Search results for the GEO ID: GSE13129  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM328545 | GPL1261 |
|
control transfected B16-F10 cells (rep 1)
|
B16-F10 mouse melanoma cells, control tranfsection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328545
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with empty pMES vector
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocl.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328545/suppl/GSM328545.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328545/suppl/GSM328545.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328545/suppl/GSM328545.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
|
GSM328546 | GPL1261 |
|
control transfected B16-F10 cells (rep 2)
|
B16-F10 mouse melanoma cells, control tranfsection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328546
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with empty pMES vector
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocl.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328546/suppl/GSM328546.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328546/suppl/GSM328546.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328546/suppl/GSM328546.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
|
GSM328547 | GPL1261 |
|
control transfected B16-F10 cells (rep 3)
|
B16-F10 mouse melanoma cells, control tranfsection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328547
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with empty pMES vector
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocl.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328547/suppl/GSM328547.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328547/suppl/GSM328547.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328547/suppl/GSM328547.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
|
GSM328548 | GPL1261 |
|
control transfected B16-F10 cells (rep 4)
|
B16-F10 mouse melanoma cells, control tranfsection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328548
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with empty pMES vector
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocl.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328548/suppl/GSM328548.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328548/suppl/GSM328548.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328548/suppl/GSM328548.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
|
GSM328549 | GPL1261 |
|
FoxD3-transfected B16-F10 cells (rep 1)
|
B16-F10 mouse melanoma cells, FoxD3-pMES transfection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328549
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with FoxD3-pMES vector (expresses chicken FoxD3 and EGFP under control the chick beta-actin promoter)
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328549/suppl/GSM328549.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328549/suppl/GSM328549.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328549/suppl/GSM328549.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
|
GSM328550 | GPL1261 |
|
FoxD3-transfected B16-F10 cells (rep 2)
|
B16-F10 mouse melanoma cells, FoxD3-pMES transfection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328550
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with FoxD3-pMES vector (expresses chicken FoxD3 and EGFP under control the chick beta-actin promoter)
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328550/suppl/GSM328550.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328550/suppl/GSM328550.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328550/suppl/GSM328550.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
|
GSM328551 | GPL1261 |
|
FoxD3-transfected B16-F10 cells (rep 3)
|
B16-F10 mouse melanoma cells, FoxD3-pMES transfection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328551
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with FoxD3-pMES vector (expresses chicken FoxD3 and EGFP under control the chick beta-actin promoter)
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328551/suppl/GSM328551.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328551/suppl/GSM328551.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328551/suppl/GSM328551.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
|
GSM328552 | GPL1261 |
|
FoxD3-transfected B16-F10 cells (rep 4)
|
B16-F10 mouse melanoma cells, FoxD3-pMES transfection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328552
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with FoxD3-pMES vector (expresses chicken FoxD3 and EGFP under control the chick beta-actin promoter)
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328552/suppl/GSM328552.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328552/suppl/GSM328552.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328552/suppl/GSM328552.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
|
GSM328553 | GPL1261 |
|
FoxD3-VP16-transfected B16-F10 cells (rep 1)
|
B16-F10 mouse melanoma cells, FoxD3-VP16-pMES transfection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328553
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with FoxD3-VP16-pMES vector (expresses chicken FoxD3-VP16 and EGFP under control the chick beta-actin promoter. FoxD3-VP16 has the C-terminal repression domain replaced by the VP16 transactivation domain)
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328553/suppl/GSM328553.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328553/suppl/GSM328553.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328553/suppl/GSM328553.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
|
GSM328554 | GPL1261 |
|
FoxD3-VP16-transfected B16-F10 cells (rep 2)
|
B16-F10 mouse melanoma cells, FoxD3-VP16-pMES transfection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328554
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with FoxD3-VP16-pMES vector (expresses chicken FoxD3-VP16 and EGFP under control the chick beta-actin promoter. FoxD3-VP16 has the C-terminal repression domain replaced by the VP16 transactivation domain)
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328554/suppl/GSM328554.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328554/suppl/GSM328554.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328554/suppl/GSM328554.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
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GSM328555 | GPL1261 |
|
FoxD3-VP16-transfected B16-F10 cells (rep 4)
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B16-F10 mouse melanoma cells, FoxD3-VP16-pMES transfection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328555
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with FoxD3-VP16-pMES vector (expresses chicken FoxD3-VP16 and EGFP under control the chick beta-actin promoter. FoxD3-VP16 has the C-terminal repression domain replaced by the VP16 transactivation domain)
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328555/suppl/GSM328555.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328555/suppl/GSM328555.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328555/suppl/GSM328555.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
|
GSM328556 | GPL1261 |
|
FoxD3-VP16-transfected B16-F10 cells (rep 3)
|
B16-F10 mouse melanoma cells, FoxD3-VP16-pMES transfection
|
B16-F10 mouse melanoma cells
ATCC: CRL-6475
|
Analyzed in dChip
|
| Sample_geo_accession | GSM328556
| | Sample_status | Public on Oct 15 2008
| | Sample_submission_date | Oct 07 2008
| | Sample_last_update_date | Oct 14 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | transfected with FoxD3-VP16-pMES vector (expresses chicken FoxD3-VP16 and EGFP under control the chick beta-actin promoter. FoxD3-VP16 has the C-terminal repression domain replaced by the VP16 transactivation domain)
| | Sample_growth_protocol_ch1 | grown in DMEM with 10% Hyclone Bovine Growth Serum supplemented with pen/strep
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | 24 hours after transfection, cells were sorted and EGFP-postive cells were collected by FACS. RNA was isolated using Trizol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the TargetAmp™ 1-Round Biotin-aRNA Amplification kit from Epicentre Biotechnologies according to the manufacturer's protocol. The resulting amino-allyl aRNA was biotinylated using Biotin-X-X-NHS, also from Epicentre, according to the manufacturer's protocol.
| | Sample_hyb_protocol | Hybridization was done by the microarray core facility at UC Davis, using the standard Affymetrix protocol on a Fluidics Station 450.
| | Sample_scan_protocol | Scanned on a 3000 GeneChip Scanner according to the instructions provided by Affymetrix
| | Sample_data_processing | MAS5 algorithm
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aaron,,Thomas
| | Sample_contact_email | ajthomas@ucdavis.edu
| | Sample_contact_laboratory | Erickson
| | Sample_contact_department | MCB
| | Sample_contact_institute | University of California, Davis
| | Sample_contact_address | One Shields Ave.
| | Sample_contact_city | Davis
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 95616
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328556/suppl/GSM328556.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328556/suppl/GSM328556.CHP.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328556/suppl/GSM328556.dcp.gz
| | Sample_series_id | GSE13129
| | Sample_data_row_count | 45101
| | |
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