314841
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07049&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314841/suppl/GSM314841.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314842 | GPL201 |
|
baseline_cephgp_GM07050_rep1
|
Lymphoblastoid cell lines derived from GM07050
|
coriell cell line repository identifier: GM07050
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07050.
|
Sample_geo_accession | GSM314842
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07050&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314842/suppl/GSM314842.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314843 | GPL201 |
|
baseline_cephgp_GM07051_rep1
|
Lymphoblastoid cell lines derived from GM07051
|
coriell cell line repository identifier: GM07051
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07051.
|
Sample_geo_accession | GSM314843
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07051&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314843/suppl/GSM314843.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314844 | GPL201 |
|
baseline_cephgp_GM07051_rep2
|
Lymphoblastoid cell lines derived from GM07051
|
coriell cell line repository identifier: GM07051
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07051.
|
Sample_geo_accession | GSM314844
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07051&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314844/suppl/GSM314844.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314845 | GPL201 |
|
baseline_cephgp_GM07055_rep1
|
Lymphoblastoid cell lines derived from GM07055
|
coriell cell line repository identifier: GM07055
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07055.
|
Sample_geo_accession | GSM314845
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07055&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314845/suppl/GSM314845.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314846 | GPL201 |
|
baseline_cephgp_GM07055_rep2
|
Lymphoblastoid cell lines derived from GM07055
|
coriell cell line repository identifier: GM07055
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07055.
|
Sample_geo_accession | GSM314846
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07055&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314846/suppl/GSM314846.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314847 | GPL201 |
|
baseline_cephgp_GM07056_rep1
|
Lymphoblastoid cell lines derived from GM07056
|
coriell cell line repository identifier: GM07056
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07056.
|
Sample_geo_accession | GSM314847
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07056&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314847/suppl/GSM314847.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314848 | GPL201 |
|
baseline_cephgp_GM07056_rep2
|
Lymphoblastoid cell lines derived from GM07056
|
coriell cell line repository identifier: GM07056
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07056.
|
Sample_geo_accession | GSM314848
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07056&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314848/suppl/GSM314848.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314849 | GPL201 |
|
baseline_cephgp_GM07340_rep1
|
Lymphoblastoid cell lines derived from GM07340
|
coriell cell line repository identifier: GM07340
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07340.
|
Sample_geo_accession | GSM314849
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07340&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314849/suppl/GSM314849.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314850 | GPL201 |
|
baseline_cephgp_GM07341_rep1
|
Lymphoblastoid cell lines derived from GM07341
|
coriell cell line repository identifier: GM07341
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07341.
|
Sample_geo_accession | GSM314850
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07341&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314850/suppl/GSM314850.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314851 | GPL201 |
|
baseline_cephgp_GM07341_rep2
|
Lymphoblastoid cell lines derived from GM07341
|
coriell cell line repository identifier: GM07341
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07341.
|
Sample_geo_accession | GSM314851
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07341&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314851/suppl/GSM314851.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314852 | GPL201 |
|
baseline_cephgp_GM07345_rep1
|
Lymphoblastoid cell lines derived from GM07345
|
coriell cell line repository identifier: GM07345
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07345.
|
Sample_geo_accession | GSM314852
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07345&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314852/suppl/GSM314852.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314853 | GPL201 |
|
baseline_cephgp_GM07345_rep2
|
Lymphoblastoid cell lines derived from GM07345
|
coriell cell line repository identifier: GM07345
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07345.
|
Sample_geo_accession | GSM314853
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07345&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314853/suppl/GSM314853.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314854 | GPL201 |
|
baseline_cephgp_GM07346_rep1
|
Lymphoblastoid cell lines derived from GM07346
|
coriell cell line repository identifier: GM07346
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07346.
|
Sample_geo_accession | GSM314854
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07346&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314854/suppl/GSM314854.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314855 | GPL201 |
|
baseline_cephgp_GM07346_rep2
|
Lymphoblastoid cell lines derived from GM07346
|
coriell cell line repository identifier: GM07346
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07346.
|
Sample_geo_accession | GSM314855
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07346&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314855/suppl/GSM314855.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314856 | GPL201 |
|
baseline_cephgp_GM07347_rep1
|
Lymphoblastoid cell lines derived from GM07347
|
coriell cell line repository identifier: GM07347
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07347.
|
Sample_geo_accession | GSM314856
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07347&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314856/suppl/GSM314856.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314857 | GPL201 |
|
baseline_cephgp_GM07347_rep2
|
Lymphoblastoid cell lines derived from GM07347
|
coriell cell line repository identifier: GM07347
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07347.
|
Sample_geo_accession | GSM314857
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07347&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314857/suppl/GSM314857.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314858 | GPL201 |
|
baseline_cephgp_GM07357_rep1
|
Lymphoblastoid cell lines derived from GM07357
|
coriell cell line repository identifier: GM07357
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07357.
|
Sample_geo_accession | GSM314858
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07357&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314858/suppl/GSM314858.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314859 | GPL201 |
|
baseline_cephgp_GM07357_rep2
|
Lymphoblastoid cell lines derived from GM07357
|
coriell cell line repository identifier: GM07357
|
Gene expression data at baseline from lymphoblastoid cells of individual GM07357.
|
Sample_geo_accession | GSM314859
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07357&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314859/suppl/GSM314859.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314860 | GPL201 |
|
baseline_cephgp_GM11829_rep1
|
Lymphoblastoid cell lines derived from GM11829
|
coriell cell line repository identifier: GM11829
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11829.
|
Sample_geo_accession | GSM314860
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11829&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314860/suppl/GSM314860.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314861 | GPL201 |
|
baseline_cephgp_GM11830_rep1
|
Lymphoblastoid cell lines derived from GM11830
|
coriell cell line repository identifier: GM11830
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11830.
|
Sample_geo_accession | GSM314861
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11830&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314861/suppl/GSM314861.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314862 | GPL201 |
|
baseline_cephgp_GM11831_rep1
|
Lymphoblastoid cell lines derived from GM11831
|
coriell cell line repository identifier: GM11831
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11831.
|
Sample_geo_accession | GSM314862
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11831&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314862/suppl/GSM314862.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314863 | GPL201 |
|
baseline_cephgp_GM11832_rep1
|
Lymphoblastoid cell lines derived from GM11832
|
coriell cell line repository identifier: GM11832
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11832.
|
Sample_geo_accession | GSM314863
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11832&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314863/suppl/GSM314863.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314864 | GPL201 |
|
baseline_cephgp_GM11839_rep1
|
Lymphoblastoid cell lines derived from GM11839
|
coriell cell line repository identifier: GM11839
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11839.
|
Sample_geo_accession | GSM314864
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11839&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314864/suppl/GSM314864.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314865 | GPL201 |
|
baseline_cephgp_GM11840_rep1
|
Lymphoblastoid cell lines derived from GM11840
|
coriell cell line repository identifier: GM11840
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11840.
|
Sample_geo_accession | GSM314865
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11840&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314865/suppl/GSM314865.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314866 | GPL201 |
|
baseline_cephgp_GM11879_rep1
|
Lymphoblastoid cell lines derived from GM11879
|
coriell cell line repository identifier: GM11879
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11879.
|
Sample_geo_accession | GSM314866
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11879&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314866/suppl/GSM314866.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314867 | GPL201 |
|
baseline_cephgp_GM11879_rep2
|
Lymphoblastoid cell lines derived from GM11879
|
coriell cell line repository identifier: GM11879
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11879.
|
Sample_geo_accession | GSM314867
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11879&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314867/suppl/GSM314867.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314868 | GPL201 |
|
baseline_cephgp_GM11880_rep1
|
Lymphoblastoid cell lines derived from GM11880
|
coriell cell line repository identifier: GM11880
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11880.
|
Sample_geo_accession | GSM314868
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11880&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314868/suppl/GSM314868.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314869 | GPL201 |
|
baseline_cephgp_GM11880_rep2
|
Lymphoblastoid cell lines derived from GM11880
|
coriell cell line repository identifier: GM11880
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11880.
|
Sample_geo_accession | GSM314869
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11880&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314869/suppl/GSM314869.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314870 | GPL201 |
|
baseline_cephgp_GM11881_rep1
|
Lymphoblastoid cell lines derived from GM11881
|
coriell cell line repository identifier: GM11881
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11881.
|
Sample_geo_accession | GSM314870
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11881&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314870/suppl/GSM314870.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314871 | GPL201 |
|
baseline_cephgp_GM11881_rep2
|
Lymphoblastoid cell lines derived from GM11881
|
coriell cell line repository identifier: GM11881
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11881.
|
Sample_geo_accession | GSM314871
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11881&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314871/suppl/GSM314871.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314872 | GPL201 |
|
baseline_cephgp_GM11882_rep1
|
Lymphoblastoid cell lines derived from GM11882
|
coriell cell line repository identifier: GM11882
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11882.
|
Sample_geo_accession | GSM314872
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11882&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314872/suppl/GSM314872.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314873 | GPL201 |
|
baseline_cephgp_GM11882_rep2
|
Lymphoblastoid cell lines derived from GM11882
|
coriell cell line repository identifier: GM11882
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11882.
|
Sample_geo_accession | GSM314873
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11882&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314873/suppl/GSM314873.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314874 | GPL201 |
|
baseline_cephgp_GM11917_rep1
|
Lymphoblastoid cell lines derived from GM11917
|
coriell cell line repository identifier: GM11917
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11917.
|
Sample_geo_accession | GSM314874
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11917&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314874/suppl/GSM314874.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314875 | GPL201 |
|
baseline_cephgp_GM11917_rep2
|
Lymphoblastoid cell lines derived from GM11917
|
coriell cell line repository identifier: GM11917
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11917.
|
Sample_geo_accession | GSM314875
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11917&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314875/suppl/GSM314875.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314876 | GPL201 |
|
baseline_cephgp_GM11918_rep1
|
Lymphoblastoid cell lines derived from GM11918
|
coriell cell line repository identifier: GM11918
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11918.
|
Sample_geo_accession | GSM314876
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11918&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314876/suppl/GSM314876.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314877 | GPL201 |
|
baseline_cephgp_GM11918_rep2
|
Lymphoblastoid cell lines derived from GM11918
|
coriell cell line repository identifier: GM11918
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11918.
|
Sample_geo_accession | GSM314877
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11918&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314877/suppl/GSM314877.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314878 | GPL201 |
|
baseline_cephgp_GM11919_rep1
|
Lymphoblastoid cell lines derived from GM11919
|
coriell cell line repository identifier: GM11919
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11919.
|
Sample_geo_accession | GSM314878
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11919&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314878/suppl/GSM314878.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314879 | GPL201 |
|
baseline_cephgp_GM11919_rep2
|
Lymphoblastoid cell lines derived from GM11919
|
coriell cell line repository identifier: GM11919
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11919.
|
Sample_geo_accession | GSM314879
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11919&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314879/suppl/GSM314879.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314880 | GPL201 |
|
baseline_cephgp_GM11920_rep1
|
Lymphoblastoid cell lines derived from GM11920
|
coriell cell line repository identifier: GM11920
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11920.
|
Sample_geo_accession | GSM314880
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11920&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314880/suppl/GSM314880.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314881 | GPL201 |
|
baseline_cephgp_GM11920_rep2
|
Lymphoblastoid cell lines derived from GM11920
|
coriell cell line repository identifier: GM11920
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11920.
|
Sample_geo_accession | GSM314881
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11920&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314881/suppl/GSM314881.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314882 | GPL201 |
|
baseline_cephgp_GM11930_rep1
|
Lymphoblastoid cell lines derived from GM11930
|
coriell cell line repository identifier: GM11930
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11930.
|
Sample_geo_accession | GSM314882
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11930&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314882/suppl/GSM314882.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314883 | GPL201 |
|
baseline_cephgp_GM11930_rep2
|
Lymphoblastoid cell lines derived from GM11930
|
coriell cell line repository identifier: GM11930
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11930.
|
Sample_geo_accession | GSM314883
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11930&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314883/suppl/GSM314883.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314884 | GPL201 |
|
baseline_cephgp_GM11931_rep1
|
Lymphoblastoid cell lines derived from GM11931
|
coriell cell line repository identifier: GM11931
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11931.
|
Sample_geo_accession | GSM314884
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11931&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314884/suppl/GSM314884.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314885 | GPL201 |
|
baseline_cephgp_GM11931_rep2
|
Lymphoblastoid cell lines derived from GM11931
|
coriell cell line repository identifier: GM11931
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11931.
|
Sample_geo_accession | GSM314885
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11931&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314885/suppl/GSM314885.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314886 | GPL201 |
|
baseline_cephgp_GM11932_rep1
|
Lymphoblastoid cell lines derived from GM11932
|
coriell cell line repository identifier: GM11932
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11932.
|
Sample_geo_accession | GSM314886
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11932&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314886/suppl/GSM314886.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314887 | GPL201 |
|
baseline_cephgp_GM11932_rep2
|
Lymphoblastoid cell lines derived from GM11932
|
coriell cell line repository identifier: GM11932
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11932.
|
Sample_geo_accession | GSM314887
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11932&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314887/suppl/GSM314887.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314888 | GPL201 |
|
baseline_cephgp_GM11933_rep1
|
Lymphoblastoid cell lines derived from GM11933
|
coriell cell line repository identifier: GM11933
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11933.
|
Sample_geo_accession | GSM314888
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11933&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314888/suppl/GSM314888.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314889 | GPL201 |
|
baseline_cephgp_GM11933_rep2
|
Lymphoblastoid cell lines derived from GM11933
|
coriell cell line repository identifier: GM11933
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11933.
|
Sample_geo_accession | GSM314889
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11933&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314889/suppl/GSM314889.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314890 | GPL201 |
|
baseline_cephgp_GM11992_rep1
|
Lymphoblastoid cell lines derived from GM11992
|
coriell cell line repository identifier: GM11992
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11992.
|
Sample_geo_accession | GSM314890
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11992&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314890/suppl/GSM314890.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314891 | GPL201 |
|
baseline_cephgp_GM11992_rep2
|
Lymphoblastoid cell lines derived from GM11992
|
coriell cell line repository identifier: GM11992
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11992.
|
Sample_geo_accession | GSM314891
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11992&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314891/suppl/GSM314891.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314892 | GPL201 |
|
baseline_cephgp_GM11993_rep1
|
Lymphoblastoid cell lines derived from GM11993
|
coriell cell line repository identifier: GM11993
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11993.
|
Sample_geo_accession | GSM314892
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11993&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314892/suppl/GSM314892.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314893 | GPL201 |
|
baseline_cephgp_GM11993_rep2
|
Lymphoblastoid cell lines derived from GM11993
|
coriell cell line repository identifier: GM11993
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11993.
|
Sample_geo_accession | GSM314893
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11993&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314893/suppl/GSM314893.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314894 | GPL201 |
|
baseline_cephgp_GM11994_rep1
|
Lymphoblastoid cell lines derived from GM11994
|
coriell cell line repository identifier: GM11994
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11994.
|
Sample_geo_accession | GSM314894
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11994&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314894/suppl/GSM314894.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314895 | GPL201 |
|
baseline_cephgp_GM11994_rep2
|
Lymphoblastoid cell lines derived from GM11994
|
coriell cell line repository identifier: GM11994
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11994.
|
Sample_geo_accession | GSM314895
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11994&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314895/suppl/GSM314895.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314896 | GPL201 |
|
baseline_cephgp_GM11995_rep1
|
Lymphoblastoid cell lines derived from GM11995
|
coriell cell line repository identifier: GM11995
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11995.
|
Sample_geo_accession | GSM314896
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11995&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314896/suppl/GSM314896.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314897 | GPL201 |
|
baseline_cephgp_GM11995_rep2
|
Lymphoblastoid cell lines derived from GM11995
|
coriell cell line repository identifier: GM11995
|
Gene expression data at baseline from lymphoblastoid cells of individual GM11995.
|
Sample_geo_accession | GSM314897
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM11995&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314897/suppl/GSM314897.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314898 | GPL201 |
|
baseline_cephgp_GM12003_rep1
|
Lymphoblastoid cell lines derived from GM12003
|
coriell cell line repository identifier: GM12003
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12003.
|
Sample_geo_accession | GSM314898
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12003&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314898/suppl/GSM314898.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314899 | GPL201 |
|
baseline_cephgp_GM12004_rep1
|
Lymphoblastoid cell lines derived from GM12004
|
coriell cell line repository identifier: GM12004
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12004.
|
Sample_geo_accession | GSM314899
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12004&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314899/suppl/GSM314899.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314900 | GPL201 |
|
baseline_cephgp_GM12005_rep1
|
Lymphoblastoid cell lines derived from GM12005
|
coriell cell line repository identifier: GM12005
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12005.
|
Sample_geo_accession | GSM314900
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12005&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314900/suppl/GSM314900.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314901 | GPL201 |
|
baseline_cephgp_GM12006_rep1
|
Lymphoblastoid cell lines derived from GM12006
|
coriell cell line repository identifier: GM12006
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12006.
|
Sample_geo_accession | GSM314901
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12006&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314901/suppl/GSM314901.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314902 | GPL201 |
|
baseline_cephgp_GM12043_rep1
|
Lymphoblastoid cell lines derived from GM12043
|
coriell cell line repository identifier: GM12043
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12043.
|
Sample_geo_accession | GSM314902
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12043&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314902/suppl/GSM314902.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314903 | GPL201 |
|
baseline_cephgp_GM12043_rep2
|
Lymphoblastoid cell lines derived from GM12043
|
coriell cell line repository identifier: GM12043
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12043.
|
Sample_geo_accession | GSM314903
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12043&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314903/suppl/GSM314903.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314904 | GPL201 |
|
baseline_cephgp_GM12044_rep1
|
Lymphoblastoid cell lines derived from GM12044
|
coriell cell line repository identifier: GM12044
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12044.
|
Sample_geo_accession | GSM314904
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12044&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314904/suppl/GSM314904.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314905 | GPL201 |
|
baseline_cephgp_GM12044_rep2
|
Lymphoblastoid cell lines derived from GM12044
|
coriell cell line repository identifier: GM12044
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12044.
|
Sample_geo_accession | GSM314905
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12044&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314905/suppl/GSM314905.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314906 | GPL201 |
|
baseline_cephgp_GM12045_rep1
|
Lymphoblastoid cell lines derived from GM12045
|
coriell cell line repository identifier: GM12045
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12045.
|
Sample_geo_accession | GSM314906
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12045&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314906/suppl/GSM314906.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314907 | GPL201 |
|
baseline_cephgp_GM12045_rep2
|
Lymphoblastoid cell lines derived from GM12045
|
coriell cell line repository identifier: GM12045
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12045.
|
Sample_geo_accession | GSM314907
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12045&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314907/suppl/GSM314907.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314908 | GPL201 |
|
baseline_cephgp_GM12046_rep1
|
Lymphoblastoid cell lines derived from GM12046
|
coriell cell line repository identifier: GM12046
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12046.
|
Sample_geo_accession | GSM314908
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12046&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314908/suppl/GSM314908.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314909 | GPL201 |
|
baseline_cephgp_GM12046_rep2
|
Lymphoblastoid cell lines derived from GM12046
|
coriell cell line repository identifier: GM12046
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12046.
|
Sample_geo_accession | GSM314909
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12046&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314909/suppl/GSM314909.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314910 | GPL201 |
|
baseline_cephgp_GM12056_rep1
|
Lymphoblastoid cell lines derived from GM12056
|
coriell cell line repository identifier: GM12056
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12056.
|
Sample_geo_accession | GSM314910
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12056&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314910/suppl/GSM314910.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314911 | GPL201 |
|
baseline_cephgp_GM12057_rep1
|
Lymphoblastoid cell lines derived from GM12057
|
coriell cell line repository identifier: GM12057
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12057.
|
Sample_geo_accession | GSM314911
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12057&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314911/suppl/GSM314911.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314912 | GPL201 |
|
baseline_cephgp_GM12058_rep1
|
Lymphoblastoid cell lines derived from GM12058
|
coriell cell line repository identifier: GM12058
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12058.
|
Sample_geo_accession | GSM314912
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12058&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314912/suppl/GSM314912.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314913 | GPL201 |
|
baseline_cephgp_GM12096_rep1
|
Lymphoblastoid cell lines derived from GM12096
|
coriell cell line repository identifier: GM12096
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12096.
|
Sample_geo_accession | GSM314913
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12096&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314913/suppl/GSM314913.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314914 | GPL201 |
|
baseline_cephgp_GM12097_rep1
|
Lymphoblastoid cell lines derived from GM12097
|
coriell cell line repository identifier: GM12097
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12097.
|
Sample_geo_accession | GSM314914
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12097&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314914/suppl/GSM314914.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314915 | GPL201 |
|
baseline_cephgp_GM12099_rep1
|
Lymphoblastoid cell lines derived from GM12099
|
coriell cell line repository identifier: GM12099
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12099.
|
Sample_geo_accession | GSM314915
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12099&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314915/suppl/GSM314915.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314916 | GPL201 |
|
baseline_cephgp_GM12116_rep1
|
Lymphoblastoid cell lines derived from GM12116
|
coriell cell line repository identifier: GM12116
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12116.
|
Sample_geo_accession | GSM314916
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12116&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314916/suppl/GSM314916.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314917 | GPL201 |
|
baseline_cephgp_GM12117_rep1
|
Lymphoblastoid cell lines derived from GM12117
|
coriell cell line repository identifier: GM12117
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12117.
|
Sample_geo_accession | GSM314917
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12117&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314917/suppl/GSM314917.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314918 | GPL201 |
|
baseline_cephgp_GM12144_rep1
|
Lymphoblastoid cell lines derived from GM12144
|
coriell cell line repository identifier: GM12144
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12144.
|
Sample_geo_accession | GSM314918
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12144&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314918/suppl/GSM314918.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314919 | GPL201 |
|
baseline_cephgp_GM12144_rep2
|
Lymphoblastoid cell lines derived from GM12144
|
coriell cell line repository identifier: GM12144
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12144.
|
Sample_geo_accession | GSM314919
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12144&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314919/suppl/GSM314919.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314920 | GPL201 |
|
baseline_cephgp_GM12145_rep1
|
Lymphoblastoid cell lines derived from GM12145
|
coriell cell line repository identifier: GM12145
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12145.
|
Sample_geo_accession | GSM314920
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12145&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314920/suppl/GSM314920.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314921 | GPL201 |
|
baseline_cephgp_GM12145_rep2
|
Lymphoblastoid cell lines derived from GM12145
|
coriell cell line repository identifier: GM12145
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12145.
|
Sample_geo_accession | GSM314921
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12145&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314921/suppl/GSM314921.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314922 | GPL201 |
|
baseline_cephgp_GM12146_rep1
|
Lymphoblastoid cell lines derived from GM12146
|
coriell cell line repository identifier: GM12146
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12146.
|
Sample_geo_accession | GSM314922
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12146&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314922/suppl/GSM314922.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314923 | GPL201 |
|
baseline_cephgp_GM12146_rep2
|
Lymphoblastoid cell lines derived from GM12146
|
coriell cell line repository identifier: GM12146
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12146.
|
Sample_geo_accession | GSM314923
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12146&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314923/suppl/GSM314923.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314924 | GPL201 |
|
baseline_cephgp_GM12154_rep1
|
Lymphoblastoid cell lines derived from GM12154
|
coriell cell line repository identifier: GM12154
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12154.
|
Sample_geo_accession | GSM314924
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12154&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314924/suppl/GSM314924.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314925 | GPL201 |
|
baseline_cephgp_GM12154_rep2
|
Lymphoblastoid cell lines derived from GM12154
|
coriell cell line repository identifier: GM12154
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12154.
|
Sample_geo_accession | GSM314925
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12154&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314925/suppl/GSM314925.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314926 | GPL201 |
|
baseline_cephgp_GM12155_rep1
|
Lymphoblastoid cell lines derived from GM12155
|
coriell cell line repository identifier: GM12155
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12155.
|
Sample_geo_accession | GSM314926
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12155&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314926/suppl/GSM314926.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314927 | GPL201 |
|
baseline_cephgp_GM12156_rep1
|
Lymphoblastoid cell lines derived from GM12156
|
coriell cell line repository identifier: GM12156
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12156.
|
Sample_geo_accession | GSM314927
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12156&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314927/suppl/GSM314927.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314928 | GPL201 |
|
baseline_cephgp_GM12156_rep2
|
Lymphoblastoid cell lines derived from GM12156
|
coriell cell line repository identifier: GM12156
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12156.
|
Sample_geo_accession | GSM314928
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12156&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314928/suppl/GSM314928.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314929 | GPL201 |
|
baseline_cephgp_GM12234_rep1
|
Lymphoblastoid cell lines derived from GM12234
|
coriell cell line repository identifier: GM12234
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12234.
|
Sample_geo_accession | GSM314929
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12234&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314929/suppl/GSM314929.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314930 | GPL201 |
|
baseline_cephgp_GM12236_rep1
|
Lymphoblastoid cell lines derived from GM12236
|
coriell cell line repository identifier: GM12236
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12236.
|
Sample_geo_accession | GSM314930
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12236&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314930/suppl/GSM314930.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314931 | GPL201 |
|
baseline_cephgp_GM12236_rep2
|
Lymphoblastoid cell lines derived from GM12236
|
coriell cell line repository identifier: GM12236
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12236.
|
Sample_geo_accession | GSM314931
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12236&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314931/suppl/GSM314931.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314932 | GPL201 |
|
baseline_cephgp_GM12239_rep1
|
Lymphoblastoid cell lines derived from GM12239
|
coriell cell line repository identifier: GM12239
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12239.
|
Sample_geo_accession | GSM314932
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12239&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314932/suppl/GSM314932.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314933 | GPL201 |
|
baseline_cephgp_GM12239_rep2
|
Lymphoblastoid cell lines derived from GM12239
|
coriell cell line repository identifier: GM12239
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12239.
|
Sample_geo_accession | GSM314933
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12239&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314933/suppl/GSM314933.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314934 | GPL201 |
|
baseline_cephgp_GM12248_rep1
|
Lymphoblastoid cell lines derived from GM12248
|
coriell cell line repository identifier: GM12248
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12248.
|
Sample_geo_accession | GSM314934
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12248&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314934/suppl/GSM314934.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314935 | GPL201 |
|
baseline_cephgp_GM12248_rep2
|
Lymphoblastoid cell lines derived from GM12248
|
coriell cell line repository identifier: GM12248
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12248.
|
Sample_geo_accession | GSM314935
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12248&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314935/suppl/GSM314935.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314936 | GPL201 |
|
baseline_cephgp_GM12249_rep1
|
Lymphoblastoid cell lines derived from GM12249
|
coriell cell line repository identifier: GM12249
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12249.
|
Sample_geo_accession | GSM314936
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12249&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314936/suppl/GSM314936.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314937 | GPL201 |
|
baseline_cephgp_GM12249_rep2
|
Lymphoblastoid cell lines derived from GM12249
|
coriell cell line repository identifier: GM12249
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12249.
|
Sample_geo_accession | GSM314937
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12249&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314937/suppl/GSM314937.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314938 | GPL201 |
|
baseline_cephgp_GM12250_rep1
|
Lymphoblastoid cell lines derived from GM12250
|
coriell cell line repository identifier: GM12250
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12250.
|
Sample_geo_accession | GSM314938
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12250&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314938/suppl/GSM314938.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314939 | GPL201 |
|
baseline_cephgp_GM12250_rep2
|
Lymphoblastoid cell lines derived from GM12250
|
coriell cell line repository identifier: GM12250
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12250.
|
Sample_geo_accession | GSM314939
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12250&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314939/suppl/GSM314939.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314940 | GPL201 |
|
baseline_cephgp_GM12251_rep1
|
Lymphoblastoid cell lines derived from GM12251
|
coriell cell line repository identifier: GM12251
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12251.
|
Sample_geo_accession | GSM314940
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12251&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314940/suppl/GSM314940.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314941 | GPL201 |
|
baseline_cephgp_GM12251_rep2
|
Lymphoblastoid cell lines derived from GM12251
|
coriell cell line repository identifier: GM12251
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12251.
|
Sample_geo_accession | GSM314941
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12251&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314941/suppl/GSM314941.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314942 | GPL201 |
|
baseline_cephgp_GM12264_rep1
|
Lymphoblastoid cell lines derived from GM12264
|
coriell cell line repository identifier: GM12264
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12264.
|
Sample_geo_accession | GSM314942
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12264&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314942/suppl/GSM314942.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314943 | GPL201 |
|
baseline_cephgp_GM12272_rep1
|
Lymphoblastoid cell lines derived from GM12272
|
coriell cell line repository identifier: GM12272
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12272.
|
Sample_geo_accession | GSM314943
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12272&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314943/suppl/GSM314943.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314944 | GPL201 |
|
baseline_cephgp_GM12272_rep2
|
Lymphoblastoid cell lines derived from GM12272
|
coriell cell line repository identifier: GM12272
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12272.
|
Sample_geo_accession | GSM314944
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12272&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314944/suppl/GSM314944.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314945 | GPL201 |
|
baseline_cephgp_GM12273_rep1
|
Lymphoblastoid cell lines derived from GM12273
|
coriell cell line repository identifier: GM12273
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12273.
|
Sample_geo_accession | GSM314945
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12273&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314945/suppl/GSM314945.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314946 | GPL201 |
|
baseline_cephgp_GM12273_rep2
|
Lymphoblastoid cell lines derived from GM12273
|
coriell cell line repository identifier: GM12273
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12273.
|
Sample_geo_accession | GSM314946
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12273&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314946/suppl/GSM314946.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314947 | GPL201 |
|
baseline_cephgp_GM12274_rep1
|
Lymphoblastoid cell lines derived from GM12274
|
coriell cell line repository identifier: GM12274
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12274.
|
Sample_geo_accession | GSM314947
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12274&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314947/suppl/GSM314947.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314948 | GPL201 |
|
baseline_cephgp_GM12274_rep2
|
Lymphoblastoid cell lines derived from GM12274
|
coriell cell line repository identifier: GM12274
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12274.
|
Sample_geo_accession | GSM314948
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12274&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314948/suppl/GSM314948.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314949 | GPL201 |
|
baseline_cephgp_GM12275_rep1
|
Lymphoblastoid cell lines derived from GM12275
|
coriell cell line repository identifier: GM12275
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12275.
|
Sample_geo_accession | GSM314949
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12275&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314949/suppl/GSM314949.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314950 | GPL201 |
|
baseline_cephgp_GM12275_rep2
|
Lymphoblastoid cell lines derived from GM12275
|
coriell cell line repository identifier: GM12275
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12275.
|
Sample_geo_accession | GSM314950
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12275&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314950/suppl/GSM314950.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314951 | GPL201 |
|
baseline_cephgp_GM12282_rep1
|
Lymphoblastoid cell lines derived from GM12282
|
coriell cell line repository identifier: GM12282
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12282.
|
Sample_geo_accession | GSM314951
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12282&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314951/suppl/GSM314951.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314952 | GPL201 |
|
baseline_cephgp_GM12282_rep2
|
Lymphoblastoid cell lines derived from GM12282
|
coriell cell line repository identifier: GM12282
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12282.
|
Sample_geo_accession | GSM314952
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12282&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314952/suppl/GSM314952.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314953 | GPL201 |
|
baseline_cephgp_GM12283_rep1
|
Lymphoblastoid cell lines derived from GM12283
|
coriell cell line repository identifier: GM12283
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12283.
|
Sample_geo_accession | GSM314953
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12283&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314953/suppl/GSM314953.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314954 | GPL201 |
|
baseline_cephgp_GM12283_rep2
|
Lymphoblastoid cell lines derived from GM12283
|
coriell cell line repository identifier: GM12283
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12283.
|
Sample_geo_accession | GSM314954
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12283&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314954/suppl/GSM314954.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314955 | GPL201 |
|
baseline_cephgp_GM12286_rep1
|
Lymphoblastoid cell lines derived from GM12286
|
coriell cell line repository identifier: GM12286
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12286.
|
Sample_geo_accession | GSM314955
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12286&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314955/suppl/GSM314955.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314956 | GPL201 |
|
baseline_cephgp_GM12286_rep2
|
Lymphoblastoid cell lines derived from GM12286
|
coriell cell line repository identifier: GM12286
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12286.
|
Sample_geo_accession | GSM314956
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12286&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314956/suppl/GSM314956.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314957 | GPL201 |
|
baseline_cephgp_GM12287_rep1
|
Lymphoblastoid cell lines derived from GM12287
|
coriell cell line repository identifier: GM12287
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12287.
|
Sample_geo_accession | GSM314957
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12287&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314957/suppl/GSM314957.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314958 | GPL201 |
|
baseline_cephgp_GM12287_rep2
|
Lymphoblastoid cell lines derived from GM12287
|
coriell cell line repository identifier: GM12287
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12287.
|
Sample_geo_accession | GSM314958
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12287&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314958/suppl/GSM314958.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314959 | GPL201 |
|
baseline_cephgp_GM12340_rep1
|
Lymphoblastoid cell lines derived from GM12340
|
coriell cell line repository identifier: GM12340
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12340.
|
Sample_geo_accession | GSM314959
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12340&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314959/suppl/GSM314959.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314960 | GPL201 |
|
baseline_cephgp_GM12341_rep1
|
Lymphoblastoid cell lines derived from GM12341
|
coriell cell line repository identifier: GM12341
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12341.
|
Sample_geo_accession | GSM314960
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12341&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314960/suppl/GSM314960.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314961 | GPL201 |
|
baseline_cephgp_GM12342_rep1
|
Lymphoblastoid cell lines derived from GM12342
|
coriell cell line repository identifier: GM12342
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12342.
|
Sample_geo_accession | GSM314961
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12342&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314961/suppl/GSM314961.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314962 | GPL201 |
|
baseline_cephgp_GM12347_rep1
|
Lymphoblastoid cell lines derived from GM12347
|
coriell cell line repository identifier: GM12347
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12347.
|
Sample_geo_accession | GSM314962
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12347&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314962/suppl/GSM314962.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314963 | GPL201 |
|
baseline_cephgp_GM12348_rep1
|
Lymphoblastoid cell lines derived from GM12348
|
coriell cell line repository identifier: GM12348
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12348.
|
Sample_geo_accession | GSM314963
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12348&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314963/suppl/GSM314963.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314964 | GPL201 |
|
baseline_cephgp_GM12383_rep1
|
Lymphoblastoid cell lines derived from GM12383
|
coriell cell line repository identifier: GM12383
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12383.
|
Sample_geo_accession | GSM314964
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12383&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314964/suppl/GSM314964.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314965 | GPL201 |
|
baseline_cephgp_GM12398_rep1
|
Lymphoblastoid cell lines derived from GM12398
|
coriell cell line repository identifier: GM12398
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12398.
|
Sample_geo_accession | GSM314965
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12398&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314965/suppl/GSM314965.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314966 | GPL201 |
|
baseline_cephgp_GM12399_rep1
|
Lymphoblastoid cell lines derived from GM12399
|
coriell cell line repository identifier: GM12399
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12399.
|
Sample_geo_accession | GSM314966
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12399&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314966/suppl/GSM314966.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314967 | GPL201 |
|
baseline_cephgp_GM12400_rep1
|
Lymphoblastoid cell lines derived from GM12400
|
coriell cell line repository identifier: GM12400
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12400.
|
Sample_geo_accession | GSM314967
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12400&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314967/suppl/GSM314967.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314969 | GPL201 |
|
baseline_cephgp_GM12466_rep1
|
Lymphoblastoid cell lines derived from GM12466
|
coriell cell line repository identifier: GM12466
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12466.
|
Sample_geo_accession | GSM314969
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12466&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314969/suppl/GSM314969.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314970 | GPL201 |
|
baseline_cephgp_GM12481_rep1
|
Lymphoblastoid cell lines derived from GM12481
|
coriell cell line repository identifier: GM12481
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12481.
|
Sample_geo_accession | GSM314970
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12481&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314970/suppl/GSM314970.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314971 | GPL201 |
|
baseline_cephgp_GM12482_rep1
|
Lymphoblastoid cell lines derived from GM12482
|
coriell cell line repository identifier: GM12482
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12482.
|
Sample_geo_accession | GSM314971
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12482&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314971/suppl/GSM314971.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314972 | GPL201 |
|
baseline_cephgp_GM12489_rep1
|
Lymphoblastoid cell lines derived from GM12489
|
coriell cell line repository identifier: GM12489
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12489.
|
Sample_geo_accession | GSM314972
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12489&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314972/suppl/GSM314972.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314973 | GPL201 |
|
baseline_cephgp_GM12716_rep1
|
Lymphoblastoid cell lines derived from GM12716
|
coriell cell line repository identifier: GM12716
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12716.
|
Sample_geo_accession | GSM314973
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12716&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314973/suppl/GSM314973.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314974 | GPL201 |
|
baseline_cephgp_GM12717_rep1
|
Lymphoblastoid cell lines derived from GM12717
|
coriell cell line repository identifier: GM12717
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12717.
|
Sample_geo_accession | GSM314974
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12717&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314974/suppl/GSM314974.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314975 | GPL201 |
|
baseline_cephgp_GM12718_rep1
|
Lymphoblastoid cell lines derived from GM12718
|
coriell cell line repository identifier: GM12718
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12718.
|
Sample_geo_accession | GSM314975
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12718&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314975/suppl/GSM314975.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314976 | GPL201 |
|
baseline_cephgp_GM12748_rep1
|
Lymphoblastoid cell lines derived from GM12748
|
coriell cell line repository identifier: GM12748
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12748.
|
Sample_geo_accession | GSM314976
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12748&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314976/suppl/GSM314976.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314977 | GPL201 |
|
baseline_cephgp_GM12748_rep2
|
Lymphoblastoid cell lines derived from GM12748
|
coriell cell line repository identifier: GM12748
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12748.
|
Sample_geo_accession | GSM314977
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12748&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314977/suppl/GSM314977.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314978 | GPL201 |
|
baseline_cephgp_GM12749_rep1
|
Lymphoblastoid cell lines derived from GM12749
|
coriell cell line repository identifier: GM12749
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12749.
|
Sample_geo_accession | GSM314978
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12749&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314978/suppl/GSM314978.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314979 | GPL201 |
|
baseline_cephgp_GM12749_rep2
|
Lymphoblastoid cell lines derived from GM12749
|
coriell cell line repository identifier: GM12749
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12749.
|
Sample_geo_accession | GSM314979
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12749&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314979/suppl/GSM314979.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314980 | GPL201 |
|
baseline_cephgp_GM12750_rep1
|
Lymphoblastoid cell lines derived from GM12750
|
coriell cell line repository identifier: GM12750
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12750.
|
Sample_geo_accession | GSM314980
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12750&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314980/suppl/GSM314980.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314981 | GPL201 |
|
baseline_cephgp_GM12750_rep2
|
Lymphoblastoid cell lines derived from GM12750
|
coriell cell line repository identifier: GM12750
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12750.
|
Sample_geo_accession | GSM314981
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12750&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314981/suppl/GSM314981.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314982 | GPL201 |
|
baseline_cephgp_GM12751_rep1
|
Lymphoblastoid cell lines derived from GM12751
|
coriell cell line repository identifier: GM12751
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12751.
|
Sample_geo_accession | GSM314982
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12751&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314982/suppl/GSM314982.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314983 | GPL201 |
|
baseline_cephgp_GM12751_rep2
|
Lymphoblastoid cell lines derived from GM12751
|
coriell cell line repository identifier: GM12751
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12751.
|
Sample_geo_accession | GSM314983
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12751&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314983/suppl/GSM314983.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314984 | GPL201 |
|
baseline_cephgp_GM12760_rep1
|
Lymphoblastoid cell lines derived from GM12760
|
coriell cell line repository identifier: GM12760
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12760.
|
Sample_geo_accession | GSM314984
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12760&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314984/suppl/GSM314984.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314985 | GPL201 |
|
baseline_cephgp_GM12760_rep2
|
Lymphoblastoid cell lines derived from GM12760
|
coriell cell line repository identifier: GM12760
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12760.
|
Sample_geo_accession | GSM314985
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12760&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314985/suppl/GSM314985.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314986 | GPL201 |
|
baseline_cephgp_GM12761_rep1
|
Lymphoblastoid cell lines derived from GM12761
|
coriell cell line repository identifier: GM12761
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12761.
|
Sample_geo_accession | GSM314986
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12761&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314986/suppl/GSM314986.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314987 | GPL201 |
|
baseline_cephgp_GM12761_rep2
|
Lymphoblastoid cell lines derived from GM12761
|
coriell cell line repository identifier: GM12761
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12761.
|
Sample_geo_accession | GSM314987
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12761&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314987/suppl/GSM314987.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314988 | GPL201 |
|
baseline_cephgp_GM12762_rep1
|
Lymphoblastoid cell lines derived from GM12762
|
coriell cell line repository identifier: GM12762
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12762.
|
Sample_geo_accession | GSM314988
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12762&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314988/suppl/GSM314988.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314989 | GPL201 |
|
baseline_cephgp_GM12762_rep2
|
Lymphoblastoid cell lines derived from GM12762
|
coriell cell line repository identifier: GM12762
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12762.
|
Sample_geo_accession | GSM314989
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12762&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314989/suppl/GSM314989.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314990 | GPL201 |
|
baseline_cephgp_GM12763_rep1
|
Lymphoblastoid cell lines derived from GM12763
|
coriell cell line repository identifier: GM12763
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12763.
|
Sample_geo_accession | GSM314990
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12763&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314990/suppl/GSM314990.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314991 | GPL201 |
|
baseline_cephgp_GM12763_rep2
|
Lymphoblastoid cell lines derived from GM12763
|
coriell cell line repository identifier: GM12763
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12763.
|
Sample_geo_accession | GSM314991
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12763&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314991/suppl/GSM314991.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314992 | GPL201 |
|
baseline_cephgp_GM12775_rep1
|
Lymphoblastoid cell lines derived from GM12775
|
coriell cell line repository identifier: GM12775
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12775.
|
Sample_geo_accession | GSM314992
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12775&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314992/suppl/GSM314992.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314993 | GPL201 |
|
baseline_cephgp_GM12775_rep2
|
Lymphoblastoid cell lines derived from GM12775
|
coriell cell line repository identifier: GM12775
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12775.
|
Sample_geo_accession | GSM314993
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12775&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314993/suppl/GSM314993.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314994 | GPL201 |
|
baseline_cephgp_GM12776_rep1
|
Lymphoblastoid cell lines derived from GM12776
|
coriell cell line repository identifier: GM12776
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12776.
|
Sample_geo_accession | GSM314994
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12776&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314994/suppl/GSM314994.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314995 | GPL201 |
|
baseline_cephgp_GM12776_rep2
|
Lymphoblastoid cell lines derived from GM12776
|
coriell cell line repository identifier: GM12776
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12776.
|
Sample_geo_accession | GSM314995
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12776&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314995/suppl/GSM314995.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314996 | GPL201 |
|
baseline_cephgp_GM12777_rep1
|
Lymphoblastoid cell lines derived from GM12777
|
coriell cell line repository identifier: GM12777
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12777.
|
Sample_geo_accession | GSM314996
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12777&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314996/suppl/GSM314996.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314997 | GPL201 |
|
baseline_cephgp_GM12777_rep2
|
Lymphoblastoid cell lines derived from GM12777
|
coriell cell line repository identifier: GM12777
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12777.
|
Sample_geo_accession | GSM314997
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12777&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314997/suppl/GSM314997.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314998 | GPL201 |
|
baseline_cephgp_GM12778_rep1
|
Lymphoblastoid cell lines derived from GM12778
|
coriell cell line repository identifier: GM12778
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12778.
|
Sample_geo_accession | GSM314998
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12778&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314998/suppl/GSM314998.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM314999 | GPL201 |
|
baseline_cephgp_GM12812_rep1
|
Lymphoblastoid cell lines derived from GM12812
|
coriell cell line repository identifier: GM12812
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12812.
|
Sample_geo_accession | GSM314999
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12812&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM314nnn/GSM314999/suppl/GSM314999.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315000 | GPL201 |
|
baseline_cephgp_GM12812_rep2
|
Lymphoblastoid cell lines derived from GM12812
|
coriell cell line repository identifier: GM12812
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12812.
|
Sample_geo_accession | GSM315000
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12812&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315000/suppl/GSM315000.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315001 | GPL201 |
|
baseline_cephgp_GM12813_rep1
|
Lymphoblastoid cell lines derived from GM12813
|
coriell cell line repository identifier: GM12813
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12813.
|
Sample_geo_accession | GSM315001
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12813&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315001/suppl/GSM315001.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315002 | GPL201 |
|
baseline_cephgp_GM12813_rep2
|
Lymphoblastoid cell lines derived from GM12813
|
coriell cell line repository identifier: GM12813
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12813.
|
Sample_geo_accession | GSM315002
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12813&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315002/suppl/GSM315002.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315003 | GPL201 |
|
baseline_cephgp_GM12814_rep1
|
Lymphoblastoid cell lines derived from GM12814
|
coriell cell line repository identifier: GM12814
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12814.
|
Sample_geo_accession | GSM315003
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12814&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315003/suppl/GSM315003.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315004 | GPL201 |
|
baseline_cephgp_GM12814_rep2
|
Lymphoblastoid cell lines derived from GM12814
|
coriell cell line repository identifier: GM12814
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12814.
|
Sample_geo_accession | GSM315004
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12814&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315004/suppl/GSM315004.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315005 | GPL201 |
|
baseline_cephgp_GM12815_rep1
|
Lymphoblastoid cell lines derived from GM12815
|
coriell cell line repository identifier: GM12815
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12815.
|
Sample_geo_accession | GSM315005
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12815&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315005/suppl/GSM315005.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315006 | GPL201 |
|
baseline_cephgp_GM12815_rep2
|
Lymphoblastoid cell lines derived from GM12815
|
coriell cell line repository identifier: GM12815
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12815.
|
Sample_geo_accession | GSM315006
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12815&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315006/suppl/GSM315006.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315007 | GPL201 |
|
baseline_cephgp_GM12827_rep1
|
Lymphoblastoid cell lines derived from GM12827
|
coriell cell line repository identifier: GM12827
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12827.
|
Sample_geo_accession | GSM315007
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12827&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315007/suppl/GSM315007.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315008 | GPL201 |
|
baseline_cephgp_GM12827_rep2
|
Lymphoblastoid cell lines derived from GM12827
|
coriell cell line repository identifier: GM12827
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12827.
|
Sample_geo_accession | GSM315008
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12827&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315008/suppl/GSM315008.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315009 | GPL201 |
|
baseline_cephgp_GM12828_rep1
|
Lymphoblastoid cell lines derived from GM12828
|
coriell cell line repository identifier: GM12828
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12828.
|
Sample_geo_accession | GSM315009
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12828&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315009/suppl/GSM315009.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315010 | GPL201 |
|
baseline_cephgp_GM12828_rep2
|
Lymphoblastoid cell lines derived from GM12828
|
coriell cell line repository identifier: GM12828
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12828.
|
Sample_geo_accession | GSM315010
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12828&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315010/suppl/GSM315010.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315011 | GPL201 |
|
baseline_cephgp_GM12829_rep1
|
Lymphoblastoid cell lines derived from GM12829
|
coriell cell line repository identifier: GM12829
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12829.
|
Sample_geo_accession | GSM315011
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12829&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315011/suppl/GSM315011.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315012 | GPL201 |
|
baseline_cephgp_GM12829_rep2
|
Lymphoblastoid cell lines derived from GM12829
|
coriell cell line repository identifier: GM12829
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12829.
|
Sample_geo_accession | GSM315012
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12829&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315012/suppl/GSM315012.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315013 | GPL201 |
|
baseline_cephgp_GM12830_rep1
|
Lymphoblastoid cell lines derived from GM12830
|
coriell cell line repository identifier: GM12830
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12830.
|
Sample_geo_accession | GSM315013
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12830&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315013/suppl/GSM315013.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315014 | GPL201 |
|
baseline_cephgp_GM12830_rep2
|
Lymphoblastoid cell lines derived from GM12830
|
coriell cell line repository identifier: GM12830
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12830.
|
Sample_geo_accession | GSM315014
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12830&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315014/suppl/GSM315014.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315015 | GPL201 |
|
baseline_cephgp_GM12840_rep1
|
Lymphoblastoid cell lines derived from GM12840
|
coriell cell line repository identifier: GM12840
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12840.
|
Sample_geo_accession | GSM315015
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12840&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315015/suppl/GSM315015.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315016 | GPL201 |
|
baseline_cephgp_GM12840_rep2
|
Lymphoblastoid cell lines derived from GM12840
|
coriell cell line repository identifier: GM12840
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12840.
|
Sample_geo_accession | GSM315016
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12840&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315016/suppl/GSM315016.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315017 | GPL201 |
|
baseline_cephgp_GM12841_rep1
|
Lymphoblastoid cell lines derived from GM12841
|
coriell cell line repository identifier: GM12841
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12841.
|
Sample_geo_accession | GSM315017
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12841&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315017/suppl/GSM315017.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315018 | GPL201 |
|
baseline_cephgp_GM12841_rep2
|
Lymphoblastoid cell lines derived from GM12841
|
coriell cell line repository identifier: GM12841
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12841.
|
Sample_geo_accession | GSM315018
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12841&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315018/suppl/GSM315018.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315019 | GPL201 |
|
baseline_cephgp_GM12842_rep1
|
Lymphoblastoid cell lines derived from GM12842
|
coriell cell line repository identifier: GM12842
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12842.
|
Sample_geo_accession | GSM315019
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12842&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315019/suppl/GSM315019.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315020 | GPL201 |
|
baseline_cephgp_GM12842_rep2
|
Lymphoblastoid cell lines derived from GM12842
|
coriell cell line repository identifier: GM12842
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12842.
|
Sample_geo_accession | GSM315020
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12842&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315020/suppl/GSM315020.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315021 | GPL201 |
|
baseline_cephgp_GM12843_rep1
|
Lymphoblastoid cell lines derived from GM12843
|
coriell cell line repository identifier: GM12843
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12843.
|
Sample_geo_accession | GSM315021
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12843&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315021/suppl/GSM315021.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315022 | GPL201 |
|
baseline_cephgp_GM12843_rep2
|
Lymphoblastoid cell lines derived from GM12843
|
coriell cell line repository identifier: GM12843
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12843.
|
Sample_geo_accession | GSM315022
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12843&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315022/suppl/GSM315022.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315023 | GPL201 |
|
baseline_cephgp_GM12860_rep1
|
Lymphoblastoid cell lines derived from GM12860
|
coriell cell line repository identifier: GM12860
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12860.
|
Sample_geo_accession | GSM315023
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12860&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315023/suppl/GSM315023.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315024 | GPL201 |
|
baseline_cephgp_GM12861_rep1
|
Lymphoblastoid cell lines derived from GM12861
|
coriell cell line repository identifier: GM12861
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12861.
|
Sample_geo_accession | GSM315024
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12861&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315024/suppl/GSM315024.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315025 | GPL201 |
|
baseline_cephgp_GM12862_rep1
|
Lymphoblastoid cell lines derived from GM12862
|
coriell cell line repository identifier: GM12862
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12862.
|
Sample_geo_accession | GSM315025
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12862&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315025/suppl/GSM315025.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315026 | GPL201 |
|
baseline_cephgp_GM12863_rep1
|
Lymphoblastoid cell lines derived from GM12863
|
coriell cell line repository identifier: GM12863
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12863.
|
Sample_geo_accession | GSM315026
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12863&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315026/suppl/GSM315026.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315027 | GPL201 |
|
baseline_cephgp_GM12872_rep1
|
Lymphoblastoid cell lines derived from GM12872
|
coriell cell line repository identifier: GM12872
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12872.
|
Sample_geo_accession | GSM315027
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12872&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315027/suppl/GSM315027.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315028 | GPL201 |
|
baseline_cephgp_GM12872_rep2
|
Lymphoblastoid cell lines derived from GM12872
|
coriell cell line repository identifier: GM12872
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12872.
|
Sample_geo_accession | GSM315028
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12872&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315028/suppl/GSM315028.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315029 | GPL201 |
|
baseline_cephgp_GM12873_rep1
|
Lymphoblastoid cell lines derived from GM12873
|
coriell cell line repository identifier: GM12873
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12873.
|
Sample_geo_accession | GSM315029
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12873&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315029/suppl/GSM315029.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315030 | GPL201 |
|
baseline_cephgp_GM12873_rep2
|
Lymphoblastoid cell lines derived from GM12873
|
coriell cell line repository identifier: GM12873
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12873.
|
Sample_geo_accession | GSM315030
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12873&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315030/suppl/GSM315030.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315031 | GPL201 |
|
baseline_cephgp_GM12874_rep1
|
Lymphoblastoid cell lines derived from GM12874
|
coriell cell line repository identifier: GM12874
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12874.
|
Sample_geo_accession | GSM315031
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12874&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315031/suppl/GSM315031.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315032 | GPL201 |
|
baseline_cephgp_GM12874_rep2
|
Lymphoblastoid cell lines derived from GM12874
|
coriell cell line repository identifier: GM12874
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12874.
|
Sample_geo_accession | GSM315032
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12874&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315032/suppl/GSM315032.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315033 | GPL201 |
|
baseline_cephgp_GM12875_rep1
|
Lymphoblastoid cell lines derived from GM12875
|
coriell cell line repository identifier: GM12875
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12875.
|
Sample_geo_accession | GSM315033
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12875&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315033/suppl/GSM315033.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315034 | GPL201 |
|
baseline_cephgp_GM12875_rep2
|
Lymphoblastoid cell lines derived from GM12875
|
coriell cell line repository identifier: GM12875
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12875.
|
Sample_geo_accession | GSM315034
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12875&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315034/suppl/GSM315034.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315037 | GPL201 |
|
baseline_cephgp_GM12890_rep2
|
Lymphoblastoid cell lines derived from GM12890
|
coriell cell line repository identifier: GM12890
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12890.
|
Sample_geo_accession | GSM315037
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12890&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315037/suppl/GSM315037.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315038 | GPL201 |
|
baseline_cephgp_GM12891_rep1
|
Lymphoblastoid cell lines derived from GM12891
|
coriell cell line repository identifier: GM12891
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12891.
|
Sample_geo_accession | GSM315038
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12891&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315038/suppl/GSM315038.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315039 | GPL201 |
|
baseline_cephgp_GM12892_rep1
|
Lymphoblastoid cell lines derived from GM12892
|
coriell cell line repository identifier: GM12892
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12892.
|
Sample_geo_accession | GSM315039
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12892&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315039/suppl/GSM315039.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315040 | GPL201 |
|
baseline_cephgp_GM12908_rep1
|
Lymphoblastoid cell lines derived from GM12908
|
coriell cell line repository identifier: GM12908
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12908.
|
Sample_geo_accession | GSM315040
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12908&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315040/suppl/GSM315040.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315041 | GPL201 |
|
baseline_cephgp_GM12909_rep1
|
Lymphoblastoid cell lines derived from GM12909
|
coriell cell line repository identifier: GM12909
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12909.
|
Sample_geo_accession | GSM315041
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12909&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315041/suppl/GSM315041.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315042 | GPL201 |
|
baseline_cephgp_GM12910_rep1
|
Lymphoblastoid cell lines derived from GM12910
|
coriell cell line repository identifier: GM12910
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12910.
|
Sample_geo_accession | GSM315042
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12910&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315042/suppl/GSM315042.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315043 | GPL201 |
|
baseline_cephgp_GM12921_rep1
|
Lymphoblastoid cell lines derived from GM12921
|
coriell cell line repository identifier: GM12921
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12921.
|
Sample_geo_accession | GSM315043
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12921&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315043/suppl/GSM315043.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315044 | GPL201 |
|
baseline_cephgp_GM12921_rep2
|
Lymphoblastoid cell lines derived from GM12921
|
coriell cell line repository identifier: GM12921
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12921.
|
Sample_geo_accession | GSM315044
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12921&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315044/suppl/GSM315044.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315045 | GPL201 |
|
baseline_cephgp_GM12922_rep1
|
Lymphoblastoid cell lines derived from GM12922
|
coriell cell line repository identifier: GM12922
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12922.
|
Sample_geo_accession | GSM315045
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12922&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315045/suppl/GSM315045.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315046 | GPL201 |
|
baseline_cephgp_GM12922_rep2
|
Lymphoblastoid cell lines derived from GM12922
|
coriell cell line repository identifier: GM12922
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12922.
|
Sample_geo_accession | GSM315046
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12922&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315046/suppl/GSM315046.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315047 | GPL201 |
|
baseline_cephgp_GM12923_rep1
|
Lymphoblastoid cell lines derived from GM12923
|
coriell cell line repository identifier: GM12923
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12923.
|
Sample_geo_accession | GSM315047
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12923&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315047/suppl/GSM315047.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315048 | GPL201 |
|
baseline_cephgp_GM12923_rep2
|
Lymphoblastoid cell lines derived from GM12923
|
coriell cell line repository identifier: GM12923
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12923.
|
Sample_geo_accession | GSM315048
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12923&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315048/suppl/GSM315048.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315049 | GPL201 |
|
baseline_cephgp_GM12924_rep1
|
Lymphoblastoid cell lines derived from GM12924
|
coriell cell line repository identifier: GM12924
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12924.
|
Sample_geo_accession | GSM315049
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12924&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315049/suppl/GSM315049.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315050 | GPL201 |
|
baseline_cephgp_GM12924_rep2
|
Lymphoblastoid cell lines derived from GM12924
|
coriell cell line repository identifier: GM12924
|
Gene expression data at baseline from lymphoblastoid cells of individual GM12924.
|
Sample_geo_accession | GSM315050
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12924&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315050/suppl/GSM315050.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315051 | GPL201 |
|
baseline_cephgp_GM13042_rep1
|
Lymphoblastoid cell lines derived from GM13042
|
coriell cell line repository identifier: GM13042
|
Gene expression data at baseline from lymphoblastoid cells of individual GM13042.
|
Sample_geo_accession | GSM315051
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13042&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315051/suppl/GSM315051.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315052 | GPL201 |
|
baseline_cephgp_GM13042_rep2
|
Lymphoblastoid cell lines derived from GM13042
|
coriell cell line repository identifier: GM13042
|
Gene expression data at baseline from lymphoblastoid cells of individual GM13042.
|
Sample_geo_accession | GSM315052
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13042&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315052/suppl/GSM315052.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315053 | GPL201 |
|
baseline_cephgp_GM13044_rep1
|
Lymphoblastoid cell lines derived from GM13044
|
coriell cell line repository identifier: GM13044
|
Gene expression data at baseline from lymphoblastoid cells of individual GM13044.
|
Sample_geo_accession | GSM315053
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13044&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315053/suppl/GSM315053.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315054 | GPL201 |
|
baseline_cephgp_GM13044_rep2
|
Lymphoblastoid cell lines derived from GM13044
|
coriell cell line repository identifier: GM13044
|
Gene expression data at baseline from lymphoblastoid cells of individual GM13044.
|
Sample_geo_accession | GSM315054
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13044&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315054/suppl/GSM315054.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315055 | GPL201 |
|
baseline_cephgp_GM13047_rep1
|
Lymphoblastoid cell lines derived from GM13047
|
coriell cell line repository identifier: GM13047
|
Gene expression data at baseline from lymphoblastoid cells of individual GM13047.
|
Sample_geo_accession | GSM315055
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13047&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315055/suppl/GSM315055.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315056 | GPL201 |
|
baseline_cephgp_GM13047_rep2
|
Lymphoblastoid cell lines derived from GM13047
|
coriell cell line repository identifier: GM13047
|
Gene expression data at baseline from lymphoblastoid cells of individual GM13047.
|
Sample_geo_accession | GSM315056
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13047&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315056/suppl/GSM315056.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315057 | GPL201 |
|
baseline_cephgp_GM13051_rep1
|
Lymphoblastoid cell lines derived from GM13051
|
coriell cell line repository identifier: GM13051
|
Gene expression data at baseline from lymphoblastoid cells of individual GM13051.
|
Sample_geo_accession | GSM315057
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13051&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315057/suppl/GSM315057.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315058 | GPL201 |
|
baseline_cephgp_GM13051_rep2
|
Lymphoblastoid cell lines derived from GM13051
|
coriell cell line repository identifier: GM13051
|
Gene expression data at baseline from lymphoblastoid cells of individual GM13051.
|
Sample_geo_accession | GSM315058
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13051&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315058/suppl/GSM315058.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315059 | GPL201 |
|
baseline_cephgp_GM13133_rep1
|
Lymphoblastoid cell lines derived from GM13133
|
coriell cell line repository identifier: GM13133
|
Gene expression data at baseline from lymphoblastoid cells of individual GM13133.
|
Sample_geo_accession | GSM315059
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM13133&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315059/suppl/GSM315059.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315060 | GPL201 |
|
baseline_asn_GM18524_rep1
|
Lymphoblastoid cell lines derived from GM18524
|
coriell cell line repository identifier: GM18524
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18524.
|
Sample_geo_accession | GSM315060
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18524&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315060/suppl/GSM315060.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315061 | GPL201 |
|
baseline_asn_GM18526_rep1
|
Lymphoblastoid cell lines derived from GM18526
|
coriell cell line repository identifier: GM18526
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18526.
|
Sample_geo_accession | GSM315061
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18526&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315061/suppl/GSM315061.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315062 | GPL201 |
|
baseline_asn_GM18529_rep1
|
Lymphoblastoid cell lines derived from GM18529
|
coriell cell line repository identifier: GM18529
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18529.
|
Sample_geo_accession | GSM315062
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18529&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315062/suppl/GSM315062.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315063 | GPL201 |
|
baseline_asn_GM18532_rep1
|
Lymphoblastoid cell lines derived from GM18532
|
coriell cell line repository identifier: GM18532
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18532.
|
Sample_geo_accession | GSM315063
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18532&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315063/suppl/GSM315063.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315064 | GPL201 |
|
baseline_asn_GM18537_rep1
|
Lymphoblastoid cell lines derived from GM18537
|
coriell cell line repository identifier: GM18537
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18537.
|
Sample_geo_accession | GSM315064
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18537&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315064/suppl/GSM315064.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315065 | GPL201 |
|
baseline_asn_GM18540_rep1
|
Lymphoblastoid cell lines derived from GM18540
|
coriell cell line repository identifier: GM18540
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18540.
|
Sample_geo_accession | GSM315065
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18540&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315065/suppl/GSM315065.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315066 | GPL201 |
|
baseline_asn_GM18542_rep1
|
Lymphoblastoid cell lines derived from GM18542
|
coriell cell line repository identifier: GM18542
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18542.
|
Sample_geo_accession | GSM315066
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18542&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315066/suppl/GSM315066.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315067 | GPL201 |
|
baseline_asn_GM18545_rep1
|
Lymphoblastoid cell lines derived from GM18545
|
coriell cell line repository identifier: GM18545
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18545.
|
Sample_geo_accession | GSM315067
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18545&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315067/suppl/GSM315067.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315068 | GPL201 |
|
baseline_asn_GM18547_rep1
|
Lymphoblastoid cell lines derived from GM18547
|
coriell cell line repository identifier: GM18547
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18547.
|
Sample_geo_accession | GSM315068
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18547&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315068/suppl/GSM315068.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315069 | GPL201 |
|
baseline_asn_GM18550_rep1
|
Lymphoblastoid cell lines derived from GM18550
|
coriell cell line repository identifier: GM18550
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18550.
|
Sample_geo_accession | GSM315069
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18550&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315069/suppl/GSM315069.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315070 | GPL201 |
|
baseline_asn_GM18552_rep1
|
Lymphoblastoid cell lines derived from GM18552
|
coriell cell line repository identifier: GM18552
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18552.
|
Sample_geo_accession | GSM315070
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18552&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315070/suppl/GSM315070.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315071 | GPL201 |
|
baseline_asn_GM18555_rep1
|
Lymphoblastoid cell lines derived from GM18555
|
coriell cell line repository identifier: GM18555
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18555.
|
Sample_geo_accession | GSM315071
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18555&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315071/suppl/GSM315071.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315072 | GPL201 |
|
baseline_asn_GM18558_rep1
|
Lymphoblastoid cell lines derived from GM18558
|
coriell cell line repository identifier: GM18558
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18558.
|
Sample_geo_accession | GSM315072
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18558&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315072/suppl/GSM315072.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315073 | GPL201 |
|
baseline_asn_GM18561_rep1
|
Lymphoblastoid cell lines derived from GM18561
|
coriell cell line repository identifier: GM18561
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18561.
|
Sample_geo_accession | GSM315073
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18561&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315073/suppl/GSM315073.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315074 | GPL201 |
|
baseline_asn_GM18562_rep1
|
Lymphoblastoid cell lines derived from GM18562
|
coriell cell line repository identifier: GM18562
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18562.
|
Sample_geo_accession | GSM315074
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18562&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315074/suppl/GSM315074.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315075 | GPL201 |
|
baseline_asn_GM18563_rep1
|
Lymphoblastoid cell lines derived from GM18563
|
coriell cell line repository identifier: GM18563
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18563.
|
Sample_geo_accession | GSM315075
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18563&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315075/suppl/GSM315075.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315076 | GPL201 |
|
baseline_asn_GM18564_rep1
|
Lymphoblastoid cell lines derived from GM18564
|
coriell cell line repository identifier: GM18564
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18564.
|
Sample_geo_accession | GSM315076
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18564&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315076/suppl/GSM315076.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315077 | GPL201 |
|
baseline_asn_GM18566_rep1
|
Lymphoblastoid cell lines derived from GM18566
|
coriell cell line repository identifier: GM18566
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18566.
|
Sample_geo_accession | GSM315077
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18566&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315077/suppl/GSM315077.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315078 | GPL201 |
|
baseline_asn_GM18570_rep1
|
Lymphoblastoid cell lines derived from GM18570
|
coriell cell line repository identifier: GM18570
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18570.
|
Sample_geo_accession | GSM315078
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18570&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315078/suppl/GSM315078.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315079 | GPL201 |
|
baseline_asn_GM18573_rep1
|
Lymphoblastoid cell lines derived from GM18573
|
coriell cell line repository identifier: GM18573
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18573.
|
Sample_geo_accession | GSM315079
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18573&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315079/suppl/GSM315079.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315080 | GPL201 |
|
baseline_asn_GM18576_rep1
|
Lymphoblastoid cell lines derived from GM18576
|
coriell cell line repository identifier: GM18576
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18576.
|
Sample_geo_accession | GSM315080
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18576&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315080/suppl/GSM315080.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315081 | GPL201 |
|
baseline_asn_GM18577_rep1
|
Lymphoblastoid cell lines derived from GM18577
|
coriell cell line repository identifier: GM18577
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18577.
|
Sample_geo_accession | GSM315081
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18577&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315081/suppl/GSM315081.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315082 | GPL201 |
|
baseline_asn_GM18579_rep1
|
Lymphoblastoid cell lines derived from GM18579
|
coriell cell line repository identifier: GM18579
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18579.
|
Sample_geo_accession | GSM315082
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18579&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315082/suppl/GSM315082.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315083 | GPL201 |
|
baseline_asn_GM18582_rep1
|
Lymphoblastoid cell lines derived from GM18582
|
coriell cell line repository identifier: GM18582
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18582.
|
Sample_geo_accession | GSM315083
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18582&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315083/suppl/GSM315083.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315084 | GPL201 |
|
baseline_asn_GM18592_rep1
|
Lymphoblastoid cell lines derived from GM18592
|
coriell cell line repository identifier: GM18592
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18592.
|
Sample_geo_accession | GSM315084
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18592&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315084/suppl/GSM315084.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315085 | GPL201 |
|
baseline_asn_GM18593_rep1
|
Lymphoblastoid cell lines derived from GM18593
|
coriell cell line repository identifier: GM18593
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18593.
|
Sample_geo_accession | GSM315085
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18593&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315085/suppl/GSM315085.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315086 | GPL201 |
|
baseline_asn_GM18594_rep1
|
Lymphoblastoid cell lines derived from GM18594
|
coriell cell line repository identifier: GM18594
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18594.
|
Sample_geo_accession | GSM315086
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18594&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315086/suppl/GSM315086.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315087 | GPL201 |
|
baseline_asn_GM18603_rep1
|
Lymphoblastoid cell lines derived from GM18603
|
coriell cell line repository identifier: GM18603
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18603.
|
Sample_geo_accession | GSM315087
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18603&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315087/suppl/GSM315087.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315088 | GPL201 |
|
baseline_asn_GM18605_rep1
|
Lymphoblastoid cell lines derived from GM18605
|
coriell cell line repository identifier: GM18605
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18605.
|
Sample_geo_accession | GSM315088
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18605&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315088/suppl/GSM315088.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315089 | GPL201 |
|
baseline_asn_GM18608_rep1
|
Lymphoblastoid cell lines derived from GM18608
|
coriell cell line repository identifier: GM18608
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18608.
|
Sample_geo_accession | GSM315089
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18608&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315089/suppl/GSM315089.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315090 | GPL201 |
|
baseline_asn_GM18611_rep1
|
Lymphoblastoid cell lines derived from GM18611
|
coriell cell line repository identifier: GM18611
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18611.
|
Sample_geo_accession | GSM315090
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18611&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315090/suppl/GSM315090.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315091 | GPL201 |
|
baseline_asn_GM18612_rep1
|
Lymphoblastoid cell lines derived from GM18612
|
coriell cell line repository identifier: GM18612
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18612.
|
Sample_geo_accession | GSM315091
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18612&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315091/suppl/GSM315091.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315092 | GPL201 |
|
baseline_asn_GM18620_rep1
|
Lymphoblastoid cell lines derived from GM18620
|
coriell cell line repository identifier: GM18620
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18620.
|
Sample_geo_accession | GSM315092
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18620&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315092/suppl/GSM315092.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315093 | GPL201 |
|
baseline_asn_GM18621_rep1
|
Lymphoblastoid cell lines derived from GM18621
|
coriell cell line repository identifier: GM18621
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18621.
|
Sample_geo_accession | GSM315093
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18621&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315093/suppl/GSM315093.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315094 | GPL201 |
|
baseline_asn_GM18622_rep1
|
Lymphoblastoid cell lines derived from GM18622
|
coriell cell line repository identifier: GM18622
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18622.
|
Sample_geo_accession | GSM315094
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18622&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315094/suppl/GSM315094.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315095 | GPL201 |
|
baseline_asn_GM18623_rep1
|
Lymphoblastoid cell lines derived from GM18623
|
coriell cell line repository identifier: GM18623
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18623.
|
Sample_geo_accession | GSM315095
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18623&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315095/suppl/GSM315095.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315096 | GPL201 |
|
baseline_asn_GM18624_rep1
|
Lymphoblastoid cell lines derived from GM18624
|
coriell cell line repository identifier: GM18624
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18624.
|
Sample_geo_accession | GSM315096
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18624&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315096/suppl/GSM315096.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315097 | GPL201 |
|
baseline_asn_GM18632_rep1
|
Lymphoblastoid cell lines derived from GM18632
|
coriell cell line repository identifier: GM18632
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18632.
|
Sample_geo_accession | GSM315097
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18632&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315097/suppl/GSM315097.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315098 | GPL201 |
|
baseline_asn_GM18635_rep1
|
Lymphoblastoid cell lines derived from GM18635
|
coriell cell line repository identifier: GM18635
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18635.
|
Sample_geo_accession | GSM315098
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18635&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315098/suppl/GSM315098.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315099 | GPL201 |
|
baseline_asn_GM18636_rep1
|
Lymphoblastoid cell lines derived from GM18636
|
coriell cell line repository identifier: GM18636
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18636.
|
Sample_geo_accession | GSM315099
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18636&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315099/suppl/GSM315099.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315100 | GPL201 |
|
baseline_asn_GM18637_rep1
|
Lymphoblastoid cell lines derived from GM18637
|
coriell cell line repository identifier: GM18637
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18637.
|
Sample_geo_accession | GSM315100
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18637&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315100/suppl/GSM315100.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315101 | GPL201 |
|
baseline_asn_GM18940_rep1
|
Lymphoblastoid cell lines derived from GM18940
|
coriell cell line repository identifier: GM18940
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18940.
|
Sample_geo_accession | GSM315101
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18940&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315101/suppl/GSM315101.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315102 | GPL201 |
|
baseline_asn_GM18942_rep1
|
Lymphoblastoid cell lines derived from GM18942
|
coriell cell line repository identifier: GM18942
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18942.
|
Sample_geo_accession | GSM315102
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18942&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315102/suppl/GSM315102.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315103 | GPL201 |
|
baseline_asn_GM18943_rep1
|
Lymphoblastoid cell lines derived from GM18943
|
coriell cell line repository identifier: GM18943
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18943.
|
Sample_geo_accession | GSM315103
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18943&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315103/suppl/GSM315103.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315104 | GPL201 |
|
baseline_asn_GM18944_rep1
|
Lymphoblastoid cell lines derived from GM18944
|
coriell cell line repository identifier: GM18944
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18944.
|
Sample_geo_accession | GSM315104
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18944&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315104/suppl/GSM315104.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315105 | GPL201 |
|
baseline_asn_GM18945_rep1
|
Lymphoblastoid cell lines derived from GM18945
|
coriell cell line repository identifier: GM18945
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18945.
|
Sample_geo_accession | GSM315105
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18945&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315105/suppl/GSM315105.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315106 | GPL201 |
|
baseline_asn_GM18947_rep1
|
Lymphoblastoid cell lines derived from GM18947
|
coriell cell line repository identifier: GM18947
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18947.
|
Sample_geo_accession | GSM315106
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18947&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315106/suppl/GSM315106.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315107 | GPL201 |
|
baseline_asn_GM18948_rep1
|
Lymphoblastoid cell lines derived from GM18948
|
coriell cell line repository identifier: GM18948
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18948.
|
Sample_geo_accession | GSM315107
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18948&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315107/suppl/GSM315107.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315108 | GPL201 |
|
baseline_asn_GM18949_rep1
|
Lymphoblastoid cell lines derived from GM18949
|
coriell cell line repository identifier: GM18949
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18949.
|
Sample_geo_accession | GSM315108
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18949&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315108/suppl/GSM315108.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315109 | GPL201 |
|
baseline_asn_GM18952_rep1
|
Lymphoblastoid cell lines derived from GM18952
|
coriell cell line repository identifier: GM18952
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18952.
|
Sample_geo_accession | GSM315109
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18952&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315109/suppl/GSM315109.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315110 | GPL201 |
|
baseline_asn_GM18953_rep1
|
Lymphoblastoid cell lines derived from GM18953
|
coriell cell line repository identifier: GM18953
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18953.
|
Sample_geo_accession | GSM315110
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18953&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315110/suppl/GSM315110.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315111 | GPL201 |
|
baseline_asn_GM18956_rep1
|
Lymphoblastoid cell lines derived from GM18956
|
coriell cell line repository identifier: GM18956
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18956.
|
Sample_geo_accession | GSM315111
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18956&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315111/suppl/GSM315111.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315112 | GPL201 |
|
baseline_asn_GM18959_rep1
|
Lymphoblastoid cell lines derived from GM18959
|
coriell cell line repository identifier: GM18959
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18959.
|
Sample_geo_accession | GSM315112
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18959&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315112/suppl/GSM315112.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315113 | GPL201 |
|
baseline_asn_GM18960_rep1
|
Lymphoblastoid cell lines derived from GM18960
|
coriell cell line repository identifier: GM18960
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18960.
|
Sample_geo_accession | GSM315113
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18960&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315113/suppl/GSM315113.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315114 | GPL201 |
|
baseline_asn_GM18961_rep1
|
Lymphoblastoid cell lines derived from GM18961
|
coriell cell line repository identifier: GM18961
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18961.
|
Sample_geo_accession | GSM315114
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18961&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315114/suppl/GSM315114.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315115 | GPL201 |
|
baseline_asn_GM18964_rep1
|
Lymphoblastoid cell lines derived from GM18964
|
coriell cell line repository identifier: GM18964
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18964.
|
Sample_geo_accession | GSM315115
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18964&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315115/suppl/GSM315115.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315116 | GPL201 |
|
baseline_asn_GM18965_rep1
|
Lymphoblastoid cell lines derived from GM18965
|
coriell cell line repository identifier: GM18965
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18965.
|
Sample_geo_accession | GSM315116
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18965&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315116/suppl/GSM315116.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315117 | GPL201 |
|
baseline_asn_GM18966_rep1
|
Lymphoblastoid cell lines derived from GM18966
|
coriell cell line repository identifier: GM18966
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18966.
|
Sample_geo_accession | GSM315117
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18966&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315117/suppl/GSM315117.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315118 | GPL201 |
|
baseline_asn_GM18967_rep1
|
Lymphoblastoid cell lines derived from GM18967
|
coriell cell line repository identifier: GM18967
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18967.
|
Sample_geo_accession | GSM315118
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18967&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315118/suppl/GSM315118.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315119 | GPL201 |
|
baseline_asn_GM18968_rep1
|
Lymphoblastoid cell lines derived from GM18968
|
coriell cell line repository identifier: GM18968
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18968.
|
Sample_geo_accession | GSM315119
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18968&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315119/suppl/GSM315119.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315120 | GPL201 |
|
baseline_asn_GM18969_rep1
|
Lymphoblastoid cell lines derived from GM18969
|
coriell cell line repository identifier: GM18969
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18969.
|
Sample_geo_accession | GSM315120
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18969&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315120/suppl/GSM315120.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315121 | GPL201 |
|
baseline_asn_GM18970_rep1
|
Lymphoblastoid cell lines derived from GM18970
|
coriell cell line repository identifier: GM18970
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18970.
|
Sample_geo_accession | GSM315121
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18970&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315121/suppl/GSM315121.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315122 | GPL201 |
|
baseline_asn_GM18971_rep1
|
Lymphoblastoid cell lines derived from GM18971
|
coriell cell line repository identifier: GM18971
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18971.
|
Sample_geo_accession | GSM315122
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18971&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315122/suppl/GSM315122.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315123 | GPL201 |
|
baseline_asn_GM18972_rep1
|
Lymphoblastoid cell lines derived from GM18972
|
coriell cell line repository identifier: GM18972
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18972.
|
Sample_geo_accession | GSM315123
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18972&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315123/suppl/GSM315123.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315124 | GPL201 |
|
baseline_asn_GM18973_rep1
|
Lymphoblastoid cell lines derived from GM18973
|
coriell cell line repository identifier: GM18973
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18973.
|
Sample_geo_accession | GSM315124
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18973&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315124/suppl/GSM315124.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315125 | GPL201 |
|
baseline_asn_GM18974_rep1
|
Lymphoblastoid cell lines derived from GM18974
|
coriell cell line repository identifier: GM18974
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18974.
|
Sample_geo_accession | GSM315125
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18974&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315125/suppl/GSM315125.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315126 | GPL201 |
|
baseline_asn_GM18975_rep1
|
Lymphoblastoid cell lines derived from GM18975
|
coriell cell line repository identifier: GM18975
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18975.
|
Sample_geo_accession | GSM315126
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18975&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315126/suppl/GSM315126.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315127 | GPL201 |
|
baseline_asn_GM18976_rep1
|
Lymphoblastoid cell lines derived from GM18976
|
coriell cell line repository identifier: GM18976
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18976.
|
Sample_geo_accession | GSM315127
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18976&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315127/suppl/GSM315127.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315128 | GPL201 |
|
baseline_asn_GM18978_rep1
|
Lymphoblastoid cell lines derived from GM18978
|
coriell cell line repository identifier: GM18978
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18978.
|
Sample_geo_accession | GSM315128
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18978&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315128/suppl/GSM315128.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315129 | GPL201 |
|
baseline_asn_GM18980_rep1
|
Lymphoblastoid cell lines derived from GM18980
|
coriell cell line repository identifier: GM18980
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18980.
|
Sample_geo_accession | GSM315129
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18980&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315129/suppl/GSM315129.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315130 | GPL201 |
|
baseline_asn_GM18981_rep1
|
Lymphoblastoid cell lines derived from GM18981
|
coriell cell line repository identifier: GM18981
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18981.
|
Sample_geo_accession | GSM315130
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18981&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315130/suppl/GSM315130.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315131 | GPL201 |
|
baseline_asn_GM18987_rep1
|
Lymphoblastoid cell lines derived from GM18987
|
coriell cell line repository identifier: GM18987
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18987.
|
Sample_geo_accession | GSM315131
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18987&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315131/suppl/GSM315131.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315132 | GPL201 |
|
baseline_asn_GM18990_rep1
|
Lymphoblastoid cell lines derived from GM18990
|
coriell cell line repository identifier: GM18990
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18990.
|
Sample_geo_accession | GSM315132
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18990&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315132/suppl/GSM315132.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315133 | GPL201 |
|
baseline_asn_GM18991_rep1
|
Lymphoblastoid cell lines derived from GM18991
|
coriell cell line repository identifier: GM18991
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18991.
|
Sample_geo_accession | GSM315133
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18991&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315133/suppl/GSM315133.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315134 | GPL201 |
|
baseline_asn_GM18992_rep1
|
Lymphoblastoid cell lines derived from GM18992
|
coriell cell line repository identifier: GM18992
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18992.
|
Sample_geo_accession | GSM315134
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18992&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315134/suppl/GSM315134.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315135 | GPL201 |
|
baseline_asn_GM18994_rep1
|
Lymphoblastoid cell lines derived from GM18994
|
coriell cell line repository identifier: GM18994
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18994.
|
Sample_geo_accession | GSM315135
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18994&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315135/suppl/GSM315135.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315136 | GPL201 |
|
baseline_asn_GM18995_rep1
|
Lymphoblastoid cell lines derived from GM18995
|
coriell cell line repository identifier: GM18995
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18995.
|
Sample_geo_accession | GSM315136
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18995&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315136/suppl/GSM315136.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315137 | GPL201 |
|
baseline_asn_GM18999_rep1
|
Lymphoblastoid cell lines derived from GM18999
|
coriell cell line repository identifier: GM18999
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18999.
|
Sample_geo_accession | GSM315137
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18999&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315137/suppl/GSM315137.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315138 | GPL201 |
|
baseline_asn_GM19000_rep1
|
Lymphoblastoid cell lines derived from GM19000
|
coriell cell line repository identifier: GM19000
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19000.
|
Sample_geo_accession | GSM315138
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19000&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315138/suppl/GSM315138.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315139 | GPL201 |
|
baseline_asn_GM19003_rep1
|
Lymphoblastoid cell lines derived from GM19003
|
coriell cell line repository identifier: GM19003
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19003.
|
Sample_geo_accession | GSM315139
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19003&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315139/suppl/GSM315139.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315140 | GPL201 |
|
baseline_asn_GM19005_rep1
|
Lymphoblastoid cell lines derived from GM19005
|
coriell cell line repository identifier: GM19005
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19005.
|
Sample_geo_accession | GSM315140
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19005&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315140/suppl/GSM315140.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315141 | GPL201 |
|
baseline_asn_GM19007_rep1
|
Lymphoblastoid cell lines derived from GM19007
|
coriell cell line repository identifier: GM19007
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19007.
|
Sample_geo_accession | GSM315141
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19007&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315141/suppl/GSM315141.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315142 | GPL201 |
|
baseline_yri_GM18501_rep1
|
Lymphoblastoid cell lines derived from GM18501
|
coriell cell line repository identifier: GM18501
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18501.
|
Sample_geo_accession | GSM315142
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18501&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315142/suppl/GSM315142.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315143 | GPL201 |
|
baseline_yri_GM18502_rep1
|
Lymphoblastoid cell lines derived from GM18502
|
coriell cell line repository identifier: GM18502
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18502.
|
Sample_geo_accession | GSM315143
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18502&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315143/suppl/GSM315143.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315144 | GPL201 |
|
baseline_yri_GM18504_rep1
|
Lymphoblastoid cell lines derived from GM18504
|
coriell cell line repository identifier: GM18504
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18504.
|
Sample_geo_accession | GSM315144
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18504&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315144/suppl/GSM315144.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315145 | GPL201 |
|
baseline_yri_GM18505_rep1
|
Lymphoblastoid cell lines derived from GM18505
|
coriell cell line repository identifier: GM18505
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18505.
|
Sample_geo_accession | GSM315145
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18505&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315145/suppl/GSM315145.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315146 | GPL201 |
|
baseline_yri_GM18507_rep1
|
Lymphoblastoid cell lines derived from GM18507
|
coriell cell line repository identifier: GM18507
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18507.
|
Sample_geo_accession | GSM315146
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18507&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315146/suppl/GSM315146.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315147 | GPL201 |
|
baseline_yri_GM18508_rep1
|
Lymphoblastoid cell lines derived from GM18508
|
coriell cell line repository identifier: GM18508
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18508.
|
Sample_geo_accession | GSM315147
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18508&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315147/suppl/GSM315147.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315148 | GPL201 |
|
baseline_yri_GM18516_rep1
|
Lymphoblastoid cell lines derived from GM18516
|
coriell cell line repository identifier: GM18516
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18516.
|
Sample_geo_accession | GSM315148
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18516&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315148/suppl/GSM315148.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315149 | GPL201 |
|
baseline_yri_GM18517_rep1
|
Lymphoblastoid cell lines derived from GM18517
|
coriell cell line repository identifier: GM18517
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18517.
|
Sample_geo_accession | GSM315149
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18517&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315149/suppl/GSM315149.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315150 | GPL201 |
|
baseline_yri_GM18522_rep1
|
Lymphoblastoid cell lines derived from GM18522
|
coriell cell line repository identifier: GM18522
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18522.
|
Sample_geo_accession | GSM315150
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18522&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315150/suppl/GSM315150.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315151 | GPL201 |
|
baseline_yri_GM18523_rep1
|
Lymphoblastoid cell lines derived from GM18523
|
coriell cell line repository identifier: GM18523
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18523.
|
Sample_geo_accession | GSM315151
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18523&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315151/suppl/GSM315151.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315152 | GPL201 |
|
baseline_yri_GM18852_rep1
|
Lymphoblastoid cell lines derived from GM18852
|
coriell cell line repository identifier: GM18852
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18852.
|
Sample_geo_accession | GSM315152
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18852&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315152/suppl/GSM315152.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315153 | GPL201 |
|
baseline_yri_GM18853_rep1
|
Lymphoblastoid cell lines derived from GM18853
|
coriell cell line repository identifier: GM18853
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18853.
|
Sample_geo_accession | GSM315153
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18853&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315153/suppl/GSM315153.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315154 | GPL201 |
|
baseline_yri_GM18855_rep1
|
Lymphoblastoid cell lines derived from GM18855
|
coriell cell line repository identifier: GM18855
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18855.
|
Sample_geo_accession | GSM315154
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18855&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315154/suppl/GSM315154.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315155 | GPL201 |
|
baseline_yri_GM18856_rep1
|
Lymphoblastoid cell lines derived from GM18856
|
coriell cell line repository identifier: GM18856
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18856.
|
Sample_geo_accession | GSM315155
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18856&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315155/suppl/GSM315155.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315156 | GPL201 |
|
baseline_yri_GM18858_rep1
|
Lymphoblastoid cell lines derived from GM18858
|
coriell cell line repository identifier: GM18858
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18858.
|
Sample_geo_accession | GSM315156
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18858&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315156/suppl/GSM315156.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315157 | GPL201 |
|
baseline_yri_GM18859_rep1
|
Lymphoblastoid cell lines derived from GM18859
|
coriell cell line repository identifier: GM18859
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18859.
|
Sample_geo_accession | GSM315157
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18859&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315157/suppl/GSM315157.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315158 | GPL201 |
|
baseline_yri_GM18861_rep1
|
Lymphoblastoid cell lines derived from GM18861
|
coriell cell line repository identifier: GM18861
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18861.
|
Sample_geo_accession | GSM315158
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18861&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315158/suppl/GSM315158.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315159 | GPL201 |
|
baseline_yri_GM18862_rep1
|
Lymphoblastoid cell lines derived from GM18862
|
coriell cell line repository identifier: GM18862
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18862.
|
Sample_geo_accession | GSM315159
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18862&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315159/suppl/GSM315159.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315160 | GPL201 |
|
baseline_yri_GM18870_rep1
|
Lymphoblastoid cell lines derived from GM18870
|
coriell cell line repository identifier: GM18870
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18870.
|
Sample_geo_accession | GSM315160
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18870&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315160/suppl/GSM315160.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315161 | GPL201 |
|
baseline_yri_GM18871_rep1
|
Lymphoblastoid cell lines derived from GM18871
|
coriell cell line repository identifier: GM18871
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18871.
|
Sample_geo_accession | GSM315161
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18871&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315161/suppl/GSM315161.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315162 | GPL201 |
|
baseline_yri_GM18912_rep1
|
Lymphoblastoid cell lines derived from GM18912
|
coriell cell line repository identifier: GM18912
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18912.
|
Sample_geo_accession | GSM315162
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18912&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315162/suppl/GSM315162.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315163 | GPL201 |
|
baseline_yri_GM18913_rep1
|
Lymphoblastoid cell lines derived from GM18913
|
coriell cell line repository identifier: GM18913
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18913.
|
Sample_geo_accession | GSM315163
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18913&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315163/suppl/GSM315163.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315164 | GPL201 |
|
baseline_yri_GM19092_rep1
|
Lymphoblastoid cell lines derived from GM19092
|
coriell cell line repository identifier: GM19092
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19092.
|
Sample_geo_accession | GSM315164
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19092&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315164/suppl/GSM315164.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315165 | GPL201 |
|
baseline_yri_GM19093_rep1
|
Lymphoblastoid cell lines derived from GM19093
|
coriell cell line repository identifier: GM19093
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19093.
|
Sample_geo_accession | GSM315165
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19093&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315165/suppl/GSM315165.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315166 | GPL201 |
|
baseline_yri_GM19098_rep1
|
Lymphoblastoid cell lines derived from GM19098
|
coriell cell line repository identifier: GM19098
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19098.
|
Sample_geo_accession | GSM315166
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19098&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315166/suppl/GSM315166.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315167 | GPL201 |
|
baseline_yri_GM19099_rep1
|
Lymphoblastoid cell lines derived from GM19099
|
coriell cell line repository identifier: GM19099
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19099.
|
Sample_geo_accession | GSM315167
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19099&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315167/suppl/GSM315167.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315168 | GPL201 |
|
baseline_yri_GM19101_rep1
|
Lymphoblastoid cell lines derived from GM19101
|
coriell cell line repository identifier: GM19101
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19101.
|
Sample_geo_accession | GSM315168
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19101&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315168/suppl/GSM315168.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315169 | GPL201 |
|
baseline_yri_GM19102_rep1
|
Lymphoblastoid cell lines derived from GM19102
|
coriell cell line repository identifier: GM19102
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19102.
|
Sample_geo_accession | GSM315169
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19102&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315169/suppl/GSM315169.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315170 | GPL201 |
|
baseline_yri_GM19116_rep1
|
Lymphoblastoid cell lines derived from GM19116
|
coriell cell line repository identifier: GM19116
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19116.
|
Sample_geo_accession | GSM315170
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19116&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315170/suppl/GSM315170.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315171 | GPL201 |
|
baseline_yri_GM19119_rep1
|
Lymphoblastoid cell lines derived from GM19119
|
coriell cell line repository identifier: GM19119
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19119.
|
Sample_geo_accession | GSM315171
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19119&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315171/suppl/GSM315171.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315172 | GPL201 |
|
baseline_yri_GM19127_rep1
|
Lymphoblastoid cell lines derived from GM19127
|
coriell cell line repository identifier: GM19127
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19127.
|
Sample_geo_accession | GSM315172
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19127&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315172/suppl/GSM315172.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315173 | GPL201 |
|
baseline_yri_GM19128_rep1
|
Lymphoblastoid cell lines derived from GM19128
|
coriell cell line repository identifier: GM19128
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19128.
|
Sample_geo_accession | GSM315173
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19128&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315173/suppl/GSM315173.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315174 | GPL201 |
|
baseline_yri_GM19130_rep1
|
Lymphoblastoid cell lines derived from GM19130
|
coriell cell line repository identifier: GM19130
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19130.
|
Sample_geo_accession | GSM315174
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19130&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315174/suppl/GSM315174.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315175 | GPL201 |
|
baseline_yri_GM19131_rep1
|
Lymphoblastoid cell lines derived from GM19131
|
coriell cell line repository identifier: GM19131
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19131.
|
Sample_geo_accession | GSM315175
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19131&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315175/suppl/GSM315175.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315176 | GPL201 |
|
baseline_yri_GM19137_rep1
|
Lymphoblastoid cell lines derived from GM19137
|
coriell cell line repository identifier: GM19137
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19137.
|
Sample_geo_accession | GSM315176
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19137&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315176/suppl/GSM315176.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315177 | GPL201 |
|
baseline_yri_GM19138_rep1
|
Lymphoblastoid cell lines derived from GM19138
|
coriell cell line repository identifier: GM19138
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19138.
|
Sample_geo_accession | GSM315177
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19138&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315177/suppl/GSM315177.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315178 | GPL201 |
|
baseline_yri_GM19140_rep1
|
Lymphoblastoid cell lines derived from GM19140
|
coriell cell line repository identifier: GM19140
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19140.
|
Sample_geo_accession | GSM315178
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19140&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315178/suppl/GSM315178.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315179 | GPL201 |
|
baseline_yri_GM19141_rep1
|
Lymphoblastoid cell lines derived from GM19141
|
coriell cell line repository identifier: GM19141
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19141.
|
Sample_geo_accession | GSM315179
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19141&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315179/suppl/GSM315179.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315180 | GPL201 |
|
baseline_yri_GM19143_rep1
|
Lymphoblastoid cell lines derived from GM19143
|
coriell cell line repository identifier: GM19143
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19143.
|
Sample_geo_accession | GSM315180
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19143&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315180/suppl/GSM315180.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315181 | GPL201 |
|
baseline_yri_GM19144_rep1
|
Lymphoblastoid cell lines derived from GM19144
|
coriell cell line repository identifier: GM19144
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19144.
|
Sample_geo_accession | GSM315181
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19144&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315181/suppl/GSM315181.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315182 | GPL201 |
|
baseline_yri_GM19152_rep1
|
Lymphoblastoid cell lines derived from GM19152
|
coriell cell line repository identifier: GM19152
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19152.
|
Sample_geo_accession | GSM315182
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19152&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315182/suppl/GSM315182.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315183 | GPL201 |
|
baseline_yri_GM19153_rep1
|
Lymphoblastoid cell lines derived from GM19153
|
coriell cell line repository identifier: GM19153
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19153.
|
Sample_geo_accession | GSM315183
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19153&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315183/suppl/GSM315183.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315184 | GPL201 |
|
baseline_yri_GM19159_rep1
|
Lymphoblastoid cell lines derived from GM19159
|
coriell cell line repository identifier: GM19159
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19159.
|
Sample_geo_accession | GSM315184
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19159&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315184/suppl/GSM315184.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315185 | GPL201 |
|
baseline_yri_GM19160_rep1
|
Lymphoblastoid cell lines derived from GM19160
|
coriell cell line repository identifier: GM19160
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19160.
|
Sample_geo_accession | GSM315185
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19160&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315185/suppl/GSM315185.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315186 | GPL201 |
|
baseline_yri_GM19171_rep1
|
Lymphoblastoid cell lines derived from GM19171
|
coriell cell line repository identifier: GM19171
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19171.
|
Sample_geo_accession | GSM315186
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19171&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315186/suppl/GSM315186.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315187 | GPL201 |
|
baseline_yri_GM19172_rep1
|
Lymphoblastoid cell lines derived from GM19172
|
coriell cell line repository identifier: GM19172
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19172.
|
Sample_geo_accession | GSM315187
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19172&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315187/suppl/GSM315187.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315188 | GPL201 |
|
baseline_yri_GM19192_rep1
|
Lymphoblastoid cell lines derived from GM19192
|
coriell cell line repository identifier: GM19192
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19192.
|
Sample_geo_accession | GSM315188
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19192&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315188/suppl/GSM315188.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315189 | GPL201 |
|
baseline_yri_GM19193_rep1
|
Lymphoblastoid cell lines derived from GM19193
|
coriell cell line repository identifier: GM19193
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19193.
|
Sample_geo_accession | GSM315189
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19193&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315189/suppl/GSM315189.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315190 | GPL201 |
|
baseline_yri_GM19200_rep1
|
Lymphoblastoid cell lines derived from GM19200
|
coriell cell line repository identifier: GM19200
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19200.
|
Sample_geo_accession | GSM315190
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19200&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315190/suppl/GSM315190.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315191 | GPL201 |
|
baseline_yri_GM19201_rep1
|
Lymphoblastoid cell lines derived from GM19201
|
coriell cell line repository identifier: GM19201
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19201.
|
Sample_geo_accession | GSM315191
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19201&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315191/suppl/GSM315191.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315192 | GPL201 |
|
baseline_yri_GM19203_rep1
|
Lymphoblastoid cell lines derived from GM19203
|
coriell cell line repository identifier: GM19203
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19203.
|
Sample_geo_accession | GSM315192
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19203&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315192/suppl/GSM315192.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315193 | GPL201 |
|
baseline_yri_GM19204_rep1
|
Lymphoblastoid cell lines derived from GM19204
|
coriell cell line repository identifier: GM19204
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19204.
|
Sample_geo_accession | GSM315193
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19204&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315193/suppl/GSM315193.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315194 | GPL201 |
|
baseline_yri_GM19206_rep1
|
Lymphoblastoid cell lines derived from GM19206
|
coriell cell line repository identifier: GM19206
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19206.
|
Sample_geo_accession | GSM315194
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19206&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315194/suppl/GSM315194.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315195 | GPL201 |
|
baseline_yri_GM19207_rep1
|
Lymphoblastoid cell lines derived from GM19207
|
coriell cell line repository identifier: GM19207
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19207.
|
Sample_geo_accession | GSM315195
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19207&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315195/suppl/GSM315195.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315196 | GPL201 |
|
baseline_yri_GM19209_rep1
|
Lymphoblastoid cell lines derived from GM19209
|
coriell cell line repository identifier: GM19209
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19209.
|
Sample_geo_accession | GSM315196
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19209&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315196/suppl/GSM315196.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315197 | GPL201 |
|
baseline_yri_GM19210_rep1
|
Lymphoblastoid cell lines derived from GM19210
|
coriell cell line repository identifier: GM19210
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19210.
|
Sample_geo_accession | GSM315197
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19210&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315197/suppl/GSM315197.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315198 | GPL201 |
|
baseline_yri_GM19222_rep1
|
Lymphoblastoid cell lines derived from GM19222
|
coriell cell line repository identifier: GM19222
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19222.
|
Sample_geo_accession | GSM315198
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19222&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315198/suppl/GSM315198.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315199 | GPL201 |
|
baseline_yri_GM19223_rep1
|
Lymphoblastoid cell lines derived from GM19223
|
coriell cell line repository identifier: GM19223
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19223.
|
Sample_geo_accession | GSM315199
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19223&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315199/suppl/GSM315199.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315200 | GPL201 |
|
baseline_yri_GM19238_rep1
|
Lymphoblastoid cell lines derived from GM19238
|
coriell cell line repository identifier: GM19238
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19238.
|
Sample_geo_accession | GSM315200
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19238&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315200/suppl/GSM315200.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM315201 | GPL201 |
|
baseline_yri_GM19239_rep1
|
Lymphoblastoid cell lines derived from GM19239
|
coriell cell line repository identifier: GM19239
|
Gene expression data at baseline from lymphoblastoid cells of individual GM19239.
|
Sample_geo_accession | GSM315201
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Aug 22 2008
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM19239&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315201/suppl/GSM315201.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM416945 | GPL201 |
|
baseline_asn_GM18571_rep1
|
Lymphoblastoid cell lines derived from GM18571
|
coriell cell line repository identifier: GM18571
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18571.
|
Sample_geo_accession | GSM416945
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Jun 12 2009
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18571&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM416nnn/GSM416945/suppl/GSM416945.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM416946 | GPL201 |
|
baseline_asn_GM18572_rep1
|
Lymphoblastoid cell lines derived from GM18572
|
coriell cell line repository identifier: GM18572
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18572.
|
Sample_geo_accession | GSM416946
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Jun 12 2009
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18572&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM416nnn/GSM416946/suppl/GSM416946.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM416947 | GPL201 |
|
baseline_asn_GM18951_rep1
|
Lymphoblastoid cell lines derived from GM18951
|
coriell cell line repository identifier: GM18951
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18951.
|
Sample_geo_accession | GSM416947
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Jun 12 2009
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18951&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM416nnn/GSM416947/suppl/GSM416947.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM416948 | GPL201 |
|
baseline_asn_GM18997_rep1
|
Lymphoblastoid cell lines derived from GM18997
|
coriell cell line repository identifier: GM18997
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18997.
|
Sample_geo_accession | GSM416948
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Jun 12 2009
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18997&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM416nnn/GSM416948/suppl/GSM416948.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
| |
|
GSM416949 | GPL201 |
|
baseline_asn_GM18998_rep1
|
Lymphoblastoid cell lines derived from GM18998
|
coriell cell line repository identifier: GM18998
|
Gene expression data at baseline from lymphoblastoid cells of individual GM18998.
|
Sample_geo_accession | GSM416949
| Sample_status | Public on Aug 13 2009
| Sample_submission_date | Jun 12 2009
| Sample_last_update_date | Aug 13 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | Coriell Cell Repositories; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18998&PgId=166
| Sample_growth_protocol_ch1 | The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human HG-Focus Target Array (U95v2). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
| Sample_platform_id | GPL201
| Sample_contact_name | Renuka,,Nayak
| Sample_contact_institute | HHMI, University of Pennsylvania
| Sample_contact_address | 3516 Civic Center Blvd
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM416nnn/GSM416949/suppl/GSM416949.CEL.gz
| Sample_series_id | GSE12526
| Sample_data_row_count | 8793
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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