Search results for the GEO ID: GSE13083 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM327637 | GPL96 |
|
Rustgi PO1 SI1
|
biopsy of normal small intestine
|
N/A
|
N/A
|
Sample_geo_accession | GSM327637
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327637/suppl/GSM327637.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327638 | GPL96 |
|
Rustgi PO1 SI2
|
biopsy of normal small intestine
|
N/A
|
N/A
|
Sample_geo_accession | GSM327638
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327638/suppl/GSM327638.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327639 | GPL96 |
|
Rustgi PO1 SI3
|
biopsy of normal small intestine
|
N/A
|
N/A
|
Sample_geo_accession | GSM327639
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327639/suppl/GSM327639.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327640 | GPL96 |
|
Rustgi PO1 SI4
|
biopsy of normal small intestine
|
N/A
|
N/A
|
Sample_geo_accession | GSM327640
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327640/suppl/GSM327640.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327641 | GPL96 |
|
Rustgi PO1 SI6
|
biopsy of normal small intestine
|
N/A
|
N/A
|
Sample_geo_accession | GSM327641
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327641/suppl/GSM327641.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327642 | GPL96 |
|
Silberg2 (S2) 021101NE
|
biopsy of normal esophagus from the same patient as a matched Barrett's esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327642
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327642/suppl/GSM327642.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327643 | GPL96 |
|
Silberg2 (9) 021301NE
|
biopsy of normal esophagus from the same patient as a matched Barrett's esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327643
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327643/suppl/GSM327643.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327644 | GPL96 |
|
Silberg3 ( S1) 120902NE
|
biopsy of normal esophagus from the same patient as a matched Barrett's esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327644
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327644/suppl/GSM327644.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327645 | GPL96 |
|
Silberg2 (11) 130701NE
|
biopsy of normal esophagus from the same patient as a matched Barrett's esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327645
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327645/suppl/GSM327645.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327646 | GPL96 |
|
Silberg3 ( S4) 191102-1NE
|
biopsy of normal esophagus from the same patient as a matched Barrett's esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327646
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327646/suppl/GSM327646.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327647 | GPL96 |
|
Silberg2 (S4) 23100NE
|
biopsy of normal esophagus from the same patient as a matched Barrett's esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327647
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327647/suppl/GSM327647.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327648 | GPL96 |
|
Silberg2 (S10) 25091NE
|
biopsy of normal esophagus from the same patient as a matched Barrett's esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327648
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327648/suppl/GSM327648.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327649 | GPL96 |
|
Silberg2 (S1) 021101BE
|
biopsy of Barrett's esophagus from the same patient as a matched normal esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327649
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327649/suppl/GSM327649.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327650 | GPL96 |
|
Silberg2 (8) 021301BE
|
biopsy of Barrett's esophagus from the same patient as a matched normal esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327650
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327650/suppl/GSM327650.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327651 | GPL96 |
|
Silberg3 ( S2) 120902BE
|
biopsy of Barrett's esophagus from the same patient as a matched normal esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327651
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327651/suppl/GSM327651.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327652 | GPL96 |
|
Silberg2 (10) 130701BE
|
biopsy of Barrett's esophagus from the same patient as a matched normal esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327652
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327652/suppl/GSM327652.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327653 | GPL96 |
|
Silberg3 ( S5) 191102-1BE
|
biopsy of Barrett's esophagus from the same patient as a matched normal esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327653
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327653/suppl/GSM327653.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327654 | GPL96 |
|
Silberg2 (S3) 23100BE
|
biopsy of Barrett's esophagus from the same patient as a matched normal esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327654
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327654/suppl/GSM327654.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
GSM327655 | GPL96 |
|
Silberg2 (S11) 25091BE
|
biopsy of Barrett's esophagus from the same patient as a matched normal esophagus biposy
|
N/A
|
N/A
|
Sample_geo_accession | GSM327655
| Sample_status | Public on Oct 08 2008
| Sample_submission_date | Oct 07 2008
| Sample_last_update_date | Oct 08 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was isolated by first homogenizing the tissue with a Brinkmann homogenizer, passing it through a QIAshredder (Qiagen,) column and isolating the RNA by RNeasy miniprep kit (Qiagen).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | cRNA with biotin labeling was performed according to Affymetrix protocols
| Sample_hyb_protocol | hybridization of cRNAs to Affymetrix chips were performed according manufacturer's instructions
| Sample_scan_protocol | scanning of Affymetrix chips were performed according manufacturer's instructions
| Sample_data_processing | The 19 CEL files were processed using Stratagene’s Array Lite 3.4 software using GC-RMA algorithm to calculate probeset intensity values and to calculate Absent/Present/Marginal flags. These intensity values were log2 transformed.
| Sample_platform_id | GPL96
| Sample_contact_name | Anil,K,Rustgi
| Sample_contact_email | anil2@mail.med.upenn.edu
| Sample_contact_phone | 215-898-0161
| Sample_contact_fax | 215-573-2024
| Sample_contact_department | Medicine-Gastroenterology
| Sample_contact_institute | University of Pennsylvania
| Sample_contact_address | 415 Curie Blvd, 600 CRB
| Sample_contact_city | Philadelphia
| Sample_contact_state | PA
| Sample_contact_zip/postal_code | 19104
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM327nnn/GSM327655/suppl/GSM327655.CEL.gz
| Sample_series_id | GSE13083
| Sample_data_row_count | 22283
| |
|
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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