Search results for the GEO ID: GSE12956 |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM324907 | GPL1261 |
|
wt ARX 1
|
ventral telencephalon
|
Arx heterozygous dams crossed with C57Bl/6 males sacrificed at E14.5
|
Three timed-pregnant Arx heterozygous dams crossed with C57Bl/6 males were sacrificed at E14.5, the embryos harvested and placed into cold PBS. After brain isolarion, meninges and olfactory bulbs were removed, and the ventral telencephalon separated from the overlying cerebral cortex. The same procedure was repeated for 5 wt and 5 Arx mutant embryos.
|
Sample_geo_accession | GSM324907
| Sample_status | Public on Feb 26 2010
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Feb 26 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA micro kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin labeled cRNAs were generated with Affymetrix kit according to manufacturer protocol
| Sample_hyb_protocol | Hybridization was done according to Affymetrix standard protocol.
| Sample_scan_protocol | GeneChips scanning was done according to Affymetrix standard protocol.
| Sample_data_processing | Microarray quality control and statistical validation were performed using Bioconductor. Background correction, normalization, and probe set intensities were obtained by means of RMA and quantile normalization.
| Sample_platform_id | GPL1261
| Sample_contact_name | Raffaele,A,Calogero
| Sample_contact_email | raffaele.calogero@unito.it
| Sample_contact_phone | ++39 0116706457
| Sample_contact_laboratory | Bioinformatics and Genomics Unit
| Sample_contact_department | Molecular Biotechnology Center
| Sample_contact_institute | University of Torino
| Sample_contact_address | Via Nizza 52
| Sample_contact_city | Torino
| Sample_contact_state | To
| Sample_contact_zip/postal_code | 10126
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324907/suppl/GSM324907.CEL.gz
| Sample_series_id | GSE12956
| Sample_data_row_count | 45101
| |
|
GSM324908 | GPL1261 |
|
wt ARX 2
|
ventral telencephalon
|
Arx heterozygous dams crossed with C57Bl/6 males sacrificed at E14.5
|
Three timed-pregnant Arx heterozygous dams crossed with C57Bl/6 males were sacrificed at E14.5, the embryos harvested and placed into cold PBS. After brain isolarion, meninges and olfactory bulbs were removed, and the ventral telencephalon separated from the overlying cerebral cortex. The same procedure was repeated for 5 wt and 5 Arx mutant embryos.
|
Sample_geo_accession | GSM324908
| Sample_status | Public on Feb 26 2010
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Feb 26 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA micro kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin labeled cRNAs were generated with Affymetrix kit according to manufacturer protocol
| Sample_hyb_protocol | Hybridization was done according to Affymetrix standard protocol.
| Sample_scan_protocol | GeneChips scanning was done according to Affymetrix standard protocol.
| Sample_data_processing | Microarray quality control and statistical validation were performed using Bioconductor. Background correction, normalization, and probe set intensities were obtained by means of RMA and quantile normalization.
| Sample_platform_id | GPL1261
| Sample_contact_name | Raffaele,A,Calogero
| Sample_contact_email | raffaele.calogero@unito.it
| Sample_contact_phone | ++39 0116706457
| Sample_contact_laboratory | Bioinformatics and Genomics Unit
| Sample_contact_department | Molecular Biotechnology Center
| Sample_contact_institute | University of Torino
| Sample_contact_address | Via Nizza 52
| Sample_contact_city | Torino
| Sample_contact_state | To
| Sample_contact_zip/postal_code | 10126
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324908/suppl/GSM324908.CEL.gz
| Sample_series_id | GSE12956
| Sample_data_row_count | 45101
| |
|
GSM324909 | GPL1261 |
|
wt ARX 5
|
ventral telencephalon
|
Arx heterozygous dams crossed with C57Bl/6 males sacrificed at E14.5
|
Three timed-pregnant Arx heterozygous dams crossed with C57Bl/6 males were sacrificed at E14.5, the embryos harvested and placed into cold PBS. After brain isolarion, meninges and olfactory bulbs were removed, and the ventral telencephalon separated from the overlying cerebral cortex. The same procedure was repeated for 5 wt and 5 Arx mutant embryos.
|
Sample_geo_accession | GSM324909
| Sample_status | Public on Feb 26 2010
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Feb 26 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA micro kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin labeled cRNAs were generated with Affymetrix kit according to manufacturer protocol
| Sample_hyb_protocol | Hybridization was done according to Affymetrix standard protocol.
| Sample_scan_protocol | GeneChips scanning was done according to Affymetrix standard protocol.
| Sample_data_processing | Microarray quality control and statistical validation were performed using Bioconductor. Background correction, normalization, and probe set intensities were obtained by means of RMA and quantile normalization.
| Sample_platform_id | GPL1261
| Sample_contact_name | Raffaele,A,Calogero
| Sample_contact_email | raffaele.calogero@unito.it
| Sample_contact_phone | ++39 0116706457
| Sample_contact_laboratory | Bioinformatics and Genomics Unit
| Sample_contact_department | Molecular Biotechnology Center
| Sample_contact_institute | University of Torino
| Sample_contact_address | Via Nizza 52
| Sample_contact_city | Torino
| Sample_contact_state | To
| Sample_contact_zip/postal_code | 10126
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324909/suppl/GSM324909.CEL.gz
| Sample_series_id | GSE12956
| Sample_data_row_count | 45101
| |
|
GSM324910 | GPL1261 |
|
wt ARX 21
|
ventral telencephalon
|
Arx heterozygous dams crossed with C57Bl/6 males sacrificed at E14.5
|
Three timed-pregnant Arx heterozygous dams crossed with C57Bl/6 males were sacrificed at E14.5, the embryos harvested and placed into cold PBS. After brain isolarion, meninges and olfactory bulbs were removed, and the ventral telencephalon separated from the overlying cerebral cortex. The same procedure was repeated for 5 wt and 5 Arx mutant embryos.
|
Sample_geo_accession | GSM324910
| Sample_status | Public on Feb 26 2010
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Feb 26 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA micro kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin labeled cRNAs were generated with Affymetrix kit according to manufacturer protocol
| Sample_hyb_protocol | Hybridization was done according to Affymetrix standard protocol.
| Sample_scan_protocol | GeneChips scanning was done according to Affymetrix standard protocol.
| Sample_data_processing | Microarray quality control and statistical validation were performed using Bioconductor. Background correction, normalization, and probe set intensities were obtained by means of RMA and quantile normalization.
| Sample_platform_id | GPL1261
| Sample_contact_name | Raffaele,A,Calogero
| Sample_contact_email | raffaele.calogero@unito.it
| Sample_contact_phone | ++39 0116706457
| Sample_contact_laboratory | Bioinformatics and Genomics Unit
| Sample_contact_department | Molecular Biotechnology Center
| Sample_contact_institute | University of Torino
| Sample_contact_address | Via Nizza 52
| Sample_contact_city | Torino
| Sample_contact_state | To
| Sample_contact_zip/postal_code | 10126
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324910/suppl/GSM324910.CEL.gz
| Sample_series_id | GSE12956
| Sample_data_row_count | 45101
| |
|
GSM324911 | GPL1261 |
|
wt ARX 22
|
ventral telencephalon
|
Arx heterozygous dams crossed with C57Bl/6 males sacrificed at E14.5
|
Three timed-pregnant Arx heterozygous dams crossed with C57Bl/6 males were sacrificed at E14.5, the embryos harvested and placed into cold PBS. After brain isolarion, meninges and olfactory bulbs were removed, and the ventral telencephalon separated from the overlying cerebral cortex. The same procedure was repeated for 5 wt and 5 Arx mutant embryos.
|
Sample_geo_accession | GSM324911
| Sample_status | Public on Feb 26 2010
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Feb 26 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA micro kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin labeled cRNAs were generated with Affymetrix kit according to manufacturer protocol
| Sample_hyb_protocol | Hybridization was done according to Affymetrix standard protocol.
| Sample_scan_protocol | GeneChips scanning was done according to Affymetrix standard protocol.
| Sample_data_processing | Microarray quality control and statistical validation were performed using Bioconductor. Background correction, normalization, and probe set intensities were obtained by means of RMA and quantile normalization.
| Sample_platform_id | GPL1261
| Sample_contact_name | Raffaele,A,Calogero
| Sample_contact_email | raffaele.calogero@unito.it
| Sample_contact_phone | ++39 0116706457
| Sample_contact_laboratory | Bioinformatics and Genomics Unit
| Sample_contact_department | Molecular Biotechnology Center
| Sample_contact_institute | University of Torino
| Sample_contact_address | Via Nizza 52
| Sample_contact_city | Torino
| Sample_contact_state | To
| Sample_contact_zip/postal_code | 10126
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324911/suppl/GSM324911.CEL.gz
| Sample_series_id | GSE12956
| Sample_data_row_count | 45101
| |
|
GSM324913 | GPL1261 |
|
mut ARX 11
|
ventral telencephalon
|
Arx heterozygous dams crossed with C57Bl/6 males sacrificed at E14.5
|
Three timed-pregnant Arx heterozygous dams crossed with C57Bl/6 males were sacrificed at E14.5, the embryos harvested and placed into cold PBS. After brain isolarion, meninges and olfactory bulbs were removed, and the ventral telencephalon separated from the overlying cerebral cortex. The same procedure was repeated for 5 wt and 5 Arx mutant embryos.
|
Sample_geo_accession | GSM324913
| Sample_status | Public on Feb 26 2010
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Feb 26 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA micro kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin labeled cRNAs were generated with Affymetrix kit according to manufacturer protocol
| Sample_hyb_protocol | Hybridization was done according to Affymetrix standard protocol.
| Sample_scan_protocol | GeneChips scanning was done according to Affymetrix standard protocol.
| Sample_data_processing | Microarray quality control and statistical validation were performed using Bioconductor. Background correction, normalization, and probe set intensities were obtained by means of RMA and quantile normalization.
| Sample_platform_id | GPL1261
| Sample_contact_name | Raffaele,A,Calogero
| Sample_contact_email | raffaele.calogero@unito.it
| Sample_contact_phone | ++39 0116706457
| Sample_contact_laboratory | Bioinformatics and Genomics Unit
| Sample_contact_department | Molecular Biotechnology Center
| Sample_contact_institute | University of Torino
| Sample_contact_address | Via Nizza 52
| Sample_contact_city | Torino
| Sample_contact_state | To
| Sample_contact_zip/postal_code | 10126
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324913/suppl/GSM324913.CEL.gz
| Sample_series_id | GSE12956
| Sample_data_row_count | 45101
| |
|
GSM324914 | GPL1261 |
|
mut ARX 12
|
ventral telencephalon
|
Arx heterozygous dams crossed with C57Bl/6 males sacrificed at E14.5
|
Three timed-pregnant Arx heterozygous dams crossed with C57Bl/6 males were sacrificed at E14.5, the embryos harvested and placed into cold PBS. After brain isolarion, meninges and olfactory bulbs were removed, and the ventral telencephalon separated from the overlying cerebral cortex. The same procedure was repeated for 5 wt and 5 Arx mutant embryos.
|
Sample_geo_accession | GSM324914
| Sample_status | Public on Feb 26 2010
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Feb 26 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA micro kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin labeled cRNAs were generated with Affymetrix kit according to manufacturer protocol
| Sample_hyb_protocol | Hybridization was done according to Affymetrix standard protocol.
| Sample_scan_protocol | GeneChips scanning was done according to Affymetrix standard protocol.
| Sample_data_processing | Microarray quality control and statistical validation were performed using Bioconductor. Background correction, normalization, and probe set intensities were obtained by means of RMA and quantile normalization.
| Sample_platform_id | GPL1261
| Sample_contact_name | Raffaele,A,Calogero
| Sample_contact_email | raffaele.calogero@unito.it
| Sample_contact_phone | ++39 0116706457
| Sample_contact_laboratory | Bioinformatics and Genomics Unit
| Sample_contact_department | Molecular Biotechnology Center
| Sample_contact_institute | University of Torino
| Sample_contact_address | Via Nizza 52
| Sample_contact_city | Torino
| Sample_contact_state | To
| Sample_contact_zip/postal_code | 10126
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324914/suppl/GSM324914.CEL.gz
| Sample_series_id | GSE12956
| Sample_data_row_count | 45101
| |
|
GSM324916 | GPL1261 |
|
mut ARX 13
|
ventral telencephalon
|
Arx heterozygous dams crossed with C57Bl/6 males sacrificed at E14.5
|
Three timed-pregnant Arx heterozygous dams crossed with C57Bl/6 males were sacrificed at E14.5, the embryos harvested and placed into cold PBS. After brain isolarion, meninges and olfactory bulbs were removed, and the ventral telencephalon separated from the overlying cerebral cortex. The same procedure was repeated for 5 wt and 5 Arx mutant embryos.
|
Sample_geo_accession | GSM324916
| Sample_status | Public on Feb 26 2010
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Feb 26 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA micro kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin labeled cRNAs were generated with Affymetrix kit according to manufacturer protocol
| Sample_hyb_protocol | Hybridization was done according to Affymetrix standard protocol.
| Sample_scan_protocol | GeneChips scanning was done according to Affymetrix standard protocol.
| Sample_data_processing | Microarray quality control and statistical validation were performed using Bioconductor. Background correction, normalization, and probe set intensities were obtained by means of RMA and quantile normalization.
| Sample_platform_id | GPL1261
| Sample_contact_name | Raffaele,A,Calogero
| Sample_contact_email | raffaele.calogero@unito.it
| Sample_contact_phone | ++39 0116706457
| Sample_contact_laboratory | Bioinformatics and Genomics Unit
| Sample_contact_department | Molecular Biotechnology Center
| Sample_contact_institute | University of Torino
| Sample_contact_address | Via Nizza 52
| Sample_contact_city | Torino
| Sample_contact_state | To
| Sample_contact_zip/postal_code | 10126
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324916/suppl/GSM324916.CEL.gz
| Sample_series_id | GSE12956
| Sample_data_row_count | 45101
| |
|
GSM324917 | GPL1261 |
|
mut ARX 14
|
ventral telencephalon
|
Arx heterozygous dams crossed with C57Bl/6 males sacrificed at E14.5
|
Three timed-pregnant Arx heterozygous dams crossed with C57Bl/6 males were sacrificed at E14.5, the embryos harvested and placed into cold PBS. After brain isolarion, meninges and olfactory bulbs were removed, and the ventral telencephalon separated from the overlying cerebral cortex. The same procedure was repeated for 5 wt and 5 Arx mutant embryos.
|
Sample_geo_accession | GSM324917
| Sample_status | Public on Feb 26 2010
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Feb 26 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA micro kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin labeled cRNAs were generated with Affymetrix kit according to manufacturer protocol
| Sample_hyb_protocol | Hybridization was done according to Affymetrix standard protocol.
| Sample_scan_protocol | GeneChips scanning was done according to Affymetrix standard protocol.
| Sample_data_processing | Microarray quality control and statistical validation were performed using Bioconductor. Background correction, normalization, and probe set intensities were obtained by means of RMA and quantile normalization.
| Sample_platform_id | GPL1261
| Sample_contact_name | Raffaele,A,Calogero
| Sample_contact_email | raffaele.calogero@unito.it
| Sample_contact_phone | ++39 0116706457
| Sample_contact_laboratory | Bioinformatics and Genomics Unit
| Sample_contact_department | Molecular Biotechnology Center
| Sample_contact_institute | University of Torino
| Sample_contact_address | Via Nizza 52
| Sample_contact_city | Torino
| Sample_contact_state | To
| Sample_contact_zip/postal_code | 10126
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324917/suppl/GSM324917.CEL.gz
| Sample_series_id | GSE12956
| Sample_data_row_count | 45101
| |
|
GSM324919 | GPL1261 |
|
mut ARX 15
|
ventral telencephalon
|
Arx heterozygous dams crossed with C57Bl/6 males sacrificed at E14.5
|
Three timed-pregnant Arx heterozygous dams crossed with C57Bl/6 males were sacrificed at E14.5, the embryos harvested and placed into cold PBS. After brain isolarion, meninges and olfactory bulbs were removed, and the ventral telencephalon separated from the overlying cerebral cortex. The same procedure was repeated for 5 wt and 5 Arx mutant embryos.
|
Sample_geo_accession | GSM324919
| Sample_status | Public on Feb 26 2010
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Feb 26 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNA micro kit (Qiagen, Valencia, CA)
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotin labeled cRNAs were generated with Affymetrix kit according to manufacturer protocol
| Sample_hyb_protocol | Hybridization was done according to Affymetrix standard protocol.
| Sample_scan_protocol | GeneChips scanning was done according to Affymetrix standard protocol.
| Sample_data_processing | Microarray quality control and statistical validation were performed using Bioconductor. Background correction, normalization, and probe set intensities were obtained by means of RMA and quantile normalization.
| Sample_platform_id | GPL1261
| Sample_contact_name | Raffaele,A,Calogero
| Sample_contact_email | raffaele.calogero@unito.it
| Sample_contact_phone | ++39 0116706457
| Sample_contact_laboratory | Bioinformatics and Genomics Unit
| Sample_contact_department | Molecular Biotechnology Center
| Sample_contact_institute | University of Torino
| Sample_contact_address | Via Nizza 52
| Sample_contact_city | Torino
| Sample_contact_state | To
| Sample_contact_zip/postal_code | 10126
| Sample_contact_country | Italy
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM324nnn/GSM324919/suppl/GSM324919.CEL.gz
| Sample_series_id | GSE12956
| Sample_data_row_count | 45101
| |
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