Search results for the GEO ID: GSE12917  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM324070 | GPL570 |
|
76N1
|
Normal human mammary epithelial cells
|
Reduction mammoplasty
|
Gene expression data from normal human mammary epithelial cells
|
| Sample_geo_accession | GSM324070
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324070/suppl/GSM324070.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
| | |
|
GSM324071 | GPL570 |
|
76N2
|
Normal human mammary epithelial cells
|
Reduction mammoplasty
|
Gene expression data from normal human mammary epithelial cells
|
| Sample_geo_accession | GSM324071
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324071/suppl/GSM324071.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
| | |
|
GSM324072 | GPL570 |
|
76N3
|
Normal human mammary epithelial cells
|
Reduction mammoplasty
|
Gene expression data from normal human mammary epithelial cells
|
| Sample_geo_accession | GSM324072
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324072/suppl/GSM324072.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
| | |
|
GSM324073 | GPL570 |
|
76N RhoA WT1
|
Wild type RhoA immortalized human mammary epithelial cells
|
Reduction mammoplasty
|
Gene expression data from wild type RhoA immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM324073
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324073/suppl/GSM324073.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
| | |
|
GSM324074 | GPL570 |
|
76N RhoA WT2
|
Wild type RhoA immortalized human mammary epithelial cells
|
Reduction mammoplasty
|
Gene expression data from wild type RhoA immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM324074
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324074/suppl/GSM324074.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
| | |
|
GSM324075 | GPL570 |
|
76N RhoA WT3
|
Wild type RhoA immortalized human mammary epithelial cells
|
Reduction mammoplasty
|
Gene expression data from wild type RhoA immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM324075
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324075/suppl/GSM324075.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
| | |
|
GSM324076 | GPL570 |
|
76N RhoA G14V1
|
Constitutively active form of RhoA ( G14V) immortalized human mammary epithelial cells
|
Reduction mammoplasty
|
gene expression data from constitutively active form of RhoA ( G14V) immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM324076
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324076/suppl/GSM324076.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
| | |
|
GSM324077 | GPL570 |
|
76N RhoA G14V2
|
Constitutively active form of RhoA ( G14V) immortalized human mammary epithelial cells
|
Reduction mammoplasty
|
gene expression data from constitutively active form of RhoA ( G14V) immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM324077
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324077/suppl/GSM324077.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
| | |
|
GSM324079 | GPL570 |
|
76N RhoA T37A1
|
Mutant RhoA (T37A) immortalized human mammary epithelial cells
|
Reduction mammoplasty
|
gene expression data from mutant RhoA ( T37A) immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM324079
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324079/suppl/GSM324079.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
| | |
|
GSM324080 | GPL570 |
|
76N RhoA T37A2
|
Mutant RhoA (T37A) immortalized human mammary epithelial cells
|
Reduction mammoplasty
|
gene expression data from mutant RhoA ( T37A) immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM324080
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324080/suppl/GSM324080.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
| | |
|
GSM324081 | GPL570 |
|
76N RhoA T37A3
|
Mutant RhoA (T37A) immortalized human mammary epithelial cells
|
Reduction mammoplasty
|
gene expression data from mutant RhoA ( T37A) immortalized human mammary epithelial cells
|
| Sample_geo_accession | GSM324081
| | Sample_status | Public on Sep 26 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Sep 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment. Logarithmically growing cells were collected for RNA extraction.
| | Sample_growth_protocol_ch1 | Reduction mammoplasty-derived human mammary epithelial cell strains, 76N and RhoA immortalized 76N cells were grown in the DFCI-1 medium
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.For each cell line, RNA was isolated in three independent experiments.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,,Lin
| | Sample_contact_email | s-lin2@northwestern.edu
| | Sample_contact_phone | 312-695-1331
| | Sample_contact_department | Bioinformatics Core
| | Sample_contact_institute | Northwestern University
| | Sample_contact_address |
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324081/suppl/GSM324081.CEL.gz
| | Sample_series_id | GSE12917
| | Sample_data_row_count | 54675
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