Search results for the GEO ID: GSE12707  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM318833 | GPL1261 |
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hypomorph_rep1
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hypomorph, rep1
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male thymus (7 weeks), Atg16l1 hypomorph
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The aim of this study is to survey global gene expression of total thymocytes from wild-type mice and Atg16l1 mutant (hypomorph) mice.
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| Sample_geo_accession | GSM318833
| | Sample_status | Public on Sep 10 2008
| | Sample_submission_date | Sep 09 2008
| | Sample_last_update_date | Sep 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip expression labeling protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Standard Affymetrix GCOS data processing
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ramnik,,Xavier
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge Street, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318833/suppl/GSM318833.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318833/suppl/GSM318833.CHP.gz
| | Sample_series_id | GSE12707
| | Sample_data_row_count | 45101
| | |
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GSM318835 | GPL1261 |
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hypomorph_rep2
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hypomorph, rep2
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female thymus (7 weeks), Atg16l1 hypomorph
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The aim of this study is to survey global gene expression of total thymocytes from wild-type mice and Atg16l1 mutant (hypomorph) mice.
|
| Sample_geo_accession | GSM318835
| | Sample_status | Public on Sep 10 2008
| | Sample_submission_date | Sep 09 2008
| | Sample_last_update_date | Sep 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip expression labeling protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Standard Affymetrix GCOS data processing
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ramnik,,Xavier
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge Street, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318835/suppl/GSM318835.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318835/suppl/GSM318835.CHP.gz
| | Sample_series_id | GSE12707
| | Sample_data_row_count | 45101
| | |
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GSM318837 | GPL1261 |
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control_rep1
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control, rep1
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male thymus (7 weeks), control
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The aim of this study is to survey global gene expression of total thymocytes from wild-type mice and Atg16l1 mutant (hypomorph) mice.
|
| Sample_geo_accession | GSM318837
| | Sample_status | Public on Sep 10 2008
| | Sample_submission_date | Sep 09 2008
| | Sample_last_update_date | Sep 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip expression labeling protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Standard Affymetrix GCOS data processing
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ramnik,,Xavier
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge Street, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318837/suppl/GSM318837.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318837/suppl/GSM318837.CHP.gz
| | Sample_series_id | GSE12707
| | Sample_data_row_count | 45101
| | |
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GSM318839 | GPL1261 |
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control_rep2
|
control, rep2
|
female thymus (7 weeks), control
|
The aim of this study is to survey global gene expression of total thymocytes from wild-type mice and Atg16l1 mutant (hypomorph) mice.
|
| Sample_geo_accession | GSM318839
| | Sample_status | Public on Sep 10 2008
| | Sample_submission_date | Sep 09 2008
| | Sample_last_update_date | Sep 09 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy mini kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix GeneChip expression labeling protocol
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Standard Affymetrix GCOS data processing
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ramnik,,Xavier
| | Sample_contact_institute | Massachusetts General Hospital
| | Sample_contact_address | 185 Cambridge Street, 7th Floor
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02114
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318839/suppl/GSM318839.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM318nnn/GSM318839/suppl/GSM318839.CHP.gz
| | Sample_series_id | GSE12707
| | Sample_data_row_count | 45101
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