Search results for the GEO ID: GSE12908  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM323972 | GPL1261 |
|
ASO-30a BMEL 1
|
BMELs, transfected with LNA oligo
|
Cell line derived from fetal mouse liver
BMELs grown under growth conditions
|
BMEL gene expression data
|
| Sample_geo_accession | GSM323972
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Sep 23 2008
| | Sample_last_update_date | Sep 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Oligofectamine transfection
| | Sample_growth_protocol_ch1 | Grown under growth conditions as described in PMID: 12297826
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM323nnn/GSM323972/suppl/GSM323972.CEL.gz
| | Sample_series_id | GSE12908
| | Sample_data_row_count | 45101
| | |
|
GSM323973 | GPL1261 |
|
ASO-30a BMEL 2
|
BMELs, transfected with LNA oligo
|
Cell line derived from fetal mouse liver
BMELs grown under growth conditions
|
BMEL gene expression data
|
| Sample_geo_accession | GSM323973
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Sep 23 2008
| | Sample_last_update_date | Sep 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Oligofectamine transfection
| | Sample_growth_protocol_ch1 | Grown under growth conditions as described in PMID: 12297826
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM323nnn/GSM323973/suppl/GSM323973.CEL.gz
| | Sample_series_id | GSE12908
| | Sample_data_row_count | 45101
| | |
|
GSM323974 | GPL1261 |
|
ASO-30a BMEL 3
|
BMELs, transfected with LNA oligo
|
Cell line derived from fetal mouse liver
BMELs grown under growth conditions
|
BMEL gene expression data
|
| Sample_geo_accession | GSM323974
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Sep 23 2008
| | Sample_last_update_date | Sep 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Oligofectamine transfection
| | Sample_growth_protocol_ch1 | Grown under growth conditions as described in PMID: 12297826
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM323nnn/GSM323974/suppl/GSM323974.CEL.gz
| | Sample_series_id | GSE12908
| | Sample_data_row_count | 45101
| | |
|
GSM323975 | GPL1261 |
|
ASO-30a BMEL 4
|
BMELs, transfected with LNA oligo
|
Cell line derived from fetal mouse liver
BMELs grown under growth conditions
|
BMEL gene expression data
|
| Sample_geo_accession | GSM323975
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Sep 23 2008
| | Sample_last_update_date | Sep 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Oligofectamine transfection
| | Sample_growth_protocol_ch1 | Grown under growth conditions as described in PMID: 12297826
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM323nnn/GSM323975/suppl/GSM323975.CEL.gz
| | Sample_series_id | GSE12908
| | Sample_data_row_count | 45101
| | |
|
GSM323976 | GPL1261 |
|
ASO-30a BMEL 5
|
BMELs, transfected with LNA oligo
|
Cell line derived from fetal mouse liver
BMELs grown under growth conditions
|
BMEL gene expression data
|
| Sample_geo_accession | GSM323976
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Sep 23 2008
| | Sample_last_update_date | Sep 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Oligofectamine transfection
| | Sample_growth_protocol_ch1 | Grown under growth conditions as described in PMID: 12297826
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM323nnn/GSM323976/suppl/GSM323976.CEL.gz
| | Sample_series_id | GSE12908
| | Sample_data_row_count | 45101
| | |
|
GSM323977 | GPL1261 |
|
Scrambled BMEL 1
|
BMELs, transfected with LNA oligo
|
Cell line derived from fetal mouse liver
BMELs grown under growth conditions
|
BMEL gene expression data
|
| Sample_geo_accession | GSM323977
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Sep 23 2008
| | Sample_last_update_date | Sep 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Oligofectamine transfection
| | Sample_growth_protocol_ch1 | Grown under growth conditions as described in PMID: 12297826
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM323nnn/GSM323977/suppl/GSM323977.CEL.gz
| | Sample_series_id | GSE12908
| | Sample_data_row_count | 45101
| | |
|
GSM323978 | GPL1261 |
|
Scrambled BMEL 2
|
BMELs, transfected with LNA oligo
|
Cell line derived from fetal mouse liver
BMELs grown under growth conditions
|
BMEL gene expression data
|
| Sample_geo_accession | GSM323978
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Sep 23 2008
| | Sample_last_update_date | Sep 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Oligofectamine transfection
| | Sample_growth_protocol_ch1 | Grown under growth conditions as described in PMID: 12297826
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM323nnn/GSM323978/suppl/GSM323978.CEL.gz
| | Sample_series_id | GSE12908
| | Sample_data_row_count | 45101
| | |
|
GSM323979 | GPL1261 |
|
Scrambled BMEL 3
|
BMELs, transfected with LNA oligo
|
Cell line derived from fetal mouse liver
BMELs grown under growth conditions
|
BMEL gene expression data
|
| Sample_geo_accession | GSM323979
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Sep 23 2008
| | Sample_last_update_date | Sep 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Oligofectamine transfection
| | Sample_growth_protocol_ch1 | Grown under growth conditions as described in PMID: 12297826
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM323nnn/GSM323979/suppl/GSM323979.CEL.gz
| | Sample_series_id | GSE12908
| | Sample_data_row_count | 45101
| | |
|
GSM323980 | GPL1261 |
|
Scrambled BMEL 4
|
BMELs, transfected with LNA oligo
|
Cell line derived from fetal mouse liver
BMELs grown under growth conditions
|
BMEL gene expression data
|
| Sample_geo_accession | GSM323980
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Sep 23 2008
| | Sample_last_update_date | Sep 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Oligofectamine transfection
| | Sample_growth_protocol_ch1 | Grown under growth conditions as described in PMID: 12297826
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM323nnn/GSM323980/suppl/GSM323980.CEL.gz
| | Sample_series_id | GSE12908
| | Sample_data_row_count | 45101
| | |
|
GSM323981 | GPL1261 |
|
Scrambled BMEL 5
|
BMELs, transfected with LNA oligo
|
Cell line derived from fetal mouse liver
BMELs grown under growth conditions
|
BMEL gene expression data
|
| Sample_geo_accession | GSM323981
| | Sample_status | Public on Dec 31 2008
| | Sample_submission_date | Sep 23 2008
| | Sample_last_update_date | Sep 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Oligofectamine transfection
| | Sample_growth_protocol_ch1 | Grown under growth conditions as described in PMID: 12297826
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | mirVana™ miRNA Isolation Kit (Ambion)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | 100ng of total RNA per sample was amplified and biotinylated using the MessageAmp Premier kit (Ambion)
| | Sample_hyb_protocol | The hybridization was performed according to the Affymatrix manual using a Tecan HS4800 hybridization station (Tecan, Austria)
| | Sample_scan_protocol | Slides were scanned by a ScanArray 4000 XL scanner (Packard Biochip Technologies, USA)
| | Sample_data_processing | Image analysis was carried out using the ImaGene 6.1.0 software (BioDiscovery, Inc., USA)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joshua,,Friedman
| | Sample_contact_email | friedmaj@mail.med.upenn.edu
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | University of Pennsylvania School of Medicine
| | Sample_contact_address | ARC 1007B, 3615 Civic Center Blvd.
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM323nnn/GSM323981/suppl/GSM323981.CEL.gz
| | Sample_series_id | GSE12908
| | Sample_data_row_count | 45101
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