Search results for the GEO ID: GSE12687 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM318550 | GPL339 |
|
Het_Gap43_Repl2
|
Mouse barrel cortex
|
This sample is 1 of 3 heterozygous (HZ) mouse samples prepared from postnatal day 5 C57BL/6 barrel cortex.
|
A total of 9 postnatal day 5 C57BL/6 Wildtype (WT), Heterozygous (HZ), or Knockout (KO) mice (n=3/genotype) for the GAP-43 gene were used. See Maier et al. (1999) [PMID: 10430954] for details on the generation of the mouse lines.
|
Sample_geo_accession | GSM318550
| Sample_status | Public on Jun 01 2009
| Sample_submission_date | Sep 05 2008
| Sample_last_update_date | Feb 20 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser microdissection of layer IV from barrel cortex, followed by Qiagen RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix Two-Cycle cDNA Synthesis Protocol from the GeneChip
| Sample_label_protocol_ch1 | Expression Analysis Technical Manual (P/N 702232, Rev. 2) was used
| Sample_hyb_protocol | GeneChip Hybridization, Wash and Stain Kit was used (Affymetrix, P/N 900720). Hybridization performed in GeneChip Hybridization Oven 640 for 16 hrs at 45C, with 60rpm rotation. Washing and staining performed in Fluidics Station 450 according to the EukGE-WS2v4 protocol.
| Sample_scan_protocol | Scanning performed on Agilent G2500A Gene Array Scanner.
| Sample_data_processing | MAS 5.0 values generated from CEL files images in Expression Console
| Sample_platform_id | GPL339
| Sample_contact_name | Frank,A,Middleton
| Sample_contact_email | middletf@upstate.edu
| Sample_contact_phone | 315-464-7721
| Sample_contact_department | Neuroscience and Physiology
| Sample_contact_institute | SUNY Upstate Medical Univ
| Sample_contact_address | 750 East Adams St
| Sample_contact_city | Syracuse
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 13210
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318550/suppl/GSM318550.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318550/suppl/GSM318550.CHP.gz
| Sample_series_id | GSE12687
| Sample_data_row_count | 22690
| |
|
GSM318551 | GPL339 |
|
Het_Gap43_Repl1
|
Mouse barrel cortex
|
This sample is 1 of 3 heterozygous (HZ) mouse samples prepared from postnatal day 5 C57BL/6 barrel cortex.
|
A total of 9 postnatal day 5 C57BL/6 Wildtype (WT), Heterozygous (HZ), or Knockout (KO) mice (n=3/genotype) for the GAP-43 gene were used. See Maier et al. (1999) [PMID: 10430954] for details on the generation of the mouse lines.
|
Sample_geo_accession | GSM318551
| Sample_status | Public on Jun 01 2009
| Sample_submission_date | Sep 05 2008
| Sample_last_update_date | Feb 20 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser microdissection of layer IV from barrel cortex, followed by Qiagen RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix Two-Cycle cDNA Synthesis Protocol from the GeneChip
| Sample_label_protocol_ch1 | Expression Analysis Technical Manual (P/N 702232, Rev. 2) was used
| Sample_hyb_protocol | GeneChip Hybridization, Wash and Stain Kit was used (Affymetrix, P/N 900720). Hybridization performed in GeneChip Hybridization Oven 640 for 16 hrs at 45C, with 60rpm rotation. Washing and staining performed in Fluidics Station 450 according to the EukGE-WS2v4 protocol.
| Sample_scan_protocol | Scanning performed on Agilent G2500A Gene Array Scanner.
| Sample_data_processing | MAS 5.0 values generated from CEL files images in Expression Console
| Sample_platform_id | GPL339
| Sample_contact_name | Frank,A,Middleton
| Sample_contact_email | middletf@upstate.edu
| Sample_contact_phone | 315-464-7721
| Sample_contact_department | Neuroscience and Physiology
| Sample_contact_institute | SUNY Upstate Medical Univ
| Sample_contact_address | 750 East Adams St
| Sample_contact_city | Syracuse
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 13210
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318551/suppl/GSM318551.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318551/suppl/GSM318551.CHP.gz
| Sample_series_id | GSE12687
| Sample_data_row_count | 22690
| |
|
GSM318552 | GPL339 |
|
Het_Gap43_Repl3
|
Mouse barrel cortex
|
This sample is 1 of 3 heterozygous (HZ) mouse samples prepared from postnatal day 5 C57BL/6 barrel cortex.
|
A total of 9 postnatal day 5 C57BL/6 Wildtype (WT), Heterozygous (HZ), or Knockout (KO) mice (n=3/genotype) for the GAP-43 gene were used. See Maier et al. (1999) [PMID: 10430954] for details on the generation of the mouse lines.
|
Sample_geo_accession | GSM318552
| Sample_status | Public on Jun 01 2009
| Sample_submission_date | Sep 05 2008
| Sample_last_update_date | Feb 20 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser microdissection of layer IV from barrel cortex, followed by Qiagen RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix Two-Cycle cDNA Synthesis Protocol from the GeneChip
| Sample_label_protocol_ch1 | Expression Analysis Technical Manual (P/N 702232, Rev. 2) was used
| Sample_hyb_protocol | GeneChip Hybridization, Wash and Stain Kit was used (Affymetrix, P/N 900720). Hybridization performed in GeneChip Hybridization Oven 640 for 16 hrs at 45C, with 60rpm rotation. Washing and staining performed in Fluidics Station 450 according to the EukGE-WS2v4 protocol.
| Sample_scan_protocol | Scanning performed on Agilent G2500A Gene Array Scanner.
| Sample_data_processing | MAS 5.0 values generated from CEL files images in Expression Console
| Sample_platform_id | GPL339
| Sample_contact_name | Frank,A,Middleton
| Sample_contact_email | middletf@upstate.edu
| Sample_contact_phone | 315-464-7721
| Sample_contact_department | Neuroscience and Physiology
| Sample_contact_institute | SUNY Upstate Medical Univ
| Sample_contact_address | 750 East Adams St
| Sample_contact_city | Syracuse
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 13210
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318552/suppl/GSM318552.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318552/suppl/GSM318552.CHP.gz
| Sample_series_id | GSE12687
| Sample_data_row_count | 22690
| |
|
GSM318553 | GPL339 |
|
KO_Gap43_Repl1
|
Mouse barrel cortex
|
This sample is 1 of 3 knockout (KO) mouse samples prepared from postnatal day 5 C57BL/6 barrel cortex.
|
A total of 9 postnatal day 5 C57BL/6 Wildtype (WT), Heterozygous (HZ), or Knockout (KO) mice (n=3/genotype) for the GAP-43 gene were used. See Maier et al. (1999) [PMID: 10430954] for details on the generation of the mouse lines.
|
Sample_geo_accession | GSM318553
| Sample_status | Public on Jun 01 2009
| Sample_submission_date | Sep 05 2008
| Sample_last_update_date | Feb 20 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser microdissection of layer IV from barrel cortex, followed by Qiagen RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix Two-Cycle cDNA Synthesis Protocol from the GeneChip
| Sample_label_protocol_ch1 | Expression Analysis Technical Manual (P/N 702232, Rev. 2) was used
| Sample_hyb_protocol | GeneChip Hybridization, Wash and Stain Kit was used (Affymetrix, P/N 900720). Hybridization performed in GeneChip Hybridization Oven 640 for 16 hrs at 45C, with 60rpm rotation. Washing and staining performed in Fluidics Station 450 according to the EukGE-WS2v4 protocol.
| Sample_scan_protocol | Scanning performed on Agilent G2500A Gene Array Scanner.
| Sample_data_processing | MAS 5.0 values generated from CEL files images in Expression Console
| Sample_platform_id | GPL339
| Sample_contact_name | Frank,A,Middleton
| Sample_contact_email | middletf@upstate.edu
| Sample_contact_phone | 315-464-7721
| Sample_contact_department | Neuroscience and Physiology
| Sample_contact_institute | SUNY Upstate Medical Univ
| Sample_contact_address | 750 East Adams St
| Sample_contact_city | Syracuse
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 13210
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318553/suppl/GSM318553.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318553/suppl/GSM318553.CHP.gz
| Sample_series_id | GSE12687
| Sample_data_row_count | 22690
| |
|
GSM318554 | GPL339 |
|
KO_Gap43_Repl2
|
Mouse barrel cortex
|
This sample is 1 of 3 knockout (KO) mouse samples prepared from postnatal day 5 C57BL/6 barrel cortex.
|
A total of 9 postnatal day 5 C57BL/6 Wildtype (WT), Heterozygous (HZ), or Knockout (KO) mice (n=3/genotype) for the GAP-43 gene were used. See Maier et al. (1999) [PMID: 10430954] for details on the generation of the mouse lines.
|
Sample_geo_accession | GSM318554
| Sample_status | Public on Jun 01 2009
| Sample_submission_date | Sep 05 2008
| Sample_last_update_date | Feb 20 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser microdissection of layer IV from barrel cortex, followed by Qiagen RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix Two-Cycle cDNA Synthesis Protocol from the GeneChip
| Sample_label_protocol_ch1 | Expression Analysis Technical Manual (P/N 702232, Rev. 2) was used
| Sample_hyb_protocol | GeneChip Hybridization, Wash and Stain Kit was used (Affymetrix, P/N 900720). Hybridization performed in GeneChip Hybridization Oven 640 for 16 hrs at 45C, with 60rpm rotation. Washing and staining performed in Fluidics Station 450 according to the EukGE-WS2v4 protocol.
| Sample_scan_protocol | Scanning performed on Agilent G2500A Gene Array Scanner.
| Sample_data_processing | MAS 5.0 values generated from CEL files images in Expression Console
| Sample_platform_id | GPL339
| Sample_contact_name | Frank,A,Middleton
| Sample_contact_email | middletf@upstate.edu
| Sample_contact_phone | 315-464-7721
| Sample_contact_department | Neuroscience and Physiology
| Sample_contact_institute | SUNY Upstate Medical Univ
| Sample_contact_address | 750 East Adams St
| Sample_contact_city | Syracuse
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 13210
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318554/suppl/GSM318554.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318554/suppl/GSM318554.CHP.gz
| Sample_series_id | GSE12687
| Sample_data_row_count | 22690
| |
|
GSM318555 | GPL339 |
|
KO_Gap43_Repl3
|
Mouse barrel cortex
|
This sample is 1 of 3 knockout (KO) mouse samples prepared from postnatal day 5 C57BL/6 barrel cortex.
|
A total of 9 postnatal day 5 C57BL/6 Wildtype (WT), Heterozygous (HZ), or Knockout (KO) mice (n=3/genotype) for the GAP-43 gene were used. See Maier et al. (1999) [PMID: 10430954] for details on the generation of the mouse lines.
|
Sample_geo_accession | GSM318555
| Sample_status | Public on Jun 01 2009
| Sample_submission_date | Sep 05 2008
| Sample_last_update_date | Feb 20 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser microdissection of layer IV from barrel cortex, followed by Qiagen RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix Two-Cycle cDNA Synthesis Protocol from the GeneChip
| Sample_label_protocol_ch1 | Expression Analysis Technical Manual (P/N 702232, Rev. 2) was used
| Sample_hyb_protocol | GeneChip Hybridization, Wash and Stain Kit was used (Affymetrix, P/N 900720). Hybridization performed in GeneChip Hybridization Oven 640 for 16 hrs at 45C, with 60rpm rotation. Washing and staining performed in Fluidics Station 450 according to the EukGE-WS2v4 protocol.
| Sample_scan_protocol | Scanning performed on Agilent G2500A Gene Array Scanner.
| Sample_data_processing | MAS 5.0 values generated from CEL files images in Expression Console
| Sample_platform_id | GPL339
| Sample_contact_name | Frank,A,Middleton
| Sample_contact_email | middletf@upstate.edu
| Sample_contact_phone | 315-464-7721
| Sample_contact_department | Neuroscience and Physiology
| Sample_contact_institute | SUNY Upstate Medical Univ
| Sample_contact_address | 750 East Adams St
| Sample_contact_city | Syracuse
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 13210
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318555/suppl/GSM318555.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318555/suppl/GSM318555.CHP.gz
| Sample_series_id | GSE12687
| Sample_data_row_count | 22690
| |
|
GSM318556 | GPL339 |
|
WT_Gap43_Repl1
|
Mouse barrel cortex
|
This sample is 1 of 3 wildtype (WT) mouse samples prepared from postnatal day 5 C57BL/6 barrel cortex.
|
A total of 9 postnatal day 5 C57BL/6 Wildtype (WT), Heterozygous (HZ), or Knockout (KO) mice (n=3/genotype) for the GAP-43 gene were used. See Maier et al. (1999) [PMID: 10430954] for details on the generation of the mouse lines.
|
Sample_geo_accession | GSM318556
| Sample_status | Public on Jun 01 2009
| Sample_submission_date | Sep 05 2008
| Sample_last_update_date | Feb 20 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser microdissection of layer IV from barrel cortex, followed by Qiagen RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix Two-Cycle cDNA Synthesis Protocol from the GeneChip
| Sample_label_protocol_ch1 | Expression Analysis Technical Manual (P/N 702232, Rev. 2) was used
| Sample_hyb_protocol | GeneChip Hybridization, Wash and Stain Kit was used (Affymetrix, P/N 900720). Hybridization performed in GeneChip Hybridization Oven 640 for 16 hrs at 45C, with 60rpm rotation. Washing and staining performed in Fluidics Station 450 according to the EukGE-WS2v4 protocol.
| Sample_scan_protocol | Scanning performed on Agilent G2500A Gene Array Scanner.
| Sample_data_processing | MAS 5.0 values generated from CEL files images in Expression Console
| Sample_platform_id | GPL339
| Sample_contact_name | Frank,A,Middleton
| Sample_contact_email | middletf@upstate.edu
| Sample_contact_phone | 315-464-7721
| Sample_contact_department | Neuroscience and Physiology
| Sample_contact_institute | SUNY Upstate Medical Univ
| Sample_contact_address | 750 East Adams St
| Sample_contact_city | Syracuse
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 13210
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318556/suppl/GSM318556.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318556/suppl/GSM318556.CHP.gz
| Sample_series_id | GSE12687
| Sample_data_row_count | 22690
| |
|
GSM318557 | GPL339 |
|
WT_Gap43_Repl2
|
Mouse barrel cortex
|
This sample is 1 of 3 wildtype (WT) mouse samples prepared from postnatal day 5 C57BL/6 barrel cortex.
|
A total of 9 postnatal day 5 C57BL/6 Wildtype (WT), Heterozygous (HZ), or Knockout (KO) mice (n=3/genotype) for the GAP-43 gene were used. See Maier et al. (1999) [PMID: 10430954] for details on the generation of the mouse lines.
|
Sample_geo_accession | GSM318557
| Sample_status | Public on Jun 01 2009
| Sample_submission_date | Sep 05 2008
| Sample_last_update_date | Feb 20 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser microdissection of layer IV from barrel cortex, followed by Qiagen RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix Two-Cycle cDNA Synthesis Protocol from the GeneChip
| Sample_label_protocol_ch1 | Expression Analysis Technical Manual (P/N 702232, Rev. 2) was used
| Sample_hyb_protocol | GeneChip Hybridization, Wash and Stain Kit was used (Affymetrix, P/N 900720). Hybridization performed in GeneChip Hybridization Oven 640 for 16 hrs at 45C, with 60rpm rotation. Washing and staining performed in Fluidics Station 450 according to the EukGE-WS2v4 protocol.
| Sample_scan_protocol | Scanning performed on Agilent G2500A Gene Array Scanner.
| Sample_data_processing | MAS 5.0 values generated from CEL files images in Expression Console
| Sample_platform_id | GPL339
| Sample_contact_name | Frank,A,Middleton
| Sample_contact_email | middletf@upstate.edu
| Sample_contact_phone | 315-464-7721
| Sample_contact_department | Neuroscience and Physiology
| Sample_contact_institute | SUNY Upstate Medical Univ
| Sample_contact_address | 750 East Adams St
| Sample_contact_city | Syracuse
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 13210
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318557/suppl/GSM318557.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318557/suppl/GSM318557.CHP.gz
| Sample_series_id | GSE12687
| Sample_data_row_count | 22690
| |
|
GSM318558 | GPL339 |
|
WT_Gap43_Repl3
|
Mouse barrel cortex
|
This sample is 1 of 3 wildtype (WT) mouse samples prepared from postnatal day 5 C57BL/6 barrel cortex.
|
A total of 9 postnatal day 5 C57BL/6 Wildtype (WT), Heterozygous (HZ), or Knockout (KO) mice (n=3/genotype) for the GAP-43 gene were used. See Maier et al. (1999) [PMID: 10430954] for details on the generation of the mouse lines.
|
Sample_geo_accession | GSM318558
| Sample_status | Public on Jun 01 2009
| Sample_submission_date | Sep 05 2008
| Sample_last_update_date | Feb 20 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Laser microdissection of layer IV from barrel cortex, followed by Qiagen RNeasy
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix Two-Cycle cDNA Synthesis Protocol from the GeneChip
| Sample_label_protocol_ch1 | Expression Analysis Technical Manual (P/N 702232, Rev. 2) was used
| Sample_hyb_protocol | GeneChip Hybridization, Wash and Stain Kit was used (Affymetrix, P/N 900720). Hybridization performed in GeneChip Hybridization Oven 640 for 16 hrs at 45C, with 60rpm rotation. Washing and staining performed in Fluidics Station 450 according to the EukGE-WS2v4 protocol.
| Sample_scan_protocol | Scanning performed on Agilent G2500A Gene Array Scanner.
| Sample_data_processing | MAS 5.0 values generated from CEL files images in Expression Console
| Sample_platform_id | GPL339
| Sample_contact_name | Frank,A,Middleton
| Sample_contact_email | middletf@upstate.edu
| Sample_contact_phone | 315-464-7721
| Sample_contact_department | Neuroscience and Physiology
| Sample_contact_institute | SUNY Upstate Medical Univ
| Sample_contact_address | 750 East Adams St
| Sample_contact_city | Syracuse
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 13210
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318558/suppl/GSM318558.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318558/suppl/GSM318558.CHP.gz
| Sample_series_id | GSE12687
| Sample_data_row_count | 22690
| |
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