Search results for the GEO ID: GSE13130 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM328764 | GPL339 |
|
LC from biological replicate AhR ko_1
|
purified Langerhans cells from ear epidermis, isolated after 16 hours of ex vivo cultivation
|
strain C67BL/6 AhR -/- exon2 deleted, 6-8 week old female mice
|
For cell culturing of epidermal cells, an additional digestion with DNAse I (15 min, 130 U/ml) was included. The resulting single cell suspension was cultured in complete medium for 16 hours at a density of 1.5x106 cells/ml in 6-well plates. For sorting, epidermal cells were centrifuged on dense BSA or OptiPrep® (Sigma). The low-density fraction contained 20-35 % LC, which were enriched by FACS sorting of vital MHC-II+ cells using a FACSCalibur (Becton Dickinson, Heidelberg, Germany) to a purity >95 %. Sort purity was verified by re-analysis of samples.
|
Sample_geo_accession | GSM328764
| Sample_status | Public on Sep 22 2009
| Sample_submission_date | Oct 08 2008
| Sample_last_update_date | Sep 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | no treatment of mice
| Sample_growth_protocol_ch1 | epidermal sheets, cultivated for 16 hours, then isolation of LC by BSA gradient and FACS sorting
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Trizol™ (Invitrogen) according to the manufacturers’ instructions. For microarray analysis mRNA was amplified prior to chip-hybridization using the MessageAmp™ Kit of Ambion (Woodward St. Austin, USA)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated (Enzo Bio Array™HighYield™ RNA transcript labeling kit (Affymetrix, High Wycombe, UK))
| Sample_hyb_protocol | standard Affymetrix protocol
| Sample_scan_protocol | standard Affymetrix protocol
| Sample_data_processing | The resulting cel files were analyzed with the bioconductor affy package using the RMA (robust microarray analysis) algorithm.
| Sample_platform_id | GPL339
| Sample_contact_name | Charlotte,,Esser
| Sample_contact_email | chesser@uni-duesseldorf.de
| Sample_contact_department | Molecular Immunology
| Sample_contact_institute | IUF
| Sample_contact_address | Auf´m Hennekamp 50
| Sample_contact_city | Dusseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328764/suppl/GSM328764.CEL.gz
| Sample_series_id | GSE13130
| Sample_data_row_count | 22690
| |
|
GSM328765 | GPL339 |
|
LC from biological replicate AhR ko_2
|
purified Langerhans cells from ear epidermis, isolated after 16 hours of ex vivo cultivation
|
strain C67BL/6 AhR -/- exon2 deleted, 6-8 week old female mice
|
For cell culturing of epidermal cells, an additional digestion with DNAse I (15 min, 130 U/ml) was included. The resulting single cell suspension was cultured in complete medium for 16 hours at a density of 1.5x106 cells/ml in 6-well plates. For sorting, epidermal cells were centrifuged on dense BSA or OptiPrep® (Sigma). The low-density fraction contained 20-35 % LC, which were enriched by FACS sorting of vital MHC-II+ cells using a FACSCalibur (Becton Dickinson, Heidelberg, Germany) to a purity >95 %. Sort purity was verified by re-analysis of samples.
|
Sample_geo_accession | GSM328765
| Sample_status | Public on Sep 22 2009
| Sample_submission_date | Oct 08 2008
| Sample_last_update_date | Sep 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | no treatment of mice
| Sample_growth_protocol_ch1 | epidermal sheets, cultivated for 16 hours, then isolation of LC by BSA gradient and FACS sorting
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Trizol™ (Invitrogen) according to the manufacturers’ instructions. For microarray analysis mRNA was amplified prior to chip-hybridization using the MessageAmp™ Kit of Ambion (Woodward St. Austin, USA)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated (Enzo Bio Array™HighYield™ RNA transcript labeling kit (Affymetrix, High Wycombe, UK))
| Sample_hyb_protocol | standard Affymetrix protocol
| Sample_scan_protocol | standard Affymetrix protocol
| Sample_data_processing | The resulting cel files were analyzed with the bioconductor affy package using the RMA (robust microarray analysis) algorithm.
| Sample_platform_id | GPL339
| Sample_contact_name | Charlotte,,Esser
| Sample_contact_email | chesser@uni-duesseldorf.de
| Sample_contact_department | Molecular Immunology
| Sample_contact_institute | IUF
| Sample_contact_address | Auf´m Hennekamp 50
| Sample_contact_city | Dusseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328765/suppl/GSM328765.CEL.gz
| Sample_series_id | GSE13130
| Sample_data_row_count | 22690
| |
|
GSM328766 | GPL339 |
|
LC from biological replicate C57BL/6_1
|
purified Langerhans cells from ear epidermis, isolated after 16 hours of ex vivo cultivation
|
C57BL/6 mice, 6-8 week old female mice
|
For cell culturing of epidermal cells, an additional digestion with DNAse I (15 min, 130 U/ml) was included. The resulting single cell suspension was cultured in complete medium for 16 hours at a density of 1.5x106 cells/ml in 6-well plates. For sorting, epidermal cells were centrifuged on dense BSA or OptiPrep® (Sigma). The low-density fraction contained 20-35 % LC, which were enriched by FACS sorting of vital MHC-II+ cells using a FACSCalibur (Becton Dickinson, Heidelberg, Germany) to a purity >95 %. Sort purity was verified by re-analysis of samples.
|
Sample_geo_accession | GSM328766
| Sample_status | Public on Sep 22 2009
| Sample_submission_date | Oct 08 2008
| Sample_last_update_date | Sep 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | no treatment of mice
| Sample_growth_protocol_ch1 | epidermal sheets, cultivated for 16 hours, then isolation of LC by BSA gradient and FACS sorting
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Trizol™ (Invitrogen) according to the manufacturers’ instructions. For microarray analysis mRNA was amplified prior to chip-hybridization using the MessageAmp™ Kit of Ambion (Woodward St. Austin, USA)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated (Enzo Bio Array™HighYield™ RNA transcript labeling kit (Affymetrix, High Wycombe, UK))
| Sample_hyb_protocol | standard Affymetrix protocol
| Sample_scan_protocol | standard Affymetrix protocol
| Sample_data_processing | The resulting cel files were analyzed with the bioconductor affy package using the RMA (robust microarray analysis) algorithm.
| Sample_platform_id | GPL339
| Sample_contact_name | Charlotte,,Esser
| Sample_contact_email | chesser@uni-duesseldorf.de
| Sample_contact_department | Molecular Immunology
| Sample_contact_institute | IUF
| Sample_contact_address | Auf´m Hennekamp 50
| Sample_contact_city | Dusseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328766/suppl/GSM328766.CEL.gz
| Sample_series_id | GSE13130
| Sample_data_row_count | 22690
| |
|
GSM328767 | GPL339 |
|
LC from biological replicate C57BL/6_2
|
purified Langerhans cells from ear epidermis, isolated after 16 hours of ex vivo cultivation
|
C57BL/6 mice, 6-8 week old female mice
|
For cell culturing of epidermal cells, an additional digestion with DNAse I (15 min, 130 U/ml) was included. The resulting single cell suspension was cultured in complete medium for 16 hours at a density of 1.5x106 cells/ml in 6-well plates. For sorting, epidermal cells were centrifuged on dense BSA or OptiPrep® (Sigma). The low-density fraction contained 20-35 % LC, which were enriched by FACS sorting of vital MHC-II+ cells using a FACSCalibur (Becton Dickinson, Heidelberg, Germany) to a purity >95 %. Sort purity was verified by re-analysis of samples.
|
Sample_geo_accession | GSM328767
| Sample_status | Public on Sep 22 2009
| Sample_submission_date | Oct 08 2008
| Sample_last_update_date | Sep 22 2009
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | no treatment of mice
| Sample_growth_protocol_ch1 | epidermal sheets, cultivated for 16 hours, then isolation of LC by BSA gradient and FACS sorting
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Trizol™ (Invitrogen) according to the manufacturers’ instructions. For microarray analysis mRNA was amplified prior to chip-hybridization using the MessageAmp™ Kit of Ambion (Woodward St. Austin, USA)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | RNA was biotinylated (Enzo Bio Array™HighYield™ RNA transcript labeling kit (Affymetrix, High Wycombe, UK))
| Sample_hyb_protocol | standard Affymetrix protocol
| Sample_scan_protocol | standard Affymetrix protocol
| Sample_data_processing | The resulting cel files were analyzed with the bioconductor affy package using the RMA (robust microarray analysis) algorithm.
| Sample_platform_id | GPL339
| Sample_contact_name | Charlotte,,Esser
| Sample_contact_email | chesser@uni-duesseldorf.de
| Sample_contact_department | Molecular Immunology
| Sample_contact_institute | IUF
| Sample_contact_address | Auf´m Hennekamp 50
| Sample_contact_city | Dusseldorf
| Sample_contact_zip/postal_code | 40225
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM328nnn/GSM328767/suppl/GSM328767.CEL.gz
| Sample_series_id | GSE13130
| Sample_data_row_count | 22690
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|