Search results for the GEO ID: GSE12755  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM319999 | GPL1355 |
|
Right atria shunt rep1 (set 2)
|
Right atrial tissue following 28 days aorto-caval shunt operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM319999
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM319nnn/GSM319999/suppl/GSM319999.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
|
GSM320000 | GPL1355 |
|
Right atria shunt rep2 (set 2)
|
Right atrial tissue following 28 days aorto-caval shunt operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM320000
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320000/suppl/GSM320000.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
|
GSM320001 | GPL1355 |
|
Right atria shunt rep3 (set 2)
|
Right atrial tissue following 28 days aorto-caval shunt operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM320001
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320001/suppl/GSM320001.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
|
GSM320002 | GPL1355 |
|
Right atria sham rep1 (set 2)
|
Right atrial tissue following 28 days aorto-caval sham operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM320002
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320002/suppl/GSM320002.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
|
GSM320003 | GPL1355 |
|
Right atria sham rep2 (set 2)
|
Right atrial tissue following 28 days aorto-caval sham operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM320003
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320003/suppl/GSM320003.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
|
GSM320004 | GPL1355 |
|
Right atria sham rep3 (set 2)
|
Right atrial tissue following 28 days aorto-caval sham operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM320004
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320004/suppl/GSM320004.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
|
GSM320005 | GPL1355 |
|
Left atria shunt rep1 (set 2)
|
Left atrial tissue following 28 days aorto-caval shunt operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM320005
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320005/suppl/GSM320005.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
|
GSM320006 | GPL1355 |
|
Left atria shunt rep2 (set 2)
|
Left atrial tissue following 28 days aorto-caval shunt operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM320006
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320006/suppl/GSM320006.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
|
GSM320007 | GPL1355 |
|
Left atria shunt rep3 (set 2)
|
Left atrial tissue following 28 days aorto-caval shunt operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM320007
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320007/suppl/GSM320007.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
|
GSM320008 | GPL1355 |
|
Left atria sham rep1 (set 2)
|
Left atrial tissue following 28 days aorto-caval sham operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM320008
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320008/suppl/GSM320008.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
|
GSM320009 | GPL1355 |
|
Left atria sham rep2 (set 2)
|
Left atrial tissue following 28 days aorto-caval sham operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
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n/a
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| Sample_geo_accession | GSM320009
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320009/suppl/GSM320009.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
| | |
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GSM320010 | GPL1355 |
|
Left atria sham rep3 (set 2)
|
Left atrial tissue following 28 days aorto-caval sham operation
|
Strain: Sprague-Dawley; Gender: male; Weight: 225-275 g; Tissue: Heart atria and ventricles
|
n/a
|
| Sample_geo_accession | GSM320010
| | Sample_status | Public on Aug 01 2010
| | Sample_submission_date | Sep 12 2008
| | Sample_last_update_date | Aug 24 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Tissue was obtained from Sprague Dawley rats, sacrificed by decapitation. The tissue was snap-frozen in liquid nitrogen and stored at -80 ºC until RNA extraction
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen mini columns according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | A total of 20 ug of fragmented cRNA was hybridized to each GeneChip® Rat Genome 230 2.0 array. After 16 hours of incubation at 45 C, the GeneChips® were washed and stained with Streptavidin- phycoerythrin biotinylated anti-streptavidin antibody in the Affymetrix GeneChip® Fluidics Station 400
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® 3000 Scanner
| | Sample_data_processing | The data was analyzed with Robust Multiple-Array Averaging (RMA) which uses a model based background correction, quantile normalization and robust averaging expression summary method.
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Adolfo,J,de Bold
| | Sample_contact_email | adebold@ottawaheart.ca
| | Sample_contact_phone | (613) 761-4265
| | Sample_contact_fax | (613) 761-1597
| | Sample_contact_department | Cardiovascular Endocrinology
| | Sample_contact_institute | University of Ottawa Heart Institute
| | Sample_contact_address | 40 Ruskin St.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1Y 4W7
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM320nnn/GSM320010/suppl/GSM320010.CEL.gz
| | Sample_series_id | GSE12755
| | Sample_series_id | GSE12758
| | Sample_data_row_count | 31099
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