Search results for the GEO ID: GSE13064 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM327162 | GPL1261 |
|
Fasted Liver of WT mice_CT36
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Fasted Liver of WT mice at circadian time 36
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Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT12 and. 24 hours later tissue was collected at the indicated timepoint on the second day of constant darkness
|
Sample_geo_accession | GSM327162
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 06 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327162/suppl/GSM327162.CEL.gz
| Sample_series_id | GSE13064
| Sample_series_id | GSE13093
| Sample_data_row_count | 45100
| |
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GSM327163 | GPL1261 |
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Fasted Liver of WT mice_CT38
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Fasted Liver of WT mice at circadian time 38
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT12 and. 24 hours later tissue was collected at the indicated timepoint on the second day of constant darkness
|
Sample_geo_accession | GSM327163
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 06 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327163/suppl/GSM327163.CEL.gz
| Sample_series_id | GSE13064
| Sample_series_id | GSE13093
| Sample_data_row_count | 45100
| |
|
GSM327164 | GPL1261 |
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Fasted Liver of WT mice_CT40
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Fasted Liver of WT mice at circadian time 40
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT12 and. 24 hours later tissue was collected at the indicated timepoint on the second day of constant darkness
|
Sample_geo_accession | GSM327164
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 06 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327164/suppl/GSM327164.CEL.gz
| Sample_series_id | GSE13064
| Sample_series_id | GSE13093
| Sample_data_row_count | 45100
| |
|
GSM327165 | GPL1261 |
|
Fasted Liver of WT mice_CT42
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Fasted Liver of WT mice at circadian time 42
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT12 and. 24 hours later tissue was collected at the indicated timepoint on the second day of constant darkness
|
Sample_geo_accession | GSM327165
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 06 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327165/suppl/GSM327165.CEL.gz
| Sample_series_id | GSE13064
| Sample_series_id | GSE13093
| Sample_data_row_count | 45100
| |
|
GSM327166 | GPL1261 |
|
Fasted Liver of WT mice_CT43
|
Fasted Liver of WT mice at circadian time 43
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT12 and. 24 hours later tissue was collected at the indicated timepoint on the second day of constant darkness
|
Sample_geo_accession | GSM327166
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 06 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327166/suppl/GSM327166.CEL.gz
| Sample_series_id | GSE13064
| Sample_series_id | GSE13093
| Sample_data_row_count | 45100
| |
|
GSM327167 | GPL1261 |
|
Fasted Liver of WT mice_CT44
|
Fasted Liver of WT mice at circadian time 44
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT12 and. 24 hours later tissue was collected at the indicated timepoint on the second day of constant darkness
|
Sample_geo_accession | GSM327167
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 06 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327167/suppl/GSM327167.CEL.gz
| Sample_series_id | GSE13064
| Sample_series_id | GSE13093
| Sample_data_row_count | 45100
| |
|
GSM327168 | GPL1261 |
|
Fasted Liver of WT mice_CT45
|
Fasted Liver of WT mice at circadian time 45
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT12 and. 24 hours later tissue was collected at the indicated timepoint on the second day of constant darkness
|
Sample_geo_accession | GSM327168
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 06 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327168/suppl/GSM327168.CEL.gz
| Sample_series_id | GSE13064
| Sample_series_id | GSE13093
| Sample_data_row_count | 45100
| |
|
GSM327169 | GPL1261 |
|
Fasted Liver of WT mice_CT46
|
Fasted Liver of WT mice at circadian time 46
|
Strain: C57/B6, Gender: male, Age: 8-12 weeks, Condition: Fasted
|
Food was made available ad libitum for two weeks. Mice were then released into constant darkness and food was withdrawn on the first day in constant darkness at CT12 and. 24 hours later tissue was collected at the indicated timepoint on the second day of constant darkness
|
Sample_geo_accession | GSM327169
| Sample_status | Public on Nov 12 2009
| Sample_submission_date | Oct 06 2008
| Sample_last_update_date | Nov 12 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction followed by Qiagen RNeasy columns
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Standard Affymetrix protocol
| Sample_hyb_protocol | Standard Affymetrix protocol
| Sample_scan_protocol | Standard Affymetrix scan protocol
| Sample_data_processing | Data from CEL files were normalized in R using the 'affy' package and the gcRMA algorithm. Log transformation of values was reversed and all values of a series of arrays were median normalized to 100
| Sample_platform_id | GPL1261
| Sample_contact_name | Christopher,,Vollmers
| Sample_contact_email | vollmers@salk.edu
| Sample_contact_laboratory | Panda Lab (RBIO-P)
| Sample_contact_department | Regulatory Biology Laboratory
| Sample_contact_institute | The Salk Institute for Biological Studies
| Sample_contact_address | 10010 North Torrey Pines Road
| Sample_contact_city | La Jolla
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92037
| Sample_contact_country | USA
| Sample_contact_web_link | http://www.salk.edu/faculty/faculty_details.php?id=65
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327169/suppl/GSM327169.CEL.gz
| Sample_series_id | GSE13064
| Sample_series_id | GSE13093
| Sample_data_row_count | 45100
| |
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