Search results for the GEO ID: GSE12806  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM321605 | GPL570 |
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non infected MOCK control (1)
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non infected MOCK control
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infection: control
tissue: Dendritic cells derived from human monocytes
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non infected MOCK control (1)
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| Sample_geo_accession | GSM321605
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Sep 16 2008
| | Sample_last_update_date | Mar 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Six days RPMI, 2% autologous human serum, IL-4, GM-CSF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321605/suppl/GSM321605.CEL.gz
| | Sample_series_id | GSE12806
| | Sample_data_row_count | 54675
| | |
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GSM321606 | GPL570 |
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non infected MOCK control (2)
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non infected MOCK control
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infection: control
tissue: Dendritic cells derived from human monocytes
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non infected MOCK control (2)
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| Sample_geo_accession | GSM321606
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Sep 16 2008
| | Sample_last_update_date | Mar 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Six days RPMI, 2% autologous human serum, IL-4, GM-CSF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321606/suppl/GSM321606.CEL.gz
| | Sample_series_id | GSE12806
| | Sample_data_row_count | 54675
| | |
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GSM321607 | GPL570 |
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Chlamydia pneumoniae infected (10)
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Chlamydia pneumoniae infected
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infection: Chlamydia pneumoniae
tissue: Dendritic cells derived from human monocytes
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Chlamydia pneumoniae infected (10)
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| Sample_geo_accession | GSM321607
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Sep 16 2008
| | Sample_last_update_date | Mar 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | C. pneumoniae infection
| | Sample_growth_protocol_ch1 | Six days RPMI, 2% autologous human serum, IL-4, GM-CSF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321607/suppl/GSM321607.CEL.gz
| | Sample_series_id | GSE12806
| | Sample_data_row_count | 54675
| | |
|
GSM321608 | GPL570 |
|
Chlamydia pneumoniae infected (12)
|
Chlamydia pneumoniae infected
|
infection: Chlamydia pneumoniae
tissue: Dendritic cells derived from human monocytes
|
Chlamydia pneumoniae infected (12)
|
| Sample_geo_accession | GSM321608
| | Sample_status | Public on Aug 21 2009
| | Sample_submission_date | Sep 16 2008
| | Sample_last_update_date | Mar 24 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | C. pneumoniae infection
| | Sample_growth_protocol_ch1 | Six days RPMI, 2% autologous human serum, IL-4, GM-CSF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321608/suppl/GSM321608.CEL.gz
| | Sample_series_id | GSE12806
| | Sample_data_row_count | 54675
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