Search results for the GEO ID: GSE12657  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM317711 | GPL8300 |
|
Glioblastoma, case GB1
|
Glioblastoma, case GB1
|
Glioblastoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317711
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317711/suppl/GSM317711.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317712 | GPL8300 |
|
Glioblastoma, case GB4
|
Glioblastoma, case GB4
|
Glioblastoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317712
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317712/suppl/GSM317712.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317713 | GPL8300 |
|
Glioblastoma, case GB6
|
Glioblastoma, case GB6
|
Glioblastoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317713
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317713/suppl/GSM317713.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317714 | GPL8300 |
|
Glioblastoma, case GB7
|
Glioblastoma, case GB7
|
Glioblastoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317714
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317714/suppl/GSM317714.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317715 | GPL8300 |
|
Glioblastoma, case GB10
|
Glioblastoma, case GB10
|
Glioblastoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317715
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317715/suppl/GSM317715.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317716 | GPL8300 |
|
Glioblastoma, case GB12
|
Glioblastoma, case GB12
|
Glioblastoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317716
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317716/suppl/GSM317716.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317717 | GPL8300 |
|
Glioblastoma, case GB13
|
Glioblastoma, case GB13
|
Glioblastoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317717
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317717/suppl/GSM317717.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317718 | GPL8300 |
|
Control, case N1
|
Control, case N1
|
Control
|
Gene expression data from human
|
| Sample_geo_accession | GSM317718
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317718/suppl/GSM317718.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317719 | GPL8300 |
|
Control, case N2
|
Control, case N2
|
Control
|
Gene expression data from human
|
| Sample_geo_accession | GSM317719
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317719/suppl/GSM317719.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317720 | GPL8300 |
|
Control, case N6
|
Control, case N6
|
Control
|
Gene expression data from human
|
| Sample_geo_accession | GSM317720
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317720/suppl/GSM317720.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317721 | GPL8300 |
|
Control, case N7
|
Control, case N7
|
Control
|
Gene expression data from human
|
| Sample_geo_accession | GSM317721
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317721/suppl/GSM317721.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317722 | GPL8300 |
|
Control, case N11
|
Control, case N11
|
Control
|
Gene expression data from human
|
| Sample_geo_accession | GSM317722
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317722/suppl/GSM317722.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317723 | GPL8300 |
|
Oligodendroglioma, case O1
|
Oligodendroglioma, case O1
|
Oligodendroglioma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317723
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317723/suppl/GSM317723.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317724 | GPL8300 |
|
Oligodendroglioma, case O4
|
Oligodendroglioma, case O4
|
Oligodendroglioma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317724
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317724/suppl/GSM317724.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317725 | GPL8300 |
|
Oligodendroglioma, case O4', replicate of case 4 (O4)
|
Oligodendroglioma, case O4', replicate of case 4 (O4)
|
Oligodendroglioma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317725
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317725/suppl/GSM317725.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317726 | GPL8300 |
|
Oligodendroglioma, case O5
|
Oligodendroglioma, case O5
|
Oligodendroglioma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317726
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317726/suppl/GSM317726.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317727 | GPL8300 |
|
Oligodendroglioma, case O6
|
Oligodendroglioma, case O6
|
Oligodendroglioma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317727
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317727/suppl/GSM317727.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317728 | GPL8300 |
|
Oligodendroglioma, case O7
|
Oligodendroglioma, case O7
|
Oligodendroglioma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317728
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317728/suppl/GSM317728.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317729 | GPL8300 |
|
Oligodendroglioma, case O8
|
Oligodendroglioma, case O8
|
Oligodendroglioma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317729
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317729/suppl/GSM317729.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317730 | GPL8300 |
|
Pilocytic astrocytoma, case PA1
|
Pilocytic astrocytoma, case PA1
|
Pilocytic astrocytoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317730
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317730/suppl/GSM317730.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317731 | GPL8300 |
|
Pilocytic astrocytoma, case PA2
|
Pilocytic astrocytoma, case PA2
|
Pilocytic astrocytoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317731
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317731/suppl/GSM317731.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317732 | GPL8300 |
|
Pilocytic astrocytoma, case PA3
|
Pilocytic astrocytoma, case PA3
|
Pilocytic astrocytoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317732
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317732/suppl/GSM317732.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317733 | GPL8300 |
|
Pilocytic astrocytoma, case PA5
|
Pilocytic astrocytoma, case PA5
|
Pilocytic astrocytoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317733
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317733/suppl/GSM317733.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
| | |
|
GSM317734 | GPL8300 |
|
Pilocytic astrocytoma, case PA6
|
Pilocytic astrocytoma, case PA6
|
Pilocytic astrocytoma
|
Gene expression data from human
|
| Sample_geo_accession | GSM317734
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317734/suppl/GSM317734.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
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GSM317735 | GPL8300 |
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Pilocytic astrocytoma, case PA12
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Pilocytic astrocytoma, case PA12
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Pilocytic astrocytoma
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Gene expression data from human
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| Sample_geo_accession | GSM317735
| | Sample_status | Public on Sep 09 2008
| | Sample_submission_date | Sep 03 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol (http://www.qiagen.com). Tissue samples (provided by M Deprez, Liege, Belgium) were mechanically disrupted using a rotary homogenizer, lysed in buffer containing guanidine isothiocyanate (GITC) and then further homogenized (Shredder tubes, Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared from total RNA according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC to chip A of Affymetrix GeneChip Human Genome U95 Version (HG-U95A; Affymetrix). The GeneChips was washed and stained in an Affymetrix Fluidics Station 400. Standard Affymetrix Protocols were used (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_scan_protocol | Standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2001).
| | Sample_data_processing | ArrayAssist 5.5 GC-RMA
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Linda,B,Moran
| | Sample_contact_department | Neuropathology
| | Sample_contact_institute | Imperial College London
| | Sample_contact_address | Fulham Palace Road
| | Sample_contact_city | London
| | Sample_contact_zip/postal_code | W6 8RF
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM317nnn/GSM317735/suppl/GSM317735.CEL.gz
| | Sample_series_id | GSE12657
| | Sample_data_row_count | 12625
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