Search results for the GEO ID: GSE12725  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM319487 | GPL1355 |
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4-S_T1655 (parental)
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T1655 (Inbred Dahl salt-sensitive (SS/Jr) rat kidney )
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Inbred Dahl salt-sensitive (SS/Jr) adult male rat; tissue: kidney
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no additional information
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| Sample_geo_accession | GSM319487
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Sep 10 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue was processed and extracted using TRIzol reagent (Invitrogen) and total RNA was purified using RNeasy columns (Qiagen) according to manufacturer's protocols.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated according to the standard Affymetrix protocol from 5 ug of total RNA (GeneChip Expression Analysis Technical Manual; Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hours at 45C on the GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450 using Fluidics Script EukGE-WS2v5.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with the Affymetrix GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling to a target intensity value of 500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Norman,H,Lee
| | Sample_contact_email | phmnhl@gwumc.edu
| | Sample_contact_department | Pharmacology & Physiology
| | Sample_contact_institute | The George Washington University Medical Center
| | Sample_contact_address | 2300 I Street, N.W.
| | Sample_contact_city | Washington, DC
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319487/suppl/GSM319487.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319487/suppl/GSM319487.CHP.gz
| | Sample_series_id | GSE12725
| | Sample_series_id | GSE12869
| | Sample_data_row_count | 31099
| | |
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GSM319488 | GPL1355 |
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13-S_T1628 (parental)
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T1628 (Inbred Dahl salt-sensitive (SS/Jr) rat kidney )
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Inbred Dahl salt-sensitive (SS/Jr) adult male rat; tissue: kidney
|
no additional information
|
| Sample_geo_accession | GSM319488
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Sep 10 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue was processed and extracted using TRIzol reagent (Invitrogen) and total RNA was purified using RNeasy columns (Qiagen) according to manufacturer's protocols.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated according to the standard Affymetrix protocol from 5 ug of total RNA (GeneChip Expression Analysis Technical Manual; Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hours at 45C on the GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450 using Fluidics Script EukGE-WS2v5.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with the Affymetrix GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling to a target intensity value of 500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Norman,H,Lee
| | Sample_contact_email | phmnhl@gwumc.edu
| | Sample_contact_department | Pharmacology & Physiology
| | Sample_contact_institute | The George Washington University Medical Center
| | Sample_contact_address | 2300 I Street, N.W.
| | Sample_contact_city | Washington, DC
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319488/suppl/GSM319488.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319488/suppl/GSM319488.CHP.gz
| | Sample_series_id | GSE12725
| | Sample_series_id | GSE12869
| | Sample_data_row_count | 31099
| | |
|
GSM319489 | GPL1355 |
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14-S_T1626 (parental)
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T1626 (Inbred Dahl salt-sensitive (SS/Jr) rat kidney )
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Inbred Dahl salt-sensitive (SS/Jr) adult male rat; tissue: kidney
|
no additional information
|
| Sample_geo_accession | GSM319489
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Sep 10 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue was processed and extracted using TRIzol reagent (Invitrogen) and total RNA was purified using RNeasy columns (Qiagen) according to manufacturer's protocols.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated according to the standard Affymetrix protocol from 5 ug of total RNA (GeneChip Expression Analysis Technical Manual; Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hours at 45C on the GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450 using Fluidics Script EukGE-WS2v5.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with the Affymetrix GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling to a target intensity value of 500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Norman,H,Lee
| | Sample_contact_email | phmnhl@gwumc.edu
| | Sample_contact_department | Pharmacology & Physiology
| | Sample_contact_institute | The George Washington University Medical Center
| | Sample_contact_address | 2300 I Street, N.W.
| | Sample_contact_city | Washington, DC
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319489/suppl/GSM319489.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319489/suppl/GSM319489.CHP.gz
| | Sample_series_id | GSE12725
| | Sample_series_id | GSE12869
| | Sample_data_row_count | 31099
| | |
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GSM319491 | GPL1355 |
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9-D1MCO4x1x3Bx1_8090 (congenic)
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8090 (Congenic S.LEW.D1MCO4x1x3Bx1 rat kidney)
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Congenic S.LEW.D1MCO4x1x3Bx1 adult male rat; tissue: kidney
|
no additional information
|
| Sample_geo_accession | GSM319491
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Sep 10 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue was processed and extracted using TRIzol reagent (Invitrogen) and total RNA was purified using RNeasy columns (Qiagen) according to manufacturer's protocols.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated according to the standard Affymetrix protocol from 5 ug of total RNA (GeneChip Expression Analysis Technical Manual; Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hours at 45C on the GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450 using Fluidics Script EukGE-WS2v5.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with the Affymetrix GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling to a target intensity value of 500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Norman,H,Lee
| | Sample_contact_email | phmnhl@gwumc.edu
| | Sample_contact_department | Pharmacology & Physiology
| | Sample_contact_institute | The George Washington University Medical Center
| | Sample_contact_address | 2300 I Street, N.W.
| | Sample_contact_city | Washington, DC
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319491/suppl/GSM319491.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319491/suppl/GSM319491.CHP.gz
| | Sample_series_id | GSE12725
| | Sample_series_id | GSE12869
| | Sample_data_row_count | 31099
| | |
|
GSM319492 | GPL1355 |
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15-D1MCO4x1x3Bx1_8051 (congenic)
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8051(Congenic S.LEW.D1MCO4x1x3Bx1 rat kidney)
|
Congenic S.LEW.D1MCO4x1x3Bx1 adult male rat; tissue: kidney
|
no additional information
|
| Sample_geo_accession | GSM319492
| | Sample_status | Public on Nov 01 2008
| | Sample_submission_date | Sep 10 2008
| | Sample_last_update_date | Sep 19 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Tissue was processed and extracted using TRIzol reagent (Invitrogen) and total RNA was purified using RNeasy columns (Qiagen) according to manufacturer's protocols.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was generated according to the standard Affymetrix protocol from 5 ug of total RNA (GeneChip Expression Analysis Technical Manual; Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 ug of cRNA were hybridized for 16 hours at 45C on the GeneChip Rat Genome 230 2.0 Array. GeneChips were washed and stained on the Affymetrix Fluidics Station 450 using Fluidics Script EukGE-WS2v5.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with the Affymetrix GeneChip Operating Software 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling to a target intensity value of 500.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Norman,H,Lee
| | Sample_contact_email | phmnhl@gwumc.edu
| | Sample_contact_department | Pharmacology & Physiology
| | Sample_contact_institute | The George Washington University Medical Center
| | Sample_contact_address | 2300 I Street, N.W.
| | Sample_contact_city | Washington, DC
| | Sample_contact_state | DC
| | Sample_contact_zip/postal_code | 20037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319492/suppl/GSM319492.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319492/suppl/GSM319492.CHP.gz
| | Sample_series_id | GSE12725
| | Sample_series_id | GSE12869
| | Sample_data_row_count | 31099
| | |
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