Search results for the GEO ID: GSE13143  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM329196 | GPL1261 |
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Wild-type 3T3-MEFs, technical replicate 1
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3T3-MEFs
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wild-type 3T3-MEFs
undifferentiated cells
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Gene expression data from wild-type 3T3-MEFs
Undifferentiated 3T3-MEFs were harvested upon reaching confluency.
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| Sample_geo_accession | GSM329196
| | Sample_status | Public on Jan 07 2009
| | Sample_submission_date | Oct 09 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized with MG430 2.0 arrays, washed and processed in accordance with standard Affymetrix protocols.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ruth,T,Yu
| | Sample_contact_laboratory | Ronald Evans
| | Sample_contact_department | Gene Expression Lab
| | Sample_contact_institute | Salk Institute
| | Sample_contact_address | 10010 N Torrey Pines Rd
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM329nnn/GSM329196/suppl/GSM329196.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM329nnn/GSM329196/suppl/GSM329196.CHP.gz
| | Sample_series_id | GSE13143
| | Sample_data_row_count | 45101
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GSM329197 | GPL1261 |
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Wild-type 3T3-MEFs, technical replicate 2
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3T3-MEFs
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wild-type 3T3-MEFs
undifferentiated cells
|
Gene expression data from wild-type 3T3-MEFs
Undifferentiated 3T3-MEFs were harvested upon reaching confluency.
|
| Sample_geo_accession | GSM329197
| | Sample_status | Public on Jan 07 2009
| | Sample_submission_date | Oct 09 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized with MG430 2.0 arrays, washed and processed in accordance with standard Affymetrix protocols.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ruth,T,Yu
| | Sample_contact_laboratory | Ronald Evans
| | Sample_contact_department | Gene Expression Lab
| | Sample_contact_institute | Salk Institute
| | Sample_contact_address | 10010 N Torrey Pines Rd
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM329nnn/GSM329197/suppl/GSM329197.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM329nnn/GSM329197/suppl/GSM329197.CHP.gz
| | Sample_series_id | GSE13143
| | Sample_data_row_count | 45101
| | |
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GSM329198 | GPL1261 |
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SMRTmRID 3T3-MEFs, technical replicate 1
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3T3-MEFs
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SMRTmRID 3T3-MEFs
undifferentiated cells
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Gene expression data from SMRTmRID 3T3-MEFs
Undifferentiated 3T3-MEFs were harvested upon reaching confluency.
|
| Sample_geo_accession | GSM329198
| | Sample_status | Public on Jan 07 2009
| | Sample_submission_date | Oct 09 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized with MG430 2.0 arrays, washed and processed in accordance with standard Affymetrix protocols.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ruth,T,Yu
| | Sample_contact_laboratory | Ronald Evans
| | Sample_contact_department | Gene Expression Lab
| | Sample_contact_institute | Salk Institute
| | Sample_contact_address | 10010 N Torrey Pines Rd
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM329nnn/GSM329198/suppl/GSM329198.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM329nnn/GSM329198/suppl/GSM329198.CHP.gz
| | Sample_series_id | GSE13143
| | Sample_data_row_count | 45101
| | |
|
GSM329199 | GPL1261 |
|
SMRTmRID 3T3-MEFs, technical replicate 2
|
3T3-MEFs
|
SMRTmRID 3T3-MEFs
undifferentiated cells
|
Gene expression data from SMRTmRID 3T3-MEFs
Undifferentiated 3T3-MEFs were harvested upon reaching confluency.
|
| Sample_geo_accession | GSM329199
| | Sample_status | Public on Jan 07 2009
| | Sample_submission_date | Oct 09 2008
| | Sample_last_update_date | Jan 07 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized with MG430 2.0 arrays, washed and processed in accordance with standard Affymetrix protocols.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Ruth,T,Yu
| | Sample_contact_laboratory | Ronald Evans
| | Sample_contact_department | Gene Expression Lab
| | Sample_contact_institute | Salk Institute
| | Sample_contact_address | 10010 N Torrey Pines Rd
| | Sample_contact_city | La Jolla
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92037
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM329nnn/GSM329199/suppl/GSM329199.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM329nnn/GSM329199/suppl/GSM329199.CHP.gz
| | Sample_series_id | GSE13143
| | Sample_data_row_count | 45101
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