Search results for the GEO ID: GSE12599  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM315794 | GPL1261 |
|
kidney glomerulus, PBS treated mice, 24hour post injection, biological rep1
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Mouse kidney glomerulus
|
Strain: C57BL/6, Gender: female, Age: 9 week Tissue: kidney glomerulus
|
Gene expression data from PBS treated mice kidney glomerulus
|
| Sample_geo_accession | GSM315794
| | Sample_status | Public on Aug 26 2009
| | Sample_submission_date | Aug 27 2008
| | Sample_last_update_date | Aug 27 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed according to the manufacturer's instructions ( RNeasy Mini Kit (Qiagen, cat.# 74104) for kidney glomerulus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with GCRMA package in the bioconductor project (R version 2.4.1, gcrma version 2.6.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ying,,sun
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Scheeles Vag 2
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | SE171 77
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315794/suppl/GSM315794.CEL.gz
| | Sample_series_id | GSE12599
| | Sample_data_row_count | 45101
| | |
|
GSM315795 | GPL1261 |
|
kidney glomerulus, PBS treated mice, 24hour post injection, biological rep2
|
Mouse kidney glomerulus
|
Strain: C57BL/6, Gender: female, Age: 9 week Tissue: kidney glomerulus
|
Gene expression data from PBS treated mice kidney glomerulus
|
| Sample_geo_accession | GSM315795
| | Sample_status | Public on Aug 26 2009
| | Sample_submission_date | Aug 27 2008
| | Sample_last_update_date | Aug 27 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed according to the manufacturer's instructions ( RNeasy Mini Kit (Qiagen, cat.# 74104) for kidney glomerulus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with GCRMA package in the bioconductor project (R version 2.4.1, gcrma version 2.6.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ying,,sun
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Scheeles Vag 2
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | SE171 77
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315795/suppl/GSM315795.CEL.gz
| | Sample_series_id | GSE12599
| | Sample_data_row_count | 45101
| | |
|
GSM315796 | GPL1261 |
|
kidney glomerulus, PBS treated mice, 24hour post injection, biological rep3
|
Mouse kidney glomerulus
|
Strain: C57BL/6, Gender: female, Age: 9 week Tissue: kidney glomerulus
|
Gene expression data from PBS treated mice kidney glomerulus
|
| Sample_geo_accession | GSM315796
| | Sample_status | Public on Aug 26 2009
| | Sample_submission_date | Aug 27 2008
| | Sample_last_update_date | Aug 27 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed according to the manufacturer's instructions ( RNeasy Mini Kit (Qiagen, cat.# 74104) for kidney glomerulus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with GCRMA package in the bioconductor project (R version 2.4.1, gcrma version 2.6.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ying,,sun
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Scheeles Vag 2
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | SE171 77
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315796/suppl/GSM315796.CEL.gz
| | Sample_series_id | GSE12599
| | Sample_data_row_count | 45101
| | |
|
GSM315797 | GPL1261 |
|
kidney glomerulus, PBS treated mice, 24hour post injection, biological rep4
|
Mouse kidney glomerulus
|
Strain: C57BL/6, Gender: female, Age: 9 week Tissue: kidney glomerulus
|
Gene expression data from PBS treated mice kidney glomerulus
|
| Sample_geo_accession | GSM315797
| | Sample_status | Public on Aug 26 2009
| | Sample_submission_date | Aug 27 2008
| | Sample_last_update_date | Aug 28 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed according to the manufacturer's instructions ( RNeasy Mini Kit (Qiagen, cat.# 74104) for kidney glomerulus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with GCRMA package in the bioconductor project (R version 2.4.1, gcrma version 2.6.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ying,,sun
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Scheeles Vag 2
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | SE171 77
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315797/suppl/GSM315797.CEL.gz
| | Sample_series_id | GSE12599
| | Sample_data_row_count | 45101
| | |
|
GSM315798 | GPL1261 |
|
kidney glomerulus, LPS treated mice, 24hour post injection, biological rep1
|
Mouse kidney glomerulus
|
Strain: C57BL/6, Gender: female, Age: 9 week Tissue: kidney glomerulus
|
Gene expression data from LPS treated mice kidney glomerulus
|
| Sample_geo_accession | GSM315798
| | Sample_status | Public on Aug 26 2009
| | Sample_submission_date | Aug 27 2008
| | Sample_last_update_date | Aug 27 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed according to the manufacturer's instructions ( RNeasy Mini Kit (Qiagen, cat.# 74104) for kidney glomerulus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with GCRMA package in the bioconductor project (R version 2.4.1, gcrma version 2.6.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ying,,sun
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Scheeles Vag 2
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | SE171 77
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315798/suppl/GSM315798.CEL.gz
| | Sample_series_id | GSE12599
| | Sample_data_row_count | 45101
| | |
|
GSM315799 | GPL1261 |
|
kidney glomerulus, LPS treated mice, 24hour post injection, biological rep2
|
Mouse kidney glomerulus
|
Strain: C57BL/6, Gender: female, Age: 9 week Tissue: kidney glomerulus
|
Gene expression data from LPS treated mice kidney glomerulus
|
| Sample_geo_accession | GSM315799
| | Sample_status | Public on Aug 26 2009
| | Sample_submission_date | Aug 27 2008
| | Sample_last_update_date | Aug 27 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed according to the manufacturer's instructions ( RNeasy Mini Kit (Qiagen, cat.# 74104) for kidney glomerulus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with GCRMA package in the bioconductor project (R version 2.4.1, gcrma version 2.6.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ying,,sun
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Scheeles Vag 2
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | SE171 77
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315799/suppl/GSM315799.CEL.gz
| | Sample_series_id | GSE12599
| | Sample_data_row_count | 45101
| | |
|
GSM315800 | GPL1261 |
|
kidney glomerulus, LPS treated mice, 24hour post injection, biological rep3
|
Mouse kidney glomerulus
|
Strain: C57BL/6, Gender: female, Age: 9 week Tissue: kidney glomerulus
|
Gene expression data from LPS treated mice kidney glomerulus
|
| Sample_geo_accession | GSM315800
| | Sample_status | Public on Aug 26 2009
| | Sample_submission_date | Aug 27 2008
| | Sample_last_update_date | Aug 27 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed according to the manufacturer's instructions ( RNeasy Mini Kit (Qiagen, cat.# 74104) for kidney glomerulus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with GCRMA package in the bioconductor project (R version 2.4.1, gcrma version 2.6.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ying,,sun
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Scheeles Vag 2
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | SE171 77
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315800/suppl/GSM315800.CEL.gz
| | Sample_series_id | GSE12599
| | Sample_data_row_count | 45101
| | |
|
GSM315801 | GPL1261 |
|
kidney glomerulus, LPS treated mice, 24hour post injection, biological rep4
|
Mouse kidney glomerulus
|
Strain: C57BL/6, Gender: female, Age: 9 week Tissue: kidney glomerulus
|
Gene expression data from LPS treated mice kidney glomerulus
|
| Sample_geo_accession | GSM315801
| | Sample_status | Public on Aug 26 2009
| | Sample_submission_date | Aug 27 2008
| | Sample_last_update_date | Aug 27 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed according to the manufacturer's instructions ( RNeasy Mini Kit (Qiagen, cat.# 74104) for kidney glomerulus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with GCRMA package in the bioconductor project (R version 2.4.1, gcrma version 2.6.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ying,,sun
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Scheeles Vag 2
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | SE171 77
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315801/suppl/GSM315801.CEL.gz
| | Sample_series_id | GSE12599
| | Sample_data_row_count | 45101
| | |
|
GSM315802 | GPL1261 |
|
kidney glomerulus, LPS treated mice, 24hour post injection, biological rep5
|
Mouse kidney glomerulus
|
Strain: C57BL/6, Gender: female, Age: 9 week Tissue: kidney glomerulus
|
Gene expression data from LPS treated mice kidney glomerulus
|
| Sample_geo_accession | GSM315802
| | Sample_status | Public on Aug 26 2009
| | Sample_submission_date | Aug 27 2008
| | Sample_last_update_date | Aug 27 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed according to the manufacturer's instructions ( RNeasy Mini Kit (Qiagen, cat.# 74104) for kidney glomerulus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with GCRMA package in the bioconductor project (R version 2.4.1, gcrma version 2.6.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ying,,sun
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Scheeles Vag 2
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | SE171 77
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315802/suppl/GSM315802.CEL.gz
| | Sample_series_id | GSE12599
| | Sample_data_row_count | 45101
| | |
|
GSM315803 | GPL1261 |
|
kidney glomerulus, LPS treated mice, 24hour post injection, biological rep6
|
Mouse kidney glomerulus
|
Strain: C57BL/6, Gender: female, Age: 9 week Tissue: kidney glomerulus
|
Gene expression data from LPS treated mice kidney glomerulus
|
| Sample_geo_accession | GSM315803
| | Sample_status | Public on Aug 26 2009
| | Sample_submission_date | Aug 27 2008
| | Sample_last_update_date | Aug 27 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Extraction of total RNA was performed according to the manufacturer's instructions ( RNeasy Mini Kit (Qiagen, cat.# 74104) for kidney glomerulus)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the Affymetrix (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with GCRMA package in the bioconductor project (R version 2.4.1, gcrma version 2.6.0).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | ying,,sun
| | Sample_contact_institute | Karolinska Institutet
| | Sample_contact_address | Scheeles Vag 2
| | Sample_contact_city | Stockholm
| | Sample_contact_zip/postal_code | SE171 77
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM315nnn/GSM315803/suppl/GSM315803.CEL.gz
| | Sample_series_id | GSE12599
| | Sample_data_row_count | 45101
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