Search results for the GEO ID: GSE13065  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM327247 | GPL341 |
|
wild type male, biological rep1
|
wild type male PKD/Mhm rats
|
Genotype: wild type
gender: male
|
Gene expression data from kidney of 36d old wild type male PKD/Mhm rats
|
| Sample_geo_accession | GSM327247
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327247/suppl/GSM327247.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327248 | GPL341 |
|
wild type male, biological rep2
|
wild type male PKD/Mhm rats
|
Genotype: wild type
gender: male
|
Gene expression data from kidney of 36d old wild type male PKD/Mhm rats
|
| Sample_geo_accession | GSM327248
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327248/suppl/GSM327248.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327249 | GPL341 |
|
wild type male, biological rep3
|
wild type male PKD/Mhm rats
|
Genotype: wild type
gender: male
|
Gene expression data from kidney of 36d old wild type male PKD/Mhm rats
|
| Sample_geo_accession | GSM327249
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327249/suppl/GSM327249.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327250 | GPL341 |
|
wild type female, biological rep1
|
wild type female PKD/Mhm rats
|
Genotype: wild type
gender: female
|
Gene expression data from kidney of 36d old wild type female PKD/Mhm rats
|
| Sample_geo_accession | GSM327250
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327250/suppl/GSM327250.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327251 | GPL341 |
|
wild type female, biological rep2
|
wild type female PKD/Mhm rats
|
Genotype: wild type
gender: female
|
Gene expression data from kidney of 36d old wild type female PKD/Mhm rats
|
| Sample_geo_accession | GSM327251
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327251/suppl/GSM327251.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327252 | GPL341 |
|
wild type female, biological rep3
|
wild type female PKD/Mhm rats
|
Genotype: wild type
gender: female
|
Gene expression data from kidney of 36d old wild type female PKD/Mhm rats
|
| Sample_geo_accession | GSM327252
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327252/suppl/GSM327252.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327253 | GPL341 |
|
heterozygous affected male, biological rep1
|
heterozygous affected male PKD/Mhm rats
|
Genotype: heterozygous affected
gender: male
|
Gene expression data from kidney of 36d old heterozygous affected male PKD/Mhm rats
|
| Sample_geo_accession | GSM327253
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327253/suppl/GSM327253.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327254 | GPL341 |
|
heterozygous affected male, biological rep2
|
heterozygous affected male PKD/Mhm rats
|
Genotype: heterozygous affected
gender: male
|
Gene expression data from kidney of 36d old heterozygous affected male PKD/Mhm rats
|
| Sample_geo_accession | GSM327254
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327254/suppl/GSM327254.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327255 | GPL341 |
|
heterozygous affected male, biological rep3
|
heterozygous affected male PKD/Mhm rats
|
Genotype: heterozygous affected
gender: male
|
Gene expression data from kidney of 36d old heterozygous affected male PKD/Mhm rats
|
| Sample_geo_accession | GSM327255
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327255/suppl/GSM327255.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327256 | GPL341 |
|
heterozygous affected female, biological rep1
|
heterozygous affected female PKD/Mhm rats
|
Genotype: heterozygous affected
gender: female
|
Gene expression data from kidney of 36d old heterozygous affected female PKD/Mhm rats
|
| Sample_geo_accession | GSM327256
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327256/suppl/GSM327256.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327257 | GPL341 |
|
heterozygous affected female, biological rep2
|
heterozygous affected female PKD/Mhm rats
|
Genotype: heterozygous affected
gender: female
|
Gene expression data from kidney of 36d old heterozygous affected female PKD/Mhm rats
|
| Sample_geo_accession | GSM327257
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327257/suppl/GSM327257.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
| | |
|
GSM327258 | GPL341 |
|
heterozygous affected female, biological rep3
|
heterozygous affected female PKD/Mhm rats
|
Genotype: heterozygous affected
gender: female
|
Gene expression data from kidney of 36d old heterozygous affected female PKD/Mhm rats
|
| Sample_geo_accession | GSM327258
| | Sample_status | Public on Sep 30 2009
| | Sample_submission_date | Oct 06 2008
| | Sample_last_update_date | Oct 06 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | Animals under anesthesia with isofluran inhalation were killed by cervical translocation. The left kidneys were snap frozen in liquid nitrogen for microarray analysis.
| | Sample_growth_protocol_ch1 | Rats were kept under standard laboratory conditions (12 h light cycle, 55% humidity, 20 ± 2ºC) in an animal care facility in Mannheim, Germany. They had free access to tap water and to standard 19% protein rat pellet feed (ssniff R/M-H, Soest, Lage, Germany).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Processed according to the standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner3000.
| | Sample_data_processing | The data were analyzed with JMP Genomics, version 3.1 (Santa Clara, CA, USA). The data have been log2 transformed and quantile normalized for each microarray.
| | Sample_platform_id | GPL341
| | Sample_contact_name | Li,,Li
| | Sample_contact_email | li.li@gmx.de
| | Sample_contact_institute | University Heidelberg
| | Sample_contact_address | Theodor-Kutzer-Ufer
| | Sample_contact_city | Mannheim
| | Sample_contact_zip/postal_code | 68167
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327258/suppl/GSM327258.CEL.gz
| | Sample_series_id | GSE13065
| | Sample_data_row_count | 15923
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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