Search results for the GEO ID: GSE12814  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM321965 | GPL570 |
|
patient 1, del(7q) fibroid
|
female with del(7q) fibroid
|
42.3% del(7q) nuclei by interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321965
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321965/suppl/GSM321965.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321966 | GPL570 |
|
patient 1, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321966
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321966/suppl/GSM321966.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321967 | GPL570 |
|
patient 1, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321967
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321967/suppl/GSM321967.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321968 | GPL570 |
|
patient 2, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321968
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321968/suppl/GSM321968.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321969 | GPL570 |
|
patient 2, del(7q) fibroid
|
female with del(7q) fibroid
|
50% del(7q) nuclei by interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321969
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321969/suppl/GSM321969.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321970 | GPL570 |
|
patient 2, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321970
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321970/suppl/GSM321970.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321971 | GPL570 |
|
patient 3, del(7q) fibroid
|
female with del(7q) fibroid
|
80% del(7q) nuclei by interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321971
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321971/suppl/GSM321971.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321972 | GPL570 |
|
patient 3, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321972
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321972/suppl/GSM321972.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321973 | GPL570 |
|
patient 3, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321973
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321973/suppl/GSM321973.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321974 | GPL570 |
|
patient 4, del(7q) fibroid
|
female with del(7q) fibroid
|
78% del(7q) nuclei by interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321974
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321974/suppl/GSM321974.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321975 | GPL570 |
|
patient 4, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321975
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321975/suppl/GSM321975.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321976 | GPL570 |
|
patient 4, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321976
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321976/suppl/GSM321976.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321977 | GPL570 |
|
patient 5, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321977
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321977/suppl/GSM321977.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321978 | GPL570 |
|
patient 5, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321978
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321978/suppl/GSM321978.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321979 | GPL570 |
|
patient 5, del(7q) fibroid
|
female with del(7q) fibroid
|
25% del(7q) nuclei by interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321979
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321979/suppl/GSM321979.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321980 | GPL570 |
|
patient 6, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321980
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321980/suppl/GSM321980.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321981 | GPL570 |
|
patient 6, del(7q) fibroid
|
female with del(7q) fibroid
|
62% del(7q) nuclei by inteprhase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321981
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321981/suppl/GSM321981.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321982 | GPL570 |
|
patient 6, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321982
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321982/suppl/GSM321982.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321983 | GPL570 |
|
patient 7, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321983
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321983/suppl/GSM321983.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321984 | GPL570 |
|
patient 7, del(7q) fibroid
|
female with del(7q) fibroid
|
52% del(7q) nuclei by interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321984
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321984/suppl/GSM321984.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321985 | GPL570 |
|
patient 7, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on intephase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321985
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321985/suppl/GSM321985.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321986 | GPL570 |
|
patient 8, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321986
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321986/suppl/GSM321986.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321987 | GPL570 |
|
patient 8, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321987
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321987/suppl/GSM321987.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321988 | GPL570 |
|
patient 8, del(7q) fibroid
|
female with del(7q) fibroid
|
34% del(7q) nuclei based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321988
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321988/suppl/GSM321988.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321989 | GPL570 |
|
patient 9, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321989
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321989/suppl/GSM321989.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321990 | GPL570 |
|
patient 9, del(7q) fibroid
|
female with del(7q) fibroid
|
37% del(7q) nuclei by interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321990
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321990/suppl/GSM321990.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321991 | GPL570 |
|
patient 9, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321991
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321991/suppl/GSM321991.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321992 | GPL570 |
|
patient 10, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321992
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321992/suppl/GSM321992.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321993 | GPL570 |
|
patient 10, del(7q) fibroid
|
female with del(7q) fibroid
|
12% del(7q) nuclei by interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321993
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321993/suppl/GSM321993.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321994 | GPL570 |
|
patient 10, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321994
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321994/suppl/GSM321994.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321995 | GPL570 |
|
patient 11, del(7q) fibroid
|
female with del(7q) fibroid
|
71% del(7q) nuclei by interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321995
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321995/suppl/GSM321995.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321996 | GPL570 |
|
patient 11, non-del(7q) fibroid
|
female non-del(7q) fibroid
|
sample_type: non-del(7q) fibroid based on interphase FISH
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321996
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321996/suppl/GSM321996.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
GSM321997 | GPL570 |
|
patient 11, myometrium
|
female myometrium
|
sample_type: myometrium
|
Matched del(7q) and non-del(7q) tumors identified by FISH or karyotyping from each of eleven women.
|
| Sample_geo_accession | GSM321997
| | Sample_status | Public on Aug 17 2009
| | Sample_submission_date | Sep 17 2008
| | Sample_last_update_date | Oct 21 2010
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Followed Affymetrix GeneChip Expression Analysis Technical Manual revision 4
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated according to the standard Affymetrix protocol from 5 ug total RNA (Affymetrix GeneChip Expression Analysis Technical Manual revision 4).
| | Sample_hyb_protocol | Following purification and fragmentation to reduce secondary structure, hybridization in a Model 640 hybridization chamber to GeneChip Human Genome U133 Plus 2.0 oligonucleotide expression microarrays (Affymetrix) occurred overnight at 45oC. Arrays were washed using a Model 450 Fluidics station with GeneChip Operating Software (Affymetrix).
| | Sample_scan_protocol | Microarrays were scanned using the GeneChip Model 3000 7G
| | Sample_data_processing | Probe set expression values were calculated by GeneChip software using the MAS 5.0 algorithm
| | Sample_platform_id | GPL570
| | Sample_contact_name | Jennelle,,Hodge
| | Sample_contact_email | hodge.jennelle@mayo.edu
| | Sample_contact_phone | 507-266-5203
| | Sample_contact_fax | 507-284-0043
| | Sample_contact_department | Department of Laboratory Medicine and Pathology
| | Sample_contact_institute | Mayo Clinic
| | Sample_contact_address | 200 First Street SW
| | Sample_contact_city | Rochester
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55905
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM321nnn/GSM321997/suppl/GSM321997.CEL.gz
| | Sample_series_id | GSE12814
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
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