Search results for the GEO ID: GSE12921  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM324120 | GPL8300 |
|
144_PGL2
|
head and neck paraganglioma
|
Mutation: PGL2
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324120
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324120/suppl/GSM324120.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324121 | GPL8300 |
|
N7543_PGL2
|
head and neck paraganglioma
|
Mutation: PGL2
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324121
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324121/suppl/GSM324121.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324122 | GPL8300 |
|
N7544_PGL2
|
head and neck paraganglioma
|
Mutation: PGL2
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324122
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324122/suppl/GSM324122.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324123 | GPL8300 |
|
N9357_PGL2
|
head and neck paraganglioma
|
Mutation: PGL2
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324123
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324123/suppl/GSM324123.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324124 | GPL8300 |
|
173_SDHD
|
head and neck paraganglioma
|
Mutation: SDHD
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324124
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324124/suppl/GSM324124.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324125 | GPL8300 |
|
174_SDHD
|
head and neck paraganglioma
|
Mutation: SDHD
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324125
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324125/suppl/GSM324125.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324126 | GPL8300 |
|
184_SDHD
|
head and neck paraganglioma
|
Mutation: SDHD
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324126
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324126/suppl/GSM324126.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324127 | GPL8300 |
|
185_SDHD
|
head and neck paraganglioma
|
Mutation: SDHD
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324127
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324127/suppl/GSM324127.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324128 | GPL8300 |
|
200_SDHD
|
head and neck paraganglioma
|
Mutation: SDHD
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324128
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324128/suppl/GSM324128.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324129 | GPL8300 |
|
201_SDHD
|
head and neck paraganglioma
|
Mutation: SDHD
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324129
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324129/suppl/GSM324129.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324130 | GPL8300 |
|
137_SPOR
|
head and neck paraganglioma
|
Mutation: SPOR
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324130
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324130/suppl/GSM324130.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324131 | GPL8300 |
|
170_SPOR
|
head and neck paraganglioma
|
Mutation: SPOR
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324131
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324131/suppl/GSM324131.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324132 | GPL8300 |
|
177_SPOR
|
head and neck paraganglioma
|
Mutation: SPOR
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324132
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324132/suppl/GSM324132.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324133 | GPL8300 |
|
189_SPOR
|
head and neck paraganglioma
|
Mutation: SPOR
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324133
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324133/suppl/GSM324133.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324134 | GPL8300 |
|
199_SPOR
|
head and neck paraganglioma
|
Mutation: SPOR
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324134
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324134/suppl/GSM324134.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324135 | GPL8300 |
|
217_SPOR
|
head and neck paraganglioma
|
Mutation: SPOR
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324135
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324135/suppl/GSM324135.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
|
GSM324136 | GPL8300 |
|
220_SPOR
|
head and neck paraganglioma
|
Mutation: SPOR
|
Gene expression data from paraganglioma
|
| Sample_geo_accession | GSM324136
| | Sample_status | Public on Dec 10 2008
| | Sample_submission_date | Sep 24 2008
| | Sample_last_update_date | Mar 16 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix hu95a v2 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data files of all arrays were normalized using sequence information in Robust Multi_Chip Average (RMA) method.
| | Sample_platform_id | GPL8300
| | Sample_contact_name | Jan,,Oosting
| | Sample_contact_phone | +31 71 5266619
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Leiden University Medical Center
| | Sample_contact_address | Albinusdreef 2
| | Sample_contact_city | Leiden
| | Sample_contact_zip/postal_code | 2333ZA
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324136/suppl/GSM324136.CEL.gz
| | Sample_series_id | GSE12921
| | Sample_data_row_count | 12625
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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