Search results for the GEO ID: GSE12966 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM325132 | GPL1355 |
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Rat calvaria_1
|
Rat calvarial bone
|
RAT
Strain: CD
Gender: Male
Weight: 110
Tissue: Calvarial bone – attendant soft tissue removed
|
Samples underwent 1 round of amplification prior to labeling using the Affymetrix GeneChip® One-Cycle cDNA Synthesis Kit.
|
Sample_geo_accession | GSM325132
| Sample_status | Public on Nov 15 2008
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Nov 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Bone samples taken from different skeletal sites
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissue dissected and ground to a paste in liquid nitrogen in pestle and mortar. Immediate immersion/homogenization in QIAzol. Aqueous phase transferred to QIAgen RNeasy (Fibrous tissue) Mini column for RNA prep.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_hyb_protocol | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_scan_protocol | Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Scanner 3000 with Workstation.
| Sample_data_processing | MAS5 algorithm
| Sample_platform_id | GPL1355
| Sample_contact_name | Simon,Charles,Rawlinson
| Sample_contact_institute | Bart's and The London School of Medicine and Dentistry
| Sample_contact_address | 4 Newark Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | NW1 0TU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325132/suppl/GSM325132.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325132/suppl/GSM325132.CHP.gz
| Sample_series_id | GSE12966
| Sample_series_id | GSE13610
| Sample_data_row_count | 31099
| |
|
GSM325141 | GPL1355 |
|
Rat calvaria_2
|
Rat calvarial bone
|
RAT
Strain: CD
Gender: Male
Weight: 110
Tissue: Calvarial bone – attendant soft tissue removed
|
Samples underwent 1 round of amplification prior to labeling using the Affymetrix GeneChip® One-Cycle cDNA Synthesis Kit.
|
Sample_geo_accession | GSM325141
| Sample_status | Public on Nov 15 2008
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Nov 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Bone samples taken from different skeletal sites
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissue dissected and ground to a paste in liquid nitrogen in pestle and mortar. Immediate immersion/homogenization in QIAzol. Aqueous phase transferred to QIAgen RNeasy (Fibrous tissue) Mini column for RNA prep.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_hyb_protocol | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_scan_protocol | Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Scanner 3000 with Workstation.
| Sample_data_processing | MAS5 algorithm
| Sample_platform_id | GPL1355
| Sample_contact_name | Simon,Charles,Rawlinson
| Sample_contact_institute | Bart's and The London School of Medicine and Dentistry
| Sample_contact_address | 4 Newark Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | NW1 0TU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325141/suppl/GSM325141.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325141/suppl/GSM325141.CHP.gz
| Sample_series_id | GSE12966
| Sample_series_id | GSE13610
| Sample_data_row_count | 31099
| |
|
GSM325162 | GPL1355 |
|
Rat calvaria_3
|
Rat calvarial bone
|
RAT
Strain: CD
Gender: Male
Weight: 110
Tissue: Calvarial bone – attendant soft tissue removed
|
Samples underwent 1 round of amplification prior to labeling using the Affymetrix GeneChip® One-Cycle cDNA Synthesis Kit.
|
Sample_geo_accession | GSM325162
| Sample_status | Public on Nov 15 2008
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Nov 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Bone samples taken from different skeletal sites
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissue dissected and ground to a paste in liquid nitrogen in pestle and mortar. Immediate immersion/homogenization in QIAzol. Aqueous phase transferred to QIAgen RNeasy (Fibrous tissue) Mini column for RNA prep.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_hyb_protocol | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_scan_protocol | Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Scanner 3000 with Workstation.
| Sample_data_processing | MAS5 algorithm
| Sample_platform_id | GPL1355
| Sample_contact_name | Simon,Charles,Rawlinson
| Sample_contact_institute | Bart's and The London School of Medicine and Dentistry
| Sample_contact_address | 4 Newark Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | NW1 0TU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325162/suppl/GSM325162.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325162/suppl/GSM325162.CHP.gz
| Sample_series_id | GSE12966
| Sample_series_id | GSE13610
| Sample_data_row_count | 31099
| |
|
GSM325165 | GPL1355 |
|
Rat calvaria_4
|
Rat calvarial bone
|
RAT
Strain: CD
Gender: Male
Weight: 110
Tissue: Calvarial bone – attendant soft tissue removed
|
Samples underwent 1 round of amplification prior to labeling using the Affymetrix GeneChip® One-Cycle cDNA Synthesis Kit.
|
Sample_geo_accession | GSM325165
| Sample_status | Public on Nov 15 2008
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Nov 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Bone samples taken from different skeletal sites
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissue dissected and ground to a paste in liquid nitrogen in pestle and mortar. Immediate immersion/homogenization in QIAzol. Aqueous phase transferred to QIAgen RNeasy (Fibrous tissue) Mini column for RNA prep.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_hyb_protocol | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_scan_protocol | Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Scanner 3000 with Workstation.
| Sample_data_processing | MAS5 algorithm
| Sample_platform_id | GPL1355
| Sample_contact_name | Simon,Charles,Rawlinson
| Sample_contact_institute | Bart's and The London School of Medicine and Dentistry
| Sample_contact_address | 4 Newark Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | NW1 0TU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325165/suppl/GSM325165.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325165/suppl/GSM325165.CHP.gz
| Sample_series_id | GSE12966
| Sample_series_id | GSE13610
| Sample_data_row_count | 31099
| |
|
GSM325166 | GPL1355 |
|
Rat ulna_1
|
Rat ulnar bone
|
RAT
Strain: CD
Gender: Male
Weight: 110
Tissue: Calvarial bone – attendant soft tissue removed
|
Samples underwent 1 round of amplification prior to labeling using the Affymetrix GeneChip® One-Cycle cDNA Synthesis Kit.
|
Sample_geo_accession | GSM325166
| Sample_status | Public on Nov 15 2008
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Nov 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Bone samples taken from different skeletal sites
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissue dissected and ground to a paste in liquid nitrogen in pestle and mortar. Immediate immersion/homogenization in QIAzol. Aqueous phase transferred to QIAgen RNeasy (Fibrous tissue) Mini column for RNA prep.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_hyb_protocol | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_scan_protocol | Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Scanner 3000 with Workstation.
| Sample_data_processing | MAS5 algorithm
| Sample_platform_id | GPL1355
| Sample_contact_name | Simon,Charles,Rawlinson
| Sample_contact_institute | Bart's and The London School of Medicine and Dentistry
| Sample_contact_address | 4 Newark Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | NW1 0TU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325166/suppl/GSM325166.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325166/suppl/GSM325166.CHP.gz
| Sample_series_id | GSE12966
| Sample_series_id | GSE13610
| Sample_data_row_count | 31099
| |
|
GSM325167 | GPL1355 |
|
Rat ulna_2
|
Rat ulnar bone
|
RAT
Strain: CD
Gender: Male
Weight: 110
Tissue: Calvarial bone – attendant soft tissue removed
|
Samples underwent 1 round of amplification prior to labeling using the Affymetrix GeneChip® One-Cycle cDNA Synthesis Kit.
|
Sample_geo_accession | GSM325167
| Sample_status | Public on Nov 15 2008
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Nov 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Bone samples taken from different skeletal sites
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissue dissected and ground to a paste in liquid nitrogen in pestle and mortar. Immediate immersion/homogenization in QIAzol. Aqueous phase transferred to QIAgen RNeasy (Fibrous tissue) Mini column for RNA prep.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_hyb_protocol | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_scan_protocol | Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Scanner 3000 with Workstation.
| Sample_data_processing | MAS5 algorithm
| Sample_platform_id | GPL1355
| Sample_contact_name | Simon,Charles,Rawlinson
| Sample_contact_institute | Bart's and The London School of Medicine and Dentistry
| Sample_contact_address | 4 Newark Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | NW1 0TU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325167/suppl/GSM325167.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325167/suppl/GSM325167.CHP.gz
| Sample_series_id | GSE12966
| Sample_series_id | GSE13610
| Sample_data_row_count | 31099
| |
|
GSM325168 | GPL1355 |
|
Rat ulna_3
|
Rat ulnar bone
|
RAT
Strain: CD
Gender: Male
Weight: 110
Tissue: Calvarial bone – attendant soft tissue removed
|
Samples underwent 1 round of amplification prior to labeling using the Affymetrix GeneChip® One-Cycle cDNA Synthesis Kit.
|
Sample_geo_accession | GSM325168
| Sample_status | Public on Nov 15 2008
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Nov 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Bone samples taken from different skeletal sites
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissue dissected and ground to a paste in liquid nitrogen in pestle and mortar. Immediate immersion/homogenization in QIAzol. Aqueous phase transferred to QIAgen RNeasy (Fibrous tissue) Mini column for RNA prep.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_hyb_protocol | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_scan_protocol | Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Scanner 3000 with Workstation.
| Sample_data_processing | MAS5 algorithm
| Sample_platform_id | GPL1355
| Sample_contact_name | Simon,Charles,Rawlinson
| Sample_contact_institute | Bart's and The London School of Medicine and Dentistry
| Sample_contact_address | 4 Newark Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | NW1 0TU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325168/suppl/GSM325168.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325168/suppl/GSM325168.CHP.gz
| Sample_series_id | GSE12966
| Sample_series_id | GSE13610
| Sample_data_row_count | 31099
| |
|
GSM325169 | GPL1355 |
|
Rat ulna_4
|
Rat ulnar bone
|
RAT
Strain: CD
Gender: Male
Weight: 110
Tissue: Calvarial bone – attendant soft tissue removed
Treatment protocol: Bone samples taken from different skeletal sites
|
Samples underwent 1 round of amplification prior to labeling using the Affymetrix GeneChip® One-Cycle cDNA Synthesis Kit.
|
Sample_geo_accession | GSM325169
| Sample_status | Public on Nov 15 2008
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Nov 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Bone samples taken from different skeletal sites
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissue dissected and ground to a paste in liquid nitrogen in pestle and mortar. Immediate immersion/homogenization in QIAzol. Aqueous phase transferred to QIAgen RNeasy (Fibrous tissue) Mini column for RNA prep.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_hyb_protocol | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_scan_protocol | Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Scanner 3000 with Workstation.
| Sample_data_processing | MAS5 algorithm
| Sample_platform_id | GPL1355
| Sample_contact_name | Simon,Charles,Rawlinson
| Sample_contact_institute | Bart's and The London School of Medicine and Dentistry
| Sample_contact_address | 4 Newark Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | NW1 0TU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325169/suppl/GSM325169.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325169/suppl/GSM325169.CHP.gz
| Sample_series_id | GSE12966
| Sample_series_id | GSE13610
| Sample_data_row_count | 31099
| |
|
GSM325170 | GPL1355 |
|
Rat ulna_5
|
Rat ulnar bone
|
RAT
Strain: CD
Gender: Male
Weight: 110
Tissue: Limb bone – attendant soft tissue removed
|
Samples underwent 1 round of amplification prior to labeling using the Affymetrix GeneChip® One-Cycle cDNA Synthesis Kit.
|
Sample_geo_accession | GSM325170
| Sample_status | Public on Nov 15 2008
| Sample_submission_date | Sep 29 2008
| Sample_last_update_date | Nov 14 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_treatment_protocol_ch1 | Bone samples taken from different skeletal sites
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissue dissected and ground to a paste in liquid nitrogen in pestle and mortar. Immediate immersion/homogenization in QIAzol. Aqueous phase transferred to QIAgen RNeasy (Fibrous tissue) Mini column for RNA prep.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_hyb_protocol | See Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Fluidics Station 450.
| Sample_scan_protocol | Affymetrix GeneChip® Expression Analysis Technical Manual. Used the GeneChip® Scanner 3000 with Workstation.
| Sample_data_processing | MAS5 algorithm
| Sample_platform_id | GPL1355
| Sample_contact_name | Simon,Charles,Rawlinson
| Sample_contact_institute | Bart's and The London School of Medicine and Dentistry
| Sample_contact_address | 4 Newark Street
| Sample_contact_city | London
| Sample_contact_zip/postal_code | NW1 0TU
| Sample_contact_country | United Kingdom
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325170/suppl/GSM325170.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM325nnn/GSM325170/suppl/GSM325170.CHP.gz
| Sample_series_id | GSE12966
| Sample_series_id | GSE13610
| Sample_data_row_count | 31099
| |
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