Search results for the GEO ID: GSE12643  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM317322 | GPL8300 |
|
type 2 diabetes subject 01
|
myotubes from type 2 diabetes subject
|
Only sedentary male subjects were recruited. Patients with type 2 diabetes were either treated by diet alone or in combination with sulphonylurea or metformin, which were withdrawn one week prior to the study. The patients were all GAD65 antibody negative and without signs of diabetic retinopathy, nephropathy, neuropathy or macrovascular complications.
|
type 2 diabetes subject 01
|
| Sample_geo_accession | GSM317322
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317322/suppl/GSM317322.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317323 | GPL8300 |
|
type 2 diabetes subject 02
|
myotubes from type 2 diabetes subject
|
Only sedentary male subjects were recruited. Patients with type 2 diabetes were either treated by diet alone or in combination with sulphonylurea or metformin, which were withdrawn one week prior to the study. The patients were all GAD65 antibody negative and without signs of diabetic retinopathy, nephropathy, neuropathy or macrovascular complications.
|
type 2 diabetes subject 02
|
| Sample_geo_accession | GSM317323
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317323/suppl/GSM317323.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317324 | GPL8300 |
|
type 2 diabetes subject 03
|
myotubes from type 2 diabetes subject
|
Only sedentary male subjects were recruited. Patients with type 2 diabetes were either treated by diet alone or in combination with sulphonylurea or metformin, which were withdrawn one week prior to the study. The patients were all GAD65 antibody negative and without signs of diabetic retinopathy, nephropathy, neuropathy or macrovascular complications.
|
type 2 diabetes subject 03
|
| Sample_geo_accession | GSM317324
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317324/suppl/GSM317324.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317325 | GPL8300 |
|
type 2 diabetes subject 04
|
myotubes from type 2 diabetes subject
|
Only sedentary male subjects were recruited. Patients with type 2 diabetes were either treated by diet alone or in combination with sulphonylurea or metformin, which were withdrawn one week prior to the study. The patients were all GAD65 antibody negative and without signs of diabetic retinopathy, nephropathy, neuropathy or macrovascular complications.
|
type 2 diabetes subject 04
|
| Sample_geo_accession | GSM317325
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317325/suppl/GSM317325.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317326 | GPL8300 |
|
type 2 diabetes subject 05
|
myotubes from type 2 diabetes subject
|
Only sedentary male subjects were recruited. Patients with type 2 diabetes were either treated by diet alone or in combination with sulphonylurea or metformin, which were withdrawn one week prior to the study. The patients were all GAD65 antibody negative and without signs of diabetic retinopathy, nephropathy, neuropathy or macrovascular complications.
|
type 2 diabetes subject 05
|
| Sample_geo_accession | GSM317326
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317326/suppl/GSM317326.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317327 | GPL8300 |
|
type 2 diabetes subject 06
|
myotubes from type 2 diabetes subject
|
Only sedentary male subjects were recruited. Patients with type 2 diabetes were either treated by diet alone or in combination with sulphonylurea or metformin, which were withdrawn one week prior to the study. The patients were all GAD65 antibody negative and without signs of diabetic retinopathy, nephropathy, neuropathy or macrovascular complications.
|
type 2 diabetes subject 06
|
| Sample_geo_accession | GSM317327
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317327/suppl/GSM317327.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317328 | GPL8300 |
|
type 2 diabetes subject 07
|
myotubes from type 2 diabetes subject
|
Only sedentary male subjects were recruited. Patients with type 2 diabetes were either treated by diet alone or in combination with sulphonylurea or metformin, which were withdrawn one week prior to the study. The patients were all GAD65 antibody negative and without signs of diabetic retinopathy, nephropathy, neuropathy or macrovascular complications.
|
type 2 diabetes subject 07
|
| Sample_geo_accession | GSM317328
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317328/suppl/GSM317328.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317329 | GPL8300 |
|
type 2 diabetes subject 08
|
myotubes from type 2 diabetes subject
|
Only sedentary male subjects were recruited. Patients with type 2 diabetes were either treated by diet alone or in combination with sulphonylurea or metformin, which were withdrawn one week prior to the study. The patients were all GAD65 antibody negative and without signs of diabetic retinopathy, nephropathy, neuropathy or macrovascular complications.
|
type 2 diabetes subject 08
|
| Sample_geo_accession | GSM317329
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317329/suppl/GSM317329.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317330 | GPL8300 |
|
type 2 diabetes subject 09
|
myotubes from type 2 diabetes subject
|
Only sedentary male subjects were recruited. Patients with type 2 diabetes were either treated by diet alone or in combination with sulphonylurea or metformin, which were withdrawn one week prior to the study. The patients were all GAD65 antibody negative and without signs of diabetic retinopathy, nephropathy, neuropathy or macrovascular complications.
|
type 2 diabetes subject 09
|
| Sample_geo_accession | GSM317330
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317330/suppl/GSM317330.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317331 | GPL8300 |
|
type 2 diabetes subject 10
|
myotubes from type 2 diabetes subject
|
Only sedentary male subjects were recruited. Patients with type 2 diabetes were either treated by diet alone or in combination with sulphonylurea or metformin, which were withdrawn one week prior to the study. The patients were all GAD65 antibody negative and without signs of diabetic retinopathy, nephropathy, neuropathy or macrovascular complications.
|
type 2 diabetes subject 10
|
| Sample_geo_accession | GSM317331
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317331/suppl/GSM317331.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317332 | GPL8300 |
|
Cont subject 01
|
myotubes from control subject
|
The control subjects had normal glucose tolerance and no family history of diabetes.
|
control subject 01
|
| Sample_geo_accession | GSM317332
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317332/suppl/GSM317332.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317333 | GPL8300 |
|
Cont subject 02
|
myotubes from control subject
|
The control subjects had normal glucose tolerance and no family history of diabetes.
|
control subject 02
|
| Sample_geo_accession | GSM317333
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317333/suppl/GSM317333.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317334 | GPL8300 |
|
Cont subject 03
|
myotubes from control subject
|
The control subjects had normal glucose tolerance and no family history of diabetes.
|
control subject 03
|
| Sample_geo_accession | GSM317334
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317334/suppl/GSM317334.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317335 | GPL8300 |
|
Cont subject 04
|
myotubes from control subject
|
The control subjects had normal glucose tolerance and no family history of diabetes.
|
control subject 04
|
| Sample_geo_accession | GSM317335
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317335/suppl/GSM317335.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317336 | GPL8300 |
|
Cont subject 05
|
myotubes from control subject
|
The control subjects had normal glucose tolerance and no family history of diabetes.
|
control subject 05
|
| Sample_geo_accession | GSM317336
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317336/suppl/GSM317336.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317337 | GPL8300 |
|
Cont subject 06
|
myotubes from control subject
|
The control subjects had normal glucose tolerance and no family history of diabetes.
|
control subject 06
|
| Sample_geo_accession | GSM317337
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317337/suppl/GSM317337.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317338 | GPL8300 |
|
Cont subject 07
|
myotubes from control subject
|
The control subjects had normal glucose tolerance and no family history of diabetes.
|
control subject 07
|
| Sample_geo_accession | GSM317338
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317338/suppl/GSM317338.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317339 | GPL8300 |
|
Cont subject 08
|
myotubes from control subject
|
The control subjects had normal glucose tolerance and no family history of diabetes.
|
control subject 08
|
| Sample_geo_accession | GSM317339
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317339/suppl/GSM317339.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317340 | GPL8300 |
|
Cont subject 09
|
myotubes from control subject
|
The control subjects had normal glucose tolerance and no family history of diabetes.
|
control subject 09
|
| Sample_geo_accession | GSM317340
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317340/suppl/GSM317340.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
GSM317341 | GPL8300 |
|
Cont subject 10
|
myotubes from control subject
|
The control subjects had normal glucose tolerance and no family history of diabetes.
|
control subject 10
|
| Sample_geo_accession | GSM317341
| | Sample_status | Public on Sep 03 2008
| | Sample_submission_date | Sep 02 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared from muscle cell cultures using RNeasy (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | In vitro transcription was performed on 1 µg of cDNA using the Enzo BioArray High Yield RNA transcript labelling kit (Enzo Diagnostics, USA)
| | Sample_hyb_protocol | 10 µg of fragmented cRNA were hybridised to a U95Av2 GeneChip (Affymetrix) using their standard procedure (45°C, 16-h). Washing and staining was performed in a Fluidics Station 400 (Affymetrix) using the protocol EukGE-WS2v4.
| | Sample_scan_protocol | Scanned in an Affymetrix GeneChip 2500 scanner.
| | Sample_data_processing | Microarray normalisation and calculation of expression measures were performed using Robust Multiarray Average, implemented in the statistical package R provided by Bioconductor (Seattle, WA, USA). The expression values were log 2 transformed to obtain a normal distribution across arrays and samples. Before analysing the expression data we removed Affymetrix control probes, resulting in a total of 12,558 probes.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Casper,,Frederiksen
| | Sample_contact_institute | Odense University Hospital
| | Sample_contact_address | Kloevervaenget 6
| | Sample_contact_city | Odense
| | Sample_contact_zip/postal_code | DK-5000
| | Sample_contact_country | Denmark
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317341/suppl/GSM317341.CEL.gz
| | Sample_series_id | GSE12643
| | Sample_data_row_count | 12558
| | |
|
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