Search results for the GEO ID: GSE13063 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM327154 | GPL1261 |
|
Fast Liver of WT mice_CT2
|
Fasted Liver of WT mice at circadian time 2
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT4. Tissue was collected approximately 24 hours later during the second day of constant darkness.
|
Sample_geo_accession | GSM327154
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 05 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327154/suppl/GSM327154.CEL.gz
| Sample_series_id | GSE13063
| Sample_series_id | GSE13093
| Sample_data_row_count | 45101
| |
|
GSM327155 | GPL1261 |
|
Fast Liver of WT mice_CT4
|
Fasted Liver of WT mice at circadian time 4
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT4. Tissue was collected approximately 24 hours later during the second day of constant darkness
|
Sample_geo_accession | GSM327155
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 05 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327155/suppl/GSM327155.CEL.gz
| Sample_series_id | GSE13063
| Sample_series_id | GSE13093
| Sample_data_row_count | 45101
| |
|
GSM327156 | GPL1261 |
|
Fast Liver of WT mice_CT6
|
Fasted Liver of WT mice at circadian time 6
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT4. Tissue was collected approximately 24 hours later during the second day of constant darkness.
|
Sample_geo_accession | GSM327156
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 05 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327156/suppl/GSM327156.CEL.gz
| Sample_series_id | GSE13063
| Sample_series_id | GSE13093
| Sample_data_row_count | 45101
| |
|
GSM327157 | GPL1261 |
|
Fast Liver of WT mice_CT8
|
Fasted Liver of WT mice at circadian time 8
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT4. Tissue was collected approximately 24 hours later during the second day of constant darkness
|
Sample_geo_accession | GSM327157
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 05 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327157/suppl/GSM327157.CEL.gz
| Sample_series_id | GSE13063
| Sample_series_id | GSE13093
| Sample_data_row_count | 45101
| |
|
GSM327158 | GPL1261 |
|
Fast Liver of WT mice_CT10
|
Fasted Liver of WT mice at circadian time 10
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT4. Tissue was collected approximately 24 hours later during the second day of constant darkness.
|
Sample_geo_accession | GSM327158
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 05 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327158/suppl/GSM327158.CEL.gz
| Sample_series_id | GSE13063
| Sample_series_id | GSE13093
| Sample_data_row_count | 45101
| |
|
GSM327159 | GPL1261 |
|
Refed Liver of WT mice_CT6
|
Refed Liver of WT mice at circadian time 6
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition:: Fed
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT4 and. 24 hours later mice were fed again at CT4 on the second day. Tissue was collected at the indicated timepoint after feeding.
|
Sample_geo_accession | GSM327159
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 05 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327159/suppl/GSM327159.CEL.gz
| Sample_series_id | GSE13063
| Sample_series_id | GSE13093
| Sample_data_row_count | 45101
| |
|
GSM327160 | GPL1261 |
|
Refed Liver of WT mice_CT8
|
Refed Liver of WT mice at circadian time 8
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition:: Fed
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT4 and. 24 hours later mice were fed again at CT4 on the second day. Tissue was collected at the indicated timepoint after feeding.
|
Sample_geo_accession | GSM327160
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 06 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327160/suppl/GSM327160.CEL.gz
| Sample_series_id | GSE13063
| Sample_series_id | GSE13093
| Sample_data_row_count | 45101
| |
|
GSM327161 | GPL1261 |
|
Refed Liver of WT mice_CT10
|
Refed Liver of WT mice at circadian time 10
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition:: Fed
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT4 and. 24 hours later mice were fed again at CT4 on the second day. Tissue was collected at the indicated timepoint after feeding.
|
Sample_geo_accession | GSM327161
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 06 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327161/suppl/GSM327161.CEL.gz
| Sample_series_id | GSE13063
| Sample_series_id | GSE13093
| Sample_data_row_count | 45101
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|